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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6082#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 918 fasta sequence
[CAAGAATCNCGCACGAGGTGTGGTTTGTCAACAAATCGAATCACAACAGTAGCATAAAATATGAGCGATGCTGCCATACCGGTAAATCAAATTAAAACCGAACCAAACGCCGACGAAGACATCGAGGAGAAGCTGCCGGCGTACAGAGTGTGTGCGGAAAGTAAACTTATACACGCATCGGTGGAAATAGTCGATCTCACCGAGGAGGACTTTCTGAACGAATTCAAATGCTTCCTCAACACCCTGCCCGACCGACGCCTTGACGTCGAGGCGAGAAGAACCGGCACCAATGCCAAGGCCCGCACCATCCGATATGTTTTGCCCATACCGGCTCTCCTGCTTGCCCAGGTTCGAATACACCAGGACACGTTCATATGCGAGCTGTTTCGTATCAACTTCTCGAACACGATGCTGTACGGGAAGCTAACGGCGGAAACGTTCCGCAATGATGTTACGGTGTATCAGCTTGATGATGGATCGGCAGCAGTGGATGTATATTATCGACCATCGAACAATAAAATGCTAGATAATTTAAATAAGCTGCTTTGCTGTGAAGATACTCTTCGCCGGAAACCGTCCCCGCTGAACGAGGAAGCGATGCCAAGCTCTATCGAACTGAGGCGCCATCTCAGGATGCTGATTTCGATAGCGAAAGCACGTTGTGCCACCTTTCTCGGCCGTTTGAAGCT-GCGCAC-GC-AATGCTTCGTTAGTAAGGGCGGCCTTTTCGAAAGGCCAAGCAAGTTGGCCAGGGGTAAGACCGGTGTTTGGCCCAAAGCCAATCCATACCCGGATTGNGGAAGCTTGGGGCNCACTCCGTGTTGAACTCGGNTCTTGGAAATGCTACCTACTTTCGGNGTACGAGCCTATGCTCAGTATGNTAGAANAACCGACCAGCATGAACGAAACGACTGCAAGTTG]
[+] EMBL BX467871 [CAAGAATCNCGCACGAGGTGTGGTTTGTCAACAAATCGAATCACAACAGTAGCATAAAATATGAGCGATGCTGCCATACCGGTAAATCAAATTAAAACCGAACCAAACGCCGACGAAGACATCGAGGAGAAGCTGCCGGCGTACAGAGTGTGTGCGGAAAGTAAACTTATACACGCATCGGTGGAAATAGTCGATCTCACCGAGGAGGACTTTCTGAACGAATTCAAATGCTTCCTCAACACCCTGCCCGACCGACGCCTTGACGTCGAGGCGAGAAGAACCGGCACCAATGCCAAGGCCCGCACCATCCGATATGTTTTGCCCATACCGGCTCTCCTGCTTGCCCAGGTTCGAATACACCAGGACACGTTCATATGCGAGCTGTTTCGTATCAACTTCTCGAACACGATGCTGTACGGGAAGCTAACGGCGGAAACGTTCCGCAATGATGTTACGGTGTATCAGCTTGATGATGGATCGGCAGCAGTGGATGTATATTATCGACCATCGAACAATAAAATGCTAGATAATTTAAATAAGCTGCTTTGCTGTGAAGATACTCTTCGCCGGAAACCGTCCCCGCTGAACGAGGAAGCGATGCCAAGCTCTATCGAACTGAGGCGCCATCTCAGGATGCTGATTTCGATAGCGAAAGCACGTTGTGCCACCTTTCTCGGCCGTTTGAAGCTGGCGCACGGCAAATGCTTCGTTAGTAAGGGCGGCCTTTTCGAAAGGCCAAGCAAGTTGGCCAGGGGTAAGACCGGTGTTTGGCCCAAAGCCAATCCATACCCGGATTGNGGAAGCTTGGGGCNCACTCCGTGTTGAACTCGGNTCTTGGAAA ]
[+] EMBL BX628555 [ CTGCTATACCGGTAAATCAAATTAAAACCGAACCAAACGCCGACGAAGACATCGAGGAGAAGCTGCCGGCGTACAGAGTGTGTGCGGAAAGTAAACTTATACACGCATCGGTGGAAATAGTCGATCTCACCGAGGAGGACTTTCTGAACGAATTCAAATGCTTCCTCAACACCCTGCCCGACCGACGCCTTGACGTCGAGGCGAGAAGAACCGGCACCAATGCCAAGGCCCGCACCATCCGATATGTTTTGCCCATACCGGCTCTCCTGCTTGCCCAGGTTCGAATACACCAGGACACGTTCATATGCGAGCTGTTTCGTATCAACTTCTCGAACACGATGCTGTACGGGAAGCTAACGGCGGAAACGTTCCGCAATGATGTTACGGTGTATCAGCTTGATGATGGATCGGCAGCAGTGGATGTATATTATCGACCATCGAACAATAAAATGCTAGATAATTTAAATAAGCTGCTTTGCTGTGAAGATACTCTTCGCCGGAAACCGTCCCCGCTGAACGAGGAAGCGATGCCAAGCTCTATCGAACTGAGGCGCCATCTCAGGATGCTGATTTCGATAGCGAAAGCACGTTGTGCCACCTTTCTCGGNCGTTTGAAGCT GCGCAC GC AATGC ]
[+] EMBL BX622163 [ ACCAAACGCCGACGAAGACATCGAGGAGAAGCTGCCGGCGTACAGAGTGTGTGCGGAAAGTAAACTTATACACGCATCGGTGGAAATAGTCGATCTCACCGAGGAGGACTTTCTGAACGAATTCAAATGCTTCCTCAACACCCTGCCCGACCGACGCCTTGACGTCGAGGCGAGAAGAACCGGCACCAATGCCAAGGCCCGCACCATCCGATATGTTTTGCCCATACCGGCTCTCCTGCTTGCCCAGGTTCGAATACACCAGGACACGTTCATATGCGAGCTGTTTCGTATCAACTTCTCGAACACGATGCTGTACGGGAAGCTAACGGCGGAAACGTTCCGCAATGATGTTACGGTGTATCAGCTTGATGATGGATCGGCAGCAGTGGATGTATATTATCGACCATCGAACAATAAAATGCTAGATAATTTAAATAAGCTGCTTTGCTGTGAAGATACTCTTCGCCGGAAACCGTCCCCGCTGAACGAGGAAGCGATGCCAAGCTCTATCGAACTGAGGCGCCATCTCAGGATGCTGATTTCGATAGCGAAAGCACGTTGTGCCACCTTTCTCGGCCGTTTGAAGCT GCGCAC GC AATGCTTCGTT GT ANGGCGGNC TTTCGAA GCC AGC AG TGG CA GGGT AG CC GTGTTT GCCCAAA CC ATCC TACCC GATGGCG AGCT GGG NCACT CGTG TGAGCT GG TCTGGGAAGTGCTACCTACTTTCGGNGTACGAGCCTATGCTCAGTATGNTAGAANAACCGACCAGCATGAACGAAACGACTGCAAGTTG]
consensusID : consensus_6082#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 690 fasta sequence
[GCCCGAGGTNATATGAGCGATGCTGCCCTACCGGTAAATCAAATTAAAACCGAACCAAATGCCGACGAAGACATCGAGGAGAAGCTGCCGGCGTACAGAGTGTGTGCGGAAAGTAAACTTATACACGCATCGGTGGAAATAGTCGATCTCACCGAGGAGGACTTTCTGAACGAATTCAAATGCTTCCTCAACACCCTGCCCGACCGACGCCTTGACGTCGAGGCGAGAAGAACCGGCACCAATGCAAAGGCCCGCACTATCCGATATGTTTTGGCCATACCGGCCCTCCTGCTGGCTCAAGTTCGAATACACCAGGACACGTTCATATGCGAGCTGTTTCGAATCAACTTCTCGAACACGATGCTGTACGGGAAGCTAACGGCGGAAACGTTCCGCAATGATGTTACGGTGTATCAGCTTGATGATGGATCGGCAGCAGTGGCATGTATATTATCGACCATCGAACAATAAAATGCTAGATAATTTCCAATAAGCTGCTTTGCTGTGAAGATACTCTTCGCCGGAAACCGTCCCCGCTGAACGAGGGAAGCGATTCCAAGCTCTATCGGAACTGAGCGCCATCTCAGGATGCTGAGTCGAGTAGCGAACAGCACGTTGTNACCACCTTTCTCGGCCGTTGANGCTGCGCACCGCAATGNTTCGTTGTAGGGCGGCTTTCAAGCCACGGTG]
[+] EMBL AL935021 [GCCCGAGGTNATATGAGCGATGCTGCCCTACCGGTAAATCAAATTAAAACCGAACCAAATGCCGACGAAGACATCGAGGAGAAGCTGCCGGCGTACAGAGTGTGTGCGGAAAGTAAACTTATACACGCATCGGTGGAAATAGTCGATCTCACCGAGGAGGACTTTCTGAACGAATTCAAATGCTTCCTCAACACCCTGCCCGACCGACGCCTTGACGTCGAGGCGAGAAGAACCGGCACCAATGCAAAGGCCCGCACTATCCGATATGTTTTGGCCATACCGGCCCTCCTGCTGGCTCAAGTTCGAATACACCAGGACACGTTCATATGCGAGCTGTTTCGAATCAACTTCTCGAACACGATGCTGTACGGGAAGCTAACGGCGGAAACGTTCCGCAATGATGTTACGGTGTATCAGCTTGATGATGGATCGGCAGCAGTGGCATGTATATTATCGACCATCGAACAATAAAATGCTAGATAATTTCCAATAAGCTGCTTTGCTGTGAAGATACTCTTCGCCGGAAACCGTCCCCGCTGAACGAGGGAAGCGATTCCAAGCTCTATCGGAACTGAGCGCCATCTCAGGATGCTGAGTCGAGTAGCGAACAGCACGTTGTNACCACCTTTCTCGGCCGTTGANGCTGCGCACCGCAATGNTTCGTTGTAGGGCGGCTTTCAAGCCACGGTG]
consensusID : consensus_6082#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 116 fasta sequence
[TCNGATATGGGTTGCCCATACCGGNTCTCCTGCTTGCCCAGGTTCTANTACACCATGGACACGTTCATATGCGAGCTGNTTCNTATCAACTTCTCGAACACGATGCTGTACGGGAA]
[+] EMBL BX628544 [TCNGATATGGGTTGCCCATACCGGNTCTCCTGCTTGCCCAGGTTCTANTACACCATGGACACGTTCATATGCGAGCTGNTTCNTATCAACTTCTCGAACACGATGCTGTACGGGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6082#0 CAAGAATCNCGCACGAGGTGTGGTTTGTCAACAAATCGAATCACAACAGTAGCATAAAAT 60
consensus_6082#1 ------------------------------------------------GCCCGAGGTNAT 12
consensus_6082#2 ------------------------------------------------------------
consensus_6082#0 ATGAGCGATGCTGCCATACCGGTAAATCAAATTAAAACCGAACCAAACGCCGACGAAGAC 120
consensus_6082#1 ATGAGCGATGCTGCCCTACCGGTAAATCAAATTAAAACCGAACCAAATGCCGACGAAGAC 72
consensus_6082#2 ------------------------------------------------------------
consensus_6082#0 ATCGAGGAGAAGCTGCCGGCGTACAGAGTGTGTGCGGAAAGTAAACTTATACACGCATCG 180
consensus_6082#1 ATCGAGGAGAAGCTGCCGGCGTACAGAGTGTGTGCGGAAAGTAAACTTATACACGCATCG 132
consensus_6082#2 ------------------------------------------------------------
consensus_6082#0 GTGGAAATAGTCGATCTCACCGAGGAGGACTTTCTGAACGAATTCAAATGCTTCCTCAAC 240
consensus_6082#1 GTGGAAATAGTCGATCTCACCGAGGAGGACTTTCTGAACGAATTCAAATGCTTCCTCAAC 192
consensus_6082#2 ------------------------------------------------------------
consensus_6082#0 ACCCTGCCCGACCGACGCCTTGACGTCGAGGCGAGAAGAACCGGCACCAATGCCAAGGCC 300
consensus_6082#1 ACCCTGCCCGACCGACGCCTTGACGTCGAGGCGAGAAGAACCGGCACCAATGCAAAGGCC 252
consensus_6082#2 ------------------------------------------------------------
consensus_6082#0 CGCACCATCCGATATGTTTTGCCCATACCGGCTCTCCTGCTTGCCCAGGTTCGAATACAC 360
consensus_6082#1 CGCACTATCCGATATGTTTTGGCCATACCGGCCCTCCTGCTGGCTCAAGTTCGAATACAC 312
consensus_6082#2 -------TCNGATATGGGTTGCCCATACCGGNTCTCCTGCTTGCCCAGGTTCTANTACAC 53
** ****** *** ********* ******** ** ** **** * *****
consensus_6082#0 CA-GGACACGTTCATATGCGAGCTGTTTCGTATCAACTTCTCGAACACGATGCTGTACGG 419
consensus_6082#1 CA-GGACACGTTCATATGCGAGCTGTTTCGAATCAACTTCTCGAACACGATGCTGTACGG 371
consensus_6082#2 CATGGACACGTTCATATGCGAGCTGNTTCNTATCAACTTCTCGAACACGATGCTGTACGG 113
** ********************** *** *****************************
consensus_6082#0 GAAGCTAACGGCGGAAACGTTCCGCAATGATGTTACGGTGTATCAGCTTGATGATGGATC 479
consensus_6082#1 GAAGCTAACGGCGGAAACGTTCCGCAATGATGTTACGGTGTATCAGCTTGATGATGGATC 431
consensus_6082#2 GAA--------------------------------------------------------- 116
***
consensus_6082#0 GGCAGCAGTGG-ATGTATATTATCGACCATCGAACAATAAAATGCTAGATAATTTA-AAT 537
consensus_6082#1 GGCAGCAGTGGCATGTATATTATCGACCATCGAACAATAAAATGCTAGATAATTTCCAAT 491
consensus_6082#2 ------------------------------------------------------------
consensus_6082#0 AAGCTGCTTTGCTGTGAAGATACTCTTCGCCGGAAACCGTCCCCGCTGAACGAGG-AAGC 596
consensus_6082#1 AAGCTGCTTTGCTGTGAAGATACTCTTCGCCGGAAACCGTCCCCGCTGAACGAGGGAAGC 551
consensus_6082#2 ------------------------------------------------------------
consensus_6082#0 GATGCCAAGCTCTATCGAACTGAGGCGCCATCTCAGGATGCTGATTTCGATAGCGAA-AG 655
consensus_6082#1 GATTCCAAGCTCTATCGGAACTGAGCGCCATCTCAGGATGCTGAGTCGAGTAGCGAACAG 611
consensus_6082#2 ------------------------------------------------------------
consensus_6082#0 CACGTTGTG-CCACCTTTCTCGGCCGTTTGAAGCTGCGCAC-GCAATGCTTCGTTAGTAA 713
consensus_6082#1 CACGTTGTNACCACCTTTCTCGGCCGTT-GANGCTGCGCACCGCAATGNTTCGTTGT--A 668
consensus_6082#2 ------------------------------------------------------------
consensus_6082#0 GGGCGGCCTTTTCGAAAGGCCAAGCAAGTTGGCCAGGGGTAAGACCGGTGTTTGGCCCAA 773
consensus_6082#1 GGGCGGCTTTCAAGCCACGGTG-------------------------------------- 690
consensus_6082#2 ------------------------------------------------------------
consensus_6082#0 AGCCAATCCATACCCGGATTGNGGAAGCTTGGGGCNCACTCCGTGTTGAACTCGGNTCTT 833
consensus_6082#1 ------------------------------------------------------------
consensus_6082#2 ------------------------------------------------------------
consensus_6082#0 GGAAATGCTACCTACTTTCGGNGTACGAGCCTATGCTCAGTATGNTAGAANAACCGACCA 893
consensus_6082#1 ------------------------------------------------------------
consensus_6082#2 ------------------------------------------------------------
consensus_6082#0 GCATGAACGAAACGACTGCAAGTTG 918
consensus_6082#1 -------------------------
consensus_6082#2 -------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||