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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6083#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1240 fasta sequence
[CCGCGATCGCCTCGCAGGGATTGCTAAACGTTTGCCGATTCTGTTTGTCCCAGGAAGATGAACGAATCATTCTGCTCGATGAGATCCTGGACGCGTCGCTCTCAATCGAAAATGTGCAACAGTTAACAGGAATTGAAATATGTACGGATCAAACAACGACGCAGGCGGTATGCTTGGAGTGCACCAGCAAGCTTAAAAAGGCTTCGGCTTTCCGGAACAACTGCATCAGCAACGACTACCTGTTCCGGCAGCTCTGCTCACGGTCGCGTTTCACCGTCGTCCAAGGTGCTACTGATGATGTCCAAAACGATGATTCTGTCCTGGAGGATCCACTAGATTTTGAGATCACTGATAATACGATAAACGATGGTTTCTCGGCTACTGATGATGAAACGGACTTCGAACAGGATGATGATGATGAGCCAAATCGAACGCGAACGAAACGAAATACAGACTCCACCAACGATGATACAATGGAGTACAGGGAAGAGGTCATCGCTTCCGTTGATTATGATGACGGCACAGCTATCTC-GGAAACCAGTCCGCCTAAACGCCATGAAGACGAACCAACGGTAGCAACGATGCAGCAGTCGACGGAACAAGACGATACGCTCTACTGTGCCAACTACATAGAGCTGGGTGAACCGCCCACTGATGGCGAGGAAGCCGTATTAAGTAAGAATGATAATCTTACCTGCTGGACTGGTTCACGCACCAGACGAGCCAGGCTCGTGTTAGTGCGGAGCGGACAAGCTGGCGGTAATACTCGCGCTGCCACCTCGACGAGCATTCTATTTCGCCGCACCAAGCGCAAGCGTCAGAAGCCACTCTGCGAAACGTGCGGTAAGGTGGTGACAAACATTGCAACGCACCGCGCAACACACAGCAAAGAGATGGGCCACGCTTGTCCTCACTGTTCGATACGGATGAGCAATTCATCGAATCTGCTGCGCCACGTACAAGCCGTCCACCTGAAGGTGAACATAAAGACGTGCGAAATCTGTGACATTGGATTCACCCATTACTCTACCTACCGGTCGCACATGTACGCACAGCACGGAATCGGTGAGCTGCACGAGTGCCGGGTGTGCTCAAGAACGTTCCCGGACGCCTGTGTGCTGCGAAAGCACGTGAAACGGTTTCATGGTGTGCAGGAGCACGCCTGTCCCATCTGTGGCAAACTATTCAAGATGCTCGACATGCTCAAGCGTCACCAGCTAGTCCATTCTAAAGAGCAGCC]
[+] EMBL BM576939 [CCGCGATCGCCTCGCAGGGATTGCTAAACGTTTGCCGATTCTGTTTGTCCCAGGAAGATGAACGAATCATTCTGCTCGATGAGATCCTGGACGCGTCGCTCTCAATCGAAAATGTGCAACAGTTAACAGGAATTGAAATATGTACGGATCAAACAACGACGCAGGCGGTATGCTTGGAGTGCACCAGCAAGCTTAAAAAGGCTTCGGCTTTCCGGAACAACTGCATCAGCAACGACTACCTGTTCCGGCAGCTCTGCTCACGGTCGCGTTTCACCGTCGTCCAAGGTGCTACTGATGATGTCCAAAACGATGATTCTGTCCTGGAGGATCCACTAGATTTTGAGATCACTGATAATACGATAAACGATGGTTTCTCGGCTACTGATGATGAAACGGACTTCGAACAGGATGATGATGATGAGCCAAATCGAACGCGAACGAAACGAAATACAGACTCCACCAACGATGATACAATGGAGTACAGGGAAGAGGTCATCGCTTCCGTTGATTATGATGACGGCACAGCTATCTC GGAAACCAGTCCGCCTAAACGCCATGAAGACGAACCAACGGTAGCAACGATGCAGCAGTCGACGGAACAAGACGATACGCTCTACTGTGCCAACTACATAGAGCTGGGTGAACCGCCCACTGATGGCGAGGAAGCCGT ]
[+] EMBL AL693481 [ CGAAACGAAATACAGACTCCAC ACGATGATACAATGGAGTACAGGGAAGAGGTCATCGCTTCCGTTGATTATGATGACGGCACAGCTATCTCGGGAAACCAGTCCGCCTAAACGCCATGAAGACGA GGT AACGATGCAGCAATCGACGGAACAAGACGATCCGCTCTACTCTGCCAACTACATAGAGCTGGGTGAACCACCCACTGATGGCGAGGAAGCTGCATTAAGTAAGAATGATAATCTTACCTGCTGGACTGGTTCACGCACCAGACGAGCCAGGCTCGTGTTAGTGCGGAGCGGACAAGCTGGCGGTAATACTCGCGCTGCCACCTCGACGAGCATTCTATTTCGCCGCACCAAGCGCAAGCGTCAGA ]
[+] EMBL BX609792 [ CACGCACCAGACGAGCCAGGCTCGTGTTAGTGCGGAGCGGACAAGCTGGCGGTAATACTCGCGCTGCCACCTCGACGAGCATTCTATTTCGCCGCACCAAGCGCAAGCGTCAGAAGCCACTCTGCGAAACGTGCGGTAAGGTGGTGACAAACATTGCAACGCACCGCGCAACACACAGCAAAGAGATGGGCCACGCTTGTCCTCACTGTTCGATACGGATGAGCAATTCATCGAATCTGCTGCGCCACGTACAAGCCGTCCACCTGAAGGTGAACATAAAGACGTGCGAAATCTGTGACATTGGATTCACCCATTACTCTACCTACCGGTCGCACATGTACGCACAGCACGGAATCGGTGAGCTGCACGAGTGCCGGGTGTGCTCAAGAACGTTCCCGGACGCCTGTGTGCTGCGAAAGCACGTGAAACGGTTTCATGGTGTGCAGGAGCACGCCTGTCCCATCTGTGGCAAACTATTCAAGATGCTCGACATGCTCAAGCGTCACCAGCTAGTCCATTCTAAAGAGCAGCC]
consensusID : consensus_6083#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 662 fasta sequence
[CCGCCCACGCGTCCGAAACAACGACGCAGGCGGTATGCTTGGAGTGCACCAGCAAGCTTAAAAAGGCTTCGGCATTCCGGAACAACTGCATCAGCAACGACTACCTGTTCCGGCAGCTCTGCTCACGGTCGCGTTTCACCGTCGTCCAAGGTGCTACTGATGATGTCCAAAACGATGATTCTGTCCTGGAGGATCCATTAGATTTTGAGATCACTGATAATACGATAAACGATGGTTTCTCGCCTTCTGACGATGAAACGGACTTCGAACAGGATGATGACGATGATGAGCCAAATCGAACGGGAACGAAACGGAATACAAGCTCCACAAACGATGATACAATGGAGTACAGGGAAGAGGACATCGCTTCCGTTGATTATGATGACGGCACAGCTATCTCGGAAACCAGTCCGCCTAAAGGCCATGAAGACGAATCAACAGTAGCAACGATGCAGCATTCGACGGAACAAGACGATCCGCTCTACTCTGCCAACTACATAGAGCTGGGTGAACCGCCCACTGATGGGGAGGAAGCTGCATTAAGTAAGAATGATAATCTTACCTGCTGGACTGGTTCACGCACCAGACGAGCCAAGCTCGTGTTAGTGCGGAGCGGACAAGCTGGTGGCAATAGTCGCGCTGCCACCTCGACGAGCATTCTA]
[+] EMBL BM644352 [CCGCCCACGCGTCCGAAACAACGACGCAGGCGGTATGCTTGGAGTGCACCAGCAAGCTTAAAAAGGCTTCGGCATTCCGGAACAACTGCATCAGCAACGACTACCTGTTCCGGCAGCTCTGCTCACGGTCGCGTTTCACCGTCGTCCAAGGTGCTACTGATGATGTCCAAAACGATGATTCTGTCCTGGAGGATCCATTAGATTTTGAGATCACTGATAATACGATAAACGATGGTTTCTCGCCTTCTGACGATGAAACGGACTTCGAACAGGATGATGACGATGATGAGCCAAATCGAACGGGAACGAAACGGAATACAAGCTCCACAAACGATGATACAATGGAGTACAGGGAAGAGGACATCGCTTCCGTTGATTATGATGACGGCACAGCTATCTCGGAAACCAGTCCGCCTAAAGGCCATGAAGACGAATCAACAGTAGCAACGATGCAGCATTCGACGGAACAAGACGATCCGCTCTACTCTGCCAACTACATAGAGCTGGGTGAACCGCCCACTGATGGGGAGGAAGCTGCATTAAGTAAGAATGATAATCTTACCTGCTGGACTGGTTCACGCACCAGACGAGCCAAGCTCGTGTTAGTGCGGAGCGGACAAGCTGGTGGCAATAGTCGCGCTGCCACCTCGACGAGCATTCTA]
consensusID : consensus_6083#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 641 fasta sequence
[CCGCCCACGCGTCCGAATCGACGGAACAAGACGATCCGCTCTACTCTGCCAACTACATAGAGCTGGGTGAACCACCCACTGATGGCGAGGAAGCTGCATTAAGTAAGAATGATAATCTTACCTGCTGGACTGGTTCACGCACCAGACGAGCCAGGCTCGTGTTAGTGCGGAGCGGACAAGCTGGCGGTAATACTCGCGCTGCCACCTCGACGAGCATTCTATTTCGCCGCACCAAGCGCAAGCGTCAGAAGCCACTCTGCGAAACGTGCGGTAAGGTGGTGACAAACATTGCAACGCACCGCGCAACACACAGCAAAGAGATGGGCCACGCTTGTCCGCACTGTTCGATACGGATGAGCAATTCATCGAATCTGCTGCGCCACGTACAAGCCGTCCACCTGAAGGTGAACATAAAGACGTGCGAAATCTGTGACATTGGATTCACCCATTACTCTACCTACCGGTCGCACATGTACGCACAGCACGGAATCGGTGAGCTGCACGAGTGCCGGGTGTGCTCAAGAACGTTCCCGGACGCCTGTGTGCTGCGAAAGCACGTGAAACGGTTTCATGGTGTGCAGGAGCACGCCTGTCCCATCTGTGGCAAACTATTCAAGATGCTCGACATGCTCAAGCGTCAC]
[+] EMBL BM656526 [CCGCCCACGCGTCCGAATCGACGGAACAAGACGATCCGCTCTACTCTGCCAACTACATAGAGCTGGGTGAACCACCCACTGATGGCGAGGAAGCTGCATTAAGTAAGAATGATAATCTTACCTGCTGGACTGGTTCACGCACCAGACGAGCCAGGCTCGTGTTAGTGCGGAGCGGACAAGCTGGCGGTAATACTCGCGCTGCCACCTCGACGAGCATTCTATTTCGCCGCACCAAGCGCAAGCGTCAGAAGCCACTCTGCGAAACGTGCGGTAAGGTGGTGACAAACATTGCAACGCACCGCGCAACACACAGCAAAGAGATGGGCCACGCTTGTCCGCACTGTTCGATACGGATGAGCAATTCATCGAATCTGCTGCGCCACGTACAAGCCGTCCACCTGAAGGTGAACATAAAGACGTGCGAAATCTGTGACATTGGATTCACCCATTACTCTACCTACCGGTCGCACATGTACGCACAGCACGGAATCGGTGAGCTGCACGAGTGCCGGGTGTGCTCAAGAACGTTCCCGGACGCCTGTGTGCTGCGAAAGCACGTGAAACGGTTTCATGGTGTGCAGGAGCACGCCTGTCCCATCTGTGGCAAACTATTCAAGATGCTCGACATGCTCAAGCGTCAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6083#0 CCGCGATCGCCTCGCAGGGATTGCTAAACGTTTGCCGATTCTGTTTGTCCCAGGAAGATG 60
consensus_6083#2 ------------------------------------------------------------
consensus_6083#1 ------------------------------------------------------------
consensus_6083#0 AACGAATCATTCTGCTCGATGAGATCCTGGACGCGTCGCTCTCAATCGAAAATGTGCAAC 120
consensus_6083#2 ------------------------------------------------------------
consensus_6083#1 ------------------------------------------------------------
consensus_6083#0 AGTTAACAGGAATTGAAATATGTACGGATCAAACAACGACGCAGGCGGTATGCTTGGAGT 180
consensus_6083#2 ------------------------------------------------------------
consensus_6083#1 ------------------------------------------------------------
consensus_6083#0 GCACCAGCAAGCTTAAAAAGGCTTCGGCTTTCCGGAACAACTGCATCAGCAACGACTACC 240
consensus_6083#2 ------------------------------------------------------------
consensus_6083#1 ------------------------------------------------------------
consensus_6083#0 TGTTCCGGCAGCTCTGCTCACGGTCGCGTTTCACCGTCGTCCAAGGTGCTACTGATGATG 300
consensus_6083#2 ------------------------------------------------------------
consensus_6083#1 ------------------------------------------------------------
consensus_6083#0 TCCAAAACGATGATTCTGTCCTGGAGGATCCACTAGATTTTGAGATCACTGATAATACGA 360
consensus_6083#2 ------------------------------------------------------------
consensus_6083#1 ------------------------------------------------------------
consensus_6083#0 TAAACGATGGTTTCTCGGCTACTGATGATGAAACGGACTTCGAACAGGATGATGATGATG 420
consensus_6083#2 ------------------------------------------------------------
consensus_6083#1 ------------------------------------------------------------
consensus_6083#0 AGCCAAATCGAACGCGAACGAAACGAAATACAGACTCCACCAACGATGATACAATGGAGT 480
consensus_6083#2 ------------------------------------------------------------
consensus_6083#1 ------------------------------------------------------------
consensus_6083#0 ACAGGGAAGAGGTCATCGCTTCCGTTGATTATGATGACGGCACAGCTATCTCGGAAACCA 540
consensus_6083#2 ------------------------------------------------------------
consensus_6083#1 ------------------------------------------------------------
consensus_6083#0 GTCCGCCTAAACGCCATGAAGACGAACCAACGGTAGCAACGATGCAGC--AGTCGACGGA 598
consensus_6083#2 -----------------------------------CCGCCCACGCGTCCGAATCGACGGA 25
consensus_6083#1 -----------------------------------CCGCCCACGCGTCCGAAACAACGAC 25
* * * ** * * * ***
consensus_6083#0 ACAAGACGATACGCTCT-ACTGTGCCAACTACATAGAGCTGGGTGAACCGCCCACTGATG 657
consensus_6083#2 ACAAGACGATCCGCTCT-ACTCTGCCAACTACATAGAGCTGGGTGAACCACCCACTGATG 84
consensus_6083#1 GCA-GGCGGTATGCTTGGAGTGCACCAGCAAGCTTAAAAAGGCTTCGGCATTCCGGAACA 84
** * ** * *** * * *** * * * * ** * * * *
consensus_6083#0 GC-GAGGAAGCCGTATTAAGTAAGAATGATAATCTTACCTGCTGGACTGGTTCACG--CA 714
consensus_6083#2 GC-GAGGAAGCTGCATTAAGTAAGAATGATAATCTTACCTGCTGGACTGGTTCACG--CA 141
consensus_6083#1 ACTGCATCAGCAACGACTACCTGTTCCGGCAGCTCTGCTCACGGTCGCGTTTCACCGTCG 144
* * *** * * * * * * * * ***** *
consensus_6083#0 CCAGACGAGCCAG-GCTCGTGTT-AGTGCGGAGCGGACAAGCTGGCGGTAATACTCG--- 769
consensus_6083#2 CCAGACGAGCCAG-GCTCGTGTT-AGTGCGGAGCGGACAAGCTGGCGGTAATACTCG--- 196
consensus_6083#1 TCCAAGGTGCTACTGATGATGTCCAAAACGATGATTCTGTCCTGGAGGATCCATTAGATT 204
* * * ** * * * *** * ** * **** ** * * *
consensus_6083#0 -------CGCTGCCACCTCGACGAGC-ATTCTATTTCGCCGCACCAAGCGCAAGCG---- 817
consensus_6083#2 -------CGCTGCCACCTCGACGAGC-ATTCTATTTCGCCGCACCAAGCGCAAGCG---- 244
consensus_6083#1 TTGAGATCACTGATAATACGATAAACGATGGTTTCTCGCCTTCTGACGATGAAACGGACT 264
* *** * *** * * ** * * ***** * * ** **
consensus_6083#0 TCAGAAGCCACTCTGCGAAACGTGCGGTAAGGTGGTGACAAACATTGCAACGCACC-GCG 876
consensus_6083#2 TCAGAAGCCACTCTGCGAAACGTGCGGTAAGGTGGTGACAAACATTGCAACGCACC-GCG 303
consensus_6083#1 TCGAACAGGATGATGACGATGATGAGCCAAATCGAACGGGAACGAAACGGAATACAAGCT 324
** * * ** * ** * ** * *** * ** **
consensus_6083#0 CAACACACAGCAAAGAGATGGGCCACGCTTGTCCTCACTGTTCGATACGGATGAGCAATT 936
consensus_6083#2 CAACACACAGCAAAGAGATGGGCCACGCTTGTCCGCACTGTTCGATACGGATGAGCAATT 363
consensus_6083#1 CCACAAACGATGATACAATGGAGTACAGGGAAGAGGAC--ATCGCTTCCGTTGATTATGA 382
* *** ** * **** ** ** *** * * * *** *
consensus_6083#0 CATCGAATCTGCTGCGCCACGTACAAGCCGTCCACCTGAAGGTGAACATAAAGACGTGCG 996
consensus_6083#2 CATCGAATCTGCTGCGCCACGTACAAGCCGTCCACCTGAAGGTGAACATAAAGACGTGCG 423
consensus_6083#1 TGACGGCACAGCTATCTCGGAAACCAG---TCCGCCTAAAGGC---CATGAAGACGAATC 436
** * *** * ** ** *** *** **** *** ******
consensus_6083#0 AA----ATCTGTGACATTGGATTCACC----CATTACTCTACCTACCGGTCGCACATGTA 1048
consensus_6083#2 AA----ATCTGTGACATTGGATTCACC----CATTACTCTACCTACCGGTCGCACATGTA 475
consensus_6083#1 AACAGTAGCAACGATGCAGCATTCGACGGAACAAGACGATCCGCTCTACTCTGCCAACTA 496
** * * ** * **** * ** ** * * * ** ** **
consensus_6083#0 CGCACAGCACGG-AATCGGTGAGCTGCACGAGTGCCGGGTGTGCTCAAGAACGTTCCCGG 1107
consensus_6083#2 CGCACAGCACGG-AATCGGTGAGCTGCACGAGTGCCGGGTGTGCTCAAGAACGTTCCCGG 534
consensus_6083#1 CATAGAGCTGGGTGAACCGCCCACTGATGGGGAGGAAGCTGCATTAAGTAAGAATGATAA 556
* * *** ** * * * *** * * * * ** * * ** *
consensus_6083#0 AC--GCCTGTGTGCTGCGAAAGCACGTGAAACGGTTTCATGGTGTGCAGGAGCACGCCTG 1165
consensus_6083#2 AC--GCCTGTGTGCTGCGAAAGCACGTGAAACGGTTTCATGGTGTGCAGGAGCACGCCTG 592
consensus_6083#1 TCTTACCTGCTGGACTGGTTCACGCACCAGACGAGCCAAGCTCGTGTTAGTGCGGAGCGG 616
* **** * * * * * *** * *** * ** * *
consensus_6083#0 TCCCATCTGTGGCAAACTATTCAAGATGCTCGACATGCTCAAGCGTCACCAGCTAGTCCA 1225
consensus_6083#2 TCCCATCTGTGGCAAACTATTCAAGATGCTCGACATGCTCAAGCGTCAC----------- 641
consensus_6083#1 ACAAGCTGGTGGCAA--TAGTCGCGCTGCC--ACCTCGACGAGCATTCTA---------- 662
* ******* ** ** * *** ** * * *** *
consensus_6083#0 TTCTAAAGAGCAGCC 1240
consensus_6083#2 ---------------
consensus_6083#1 ---------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||