cluster # 6088

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Anopheles gambiae
cluster # 6088 cluster # 6088 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6088#0 length = 842 sequences # 3

consensus_6088#1 length = 605 sequences # 1
consensus_6088#2 length = 228 sequences # 1

consensusID : consensus_6088#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 842
fasta sequence

                              [CCGGTCATTGTCATTTTGGTCATGTATTTCAATCTTACCAAAATAATGTCCAACACACACACATACTTAAAAGTAATTAAAAGAACGTTTCTTCCAACACCGCGCAACCGCAGGATGTTGTCAGTTTTAATGCCAAACCTTCAGCAGTGTAAATGTGAAAAGTGTCCCCGGAAAATCGCTTAAAAAGTTCATCTCCCGTGCAGTTAGGAGTGTTTTTGACGGTAGTAAAAGCGGTATGAATTAGTCCGTTGTACATTTCGTACGGAAGCAAAAACGAAAACTCTACCCGCCCGCCCCCATTATTAAGATCTATCGCTATTTGCTACAACACTACATCAAGTATAAGTATATATTAATAATTATAATTATCTCCTTTCACTAATACCGTCGTTATTACTACTTCACTCACAATCCACGGGGGTGTGTACGCCCTTACCTACCGGCAGGCACACCTTGAGTGCTGTTAATAATACACTCACAAAACTTACACAACACACTTATGAACGCTGGGGGAACAGGTTCCAGGACGACAGGATACATCGTATCGGAAAGCACATACAAGAACTGAACAGAAGTAAGGATTTGTGCAAGAAAAGCAAAGAGAATAGTGAAAACTAGGAGACAAAACACCTTGTGCAAGGAATTGTACTCACTGGCAGGAATTAAAGGCGAACGAACAGAGTAACAGGAAGCTTGGTGGCCGTGGTAGCTTGTATAAAACAAACCCCCCCATGTTTAACACACTCGAACTCGAAGGTGAACACTAATTTAACATATTGATCCACAGCCAACATACATGGAGGGAGACAGTGTAGCATACTAAAAACAACCGCCAAACTAAT]

[+] EMBL BM576303             [CCGGTCATTGTCATTTTGGTCATGTATTTCAATCTTACCAAAATAATGTCCAACACACACACATACTTAAAAGTAATTAAAAGAACGTTTCTTCCAACACCGCGCAACCGCAGGATGTTGTCAGTTTTAATGCCAAACCTTCAGCAGTGTAAATGTGAAAAGTGTCCCCGGAAAATCGCTTAAAAAGTTCATCTCCCGTGCAGTTAGGAGTGTTTTTGACGGTAGTAAAAGCGGTATGAATTAGTCCGTTGTACATTTCGTACGGAAGCAAAAACGAAAACTCTACCCGCCCGCCCCCATTATTAAGATCTATCGCTATTTGCTACAACACTACATCAAGTATAAGTATATATTAATAATTATAATTATCTCCTTTCACTAATACCGTCGTTATTACTACTTCACTCACAATCCACGGGGGTGTGTACGCCCTTACCTACCGGCAGGCACACCTTGAGTGCTGTTAATAATACACTCACAAAACTTACACAACACACTTATGAACGCTGGGGGAACAGGTTCCAGGACGACAGGATACATCGTATCGGAAAGCACATACAAGAACTGAACAGAAGTAAGGATTTGTGCAAGAAAAGCAAAGAGAATAGTGAAAACTAGGAGACAAAACACCTTGTGCAAGGAATTGTACTCACTGGCAGGAATTAAAGGCGAACGAACAGAGTAACAGGA                                                                                                                                                        ]
[+] EMBL BX612599             [                                                                                                    CGCGCAACCGCAGGATGTTGTCAGTTTTAATGCCAAACCTTCAGCAGTGTAAATGTGAAAAGTGTCCCCGGAAAATCGCTTAAAAAGTTCATCTCCCGTGCAGTTAGGAGTGTTTTTGACGGTAGTAAAAGCGGTATGAATTAGTCCGTTGTACATTTCGTACGGAAGCAAAAACGAAAACTCTACCCGCCCGCCCCCATTATTAAGATCTATCGCTATTTGCTACAACACTACATCAAGTATAAGTATATATTAATAATTATAATTATCTCCTTTCACTAATACCGTCGTTATTACTACTTCACTCACAATCCACGGGGGTGTGTACGCCCTTACCTACCGGCAGGCACACCTTGAGTGCTGTTAATAATACACTCACAAAACTTACACAACACACTTATGAACG TGGGGGAACAGGTTCCAGGACGACAGGATACATCGTATCGGAAAGCACATACAAGAACTGAACAGAAGTAAGGATTTGTGCAAGAAAAGCAAAGAGAATAGTGAAAACTAGGAGACAAAACACCTTGTGCAAGGAATTGTACTCACTGGCAGGAATTAAAGGCGAACGAACAGAGTAACAGGAAGCTTGGTGGCCGTGGTAGCTTGTATAAAACAAACCCCCCCATGTTTAACACACTCGAACTCGAAGGTGAACACTAATTT                                                                        ]
[+] EMBL BM653758             [                                                                                                                                               ccgGTGTAAATGTGAAAAGTGTCCCCGGAAAATCGCTTAAAAAGTTCATCTCCCGTGCAGTTAGGAGTGTTTTTGACGGTAGTAAAAGCGGTATGAATTAGTCCGTTGTACATTTCGTACGGAAGCAAAAACGAAAACTCTACCCGCCCGCCCCCATTATTAAGATCTATCGCTATTTGCTACAACACTACATCAAGTATAAGTATATATTAATAATTATAATTATCTCCTTTCACTAATACCGTCGTTATTACTACTTCACTCACAATCCACGGGGGTGTGTACGCCCTTACCTACCGGCAGGCACACCTTGAGTGCTGTTAATAATACACTCACAAAACTTACACAACACACTTATGAACGCTGGGGGAACAGGTTCCAGGACGACAGGATACATCGTATCGGAAAGCACATACAAGAACTGAACAGAAGTAAGGATTTGTGCAAGAAAAGCAAAGAGAATAGTGAAAACTAGGAGACAAAACACCTTGTGCAAGGAATTGTACTCACTGGCAGGAATTAAAGGCGAACGAACAGAGTAACAGGAAGCTTGGTGGCCGTGGTAGCTTGTATAAAACAAACCCCCCCATGTTTAACACACTCGAACTCGAAGGTGAACACTAATTTAACATATTGATCCACAGCCAACATACATGGAGGGAGACAGTGTAGCATACTAAAAACAACCGCCAAACTAAT]




>consensus_6088#0
CCGGTCATTGTCATTTTGGTCATGTATTTCAATCTTACCAAAATAATGTCCAACACACAC
ACATACTTAAAAGTAATTAAAAGAACGTTTCTTCCAACACCGCGCAACCGCAGGATGTTG
TCAGTTTTAATGCCAAACCTTCAGCAGTGTAAATGTGAAAAGTGTCCCCGGAAAATCGCT
TAAAAAGTTCATCTCCCGTGCAGTTAGGAGTGTTTTTGACGGTAGTAAAAGCGGTATGAA
TTAGTCCGTTGTACATTTCGTACGGAAGCAAAAACGAAAACTCTACCCGCCCGCCCCCAT
TATTAAGATCTATCGCTATTTGCTACAACACTACATCAAGTATAAGTATATATTAATAAT
TATAATTATCTCCTTTCACTAATACCGTCGTTATTACTACTTCACTCACAATCCACGGGG
GTGTGTACGCCCTTACCTACCGGCAGGCACACCTTGAGTGCTGTTAATAATACACTCACA
AAACTTACACAACACACTTATGAACGCTGGGGGAACAGGTTCCAGGACGACAGGATACAT
CGTATCGGAAAGCACATACAAGAACTGAACAGAAGTAAGGATTTGTGCAAGAAAAGCAAA
GAGAATAGTGAAAACTAGGAGACAAAACACCTTGTGCAAGGAATTGTACTCACTGGCAGG
AATTAAAGGCGAACGAACAGAGTAACAGGAAGCTTGGTGGCCGTGGTAGCTTGTATAAAA
CAAACCCCCCCATGTTTAACACACTCGAACTCGAAGGTGAACACTAATTTAACATATTGA
TCCACAGCCAACATACATGGAGGGAGACAGTGTAGCATACTAAAAACAACCGCCAAACTA
AT

consensusID : consensus_6088#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 605
fasta sequence

                              [GATCGCCCGAGGTTATTTGGTCATGTATTTCAATCTTACCAAAATAATGTCCAACACACACACACACTTAAAAGTAATTAAAAGAACGTTTCTTCCAACACCGCGCAACCGCAGGATGTTGTCAGTTTTCATGCCAAACCTTCAGCAGTGTAAACGTGAAAAGTGCCCCCGAAAATCGCTTAAAAAGTTCATCTCCCGAGCAGTTAGGAGTGTTTTCGACGGTAGGTAAAAGCGGTATGAATTAGTCCGTTGTACATTTCGTACGGAAGCAAAAACGAAAACTCTACCCGCCCGCCCCCATTATTAAGATCTATCGCTATTTGCTACAACACTACATCAAGTATAAGTATATATTAATAAATCATAATTATCTTCTTTCGCTAATACCGTCGTTATTACTACTTCACTCACAAACCACGGGGGTGTGTACGCCCTTACCTACAGGCAGGCAGACCTGAGTGCTGTTAATAATACACTCACAAAACTTACATAACACACTTATGAACACTGGGGGAACAGGTCCCAGGACGACAGGATATATCGTATCGGGAAGCACATACAAGAACTGAACAGAAGTAAGGATTGTGCNAGAAAAGCAAAGATAA]

[+] EMBL AL693463             [GATCGCCCGAGGTTATTTGGTCATGTATTTCAATCTTACCAAAATAATGTCCAACACACACACACACTTAAAAGTAATTAAAAGAACGTTTCTTCCAACACCGCGCAACCGCAGGATGTTGTCAGTTTTCATGCCAAACCTTCAGCAGTGTAAACGTGAAAAGTGCCCCCGAAAATCGCTTAAAAAGTTCATCTCCCGAGCAGTTAGGAGTGTTTTCGACGGTAGGTAAAAGCGGTATGAATTAGTCCGTTGTACATTTCGTACGGAAGCAAAAACGAAAACTCTACCCGCCCGCCCCCATTATTAAGATCTATCGCTATTTGCTACAACACTACATCAAGTATAAGTATATATTAATAAATCATAATTATCTTCTTTCGCTAATACCGTCGTTATTACTACTTCACTCACAAACCACGGGGGTGTGTACGCCCTTACCTACAGGCAGGCAGACCTGAGTGCTGTTAATAATACACTCACAAAACTTACATAACACACTTATGAACACTGGGGGAACAGGTCCCAGGACGACAGGATATATCGTATCGGGAAGCACATACAAGAACTGAACAGAAGTAAGGATTGTGCNAGAAAAGCAAAGATAA]




>consensus_6088#1
GATCGCCCGAGGTTATTTGGTCATGTATTTCAATCTTACCAAAATAATGTCCAACACACA
CACACACTTAAAAGTAATTAAAAGAACGTTTCTTCCAACACCGCGCAACCGCAGGATGTT
GTCAGTTTTCATGCCAAACCTTCAGCAGTGTAAACGTGAAAAGTGCCCCCGAAAATCGCT
TAAAAAGTTCATCTCCCGAGCAGTTAGGAGTGTTTTCGACGGTAGGTAAAAGCGGTATGA
ATTAGTCCGTTGTACATTTCGTACGGAAGCAAAAACGAAAACTCTACCCGCCCGCCCCCA
TTATTAAGATCTATCGCTATTTGCTACAACACTACATCAAGTATAAGTATATATTAATAA
ATCATAATTATCTTCTTTCGCTAATACCGTCGTTATTACTACTTCACTCACAAACCACGG
GGGTGTGTACGCCCTTACCTACAGGCAGGCAGACCTGAGTGCTGTTAATAATACACTCAC
AAAACTTACATAACACACTTATGAACACTGGGGGAACAGGTCCCAGGACGACAGGATATA
TCGTATCGGGAAGCACATACAAGAACTGAACAGAAGTAAGGATTGTGCNAGAAAAGCAAA
GATAA

consensusID : consensus_6088#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 228
fasta sequence

                              [CCGGACGGGAAGAGGCTCAGAAGAGAAGAGAAATGGAGGGAGACAGTGTAGCATACTAAAAACAACCGCCAAACTAATGGTAACATGCGCCGTAACCGCGTTAGGGCAGCGAAGGAATACGCGGATCGTAAAAGGAAAGAAGTGACAACAAACAGCAAACAATACGATCGTATATGTGAGAAAACGGAAATGGAAATATATTTAAAAACCCAAGACAATTTAAAATCC]

[+] EMBL BM603265             [CCGGACGGGAAGAGGCTCAGAAGAGAAGAGAAATGGAGGGAGACAGTGTAGCATACTAAAAACAACCGCCAAACTAATGGTAACATGCGCCGTAACCGCGTTAGGGCAGCGAAGGAATACGCGGATCGTAAAAGGAAAGAAGTGACAACAAACAGCAAACAATACGATCGTATATGTGAGAAAACGGAAATGGAAATATATTTAAAAACCCAAGACAATTTAAAATCC]




>consensus_6088#2
CCGGACGGGAAGAGGCTCAGAAGAGAAGAGAAATGGAGGGAGACAGTGTAGCATACTAAA
AACAACCGCCAAACTAATGGTAACATGCGCCGTAACCGCGTTAGGGCAGCGAAGGAATAC
GCGGATCGTAAAAGGAAAGAAGTGACAACAAACAGCAAACAATACGATCGTATATGTGAG
AAAACGGAAATGGAAATATATTTAAAAACCCAAGACAATTTAAAATCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6088#0      --CCGGTCATTGTCATTTTGGTCATGTATTTCAATCTTACCAAAATAATGTCCAACACAC 58
consensus_6088#1      GATCGCCCGAGGTTATTT-GGTCATGTATTTCAATCTTACCAAAATAATGTCCAACACAC 59
consensus_6088#2      ------------------------------------------------------------
                                                                                  

consensus_6088#0      ACACATACTTAAAAGTAATTAAAAGAACGTTTCTTCCAACACCGCGCAACCGCAGGATGT 118
consensus_6088#1      ACACACACTTAAAAGTAATTAAAAGAACGTTTCTTCCAACACCGCGCAACCGCAGGATGT 119
consensus_6088#2      --CCGGACGGGAAGAGGCTCAGAAGAGAAGAGA----AATGGAGGGAGACAGTGTAGCAT 54
                         *  **   **     * * ****           **    * *  ** *       *

consensus_6088#0      TGTCAGTTTTAATGCCAAACCTTCAGCAGTGTAAATGTGAAAAGTGTCCCCGGAAAATCG 178
consensus_6088#1      TGTCAGTTTTCATGCCAAACCTTCAGCAGTGTAAACGTGAAAAGTGCCCCCG-AAAATCG 178
consensus_6088#2      ACTAAAAACAACCGCCAAACT------AATGGTAACATGCGCCGTAACCGCGTTAGGGCA 108
                        * *        *******       * **  **  **    **  ** **  *   * 

consensus_6088#0      CTTAAAAAGTTCATCTCCCGTGCAGTTAGGAGTGTTTTTGACGGTAG-TAA-AAGCGGTA 236
consensus_6088#1      CTTAAAAAGTTCATCTCCCGAGCAGTTAGGAGTGTTTTCGACGGTAGGTAA-AAGCGGTA 237
consensus_6088#2      GCGAAGGAATACGCGGATCGTAAAAGGAAAGAAGT----GACAACAAACAGCAAACAATA 164
                         **  * * *      **   *   *     **    ***   *   *  ** *  **

consensus_6088#0      TGAATTAGTCCGTTGTACATTTCGTACGGAAGCAAAAACGAAAACTCTACCCGCCCGCCC 296
consensus_6088#1      TGAATTAGTCCGTTGTACATTTCGTACGGAAGCAAAAACGAAAACTCTACCCGCCCGCCC 297
consensus_6088#2      CGA---------TCGTATAT---GTGAGAAAACGGAAATGGAAA-TATATTTAAAAACCC 211
                       **         * *** **   **  * ** *  *** * *** * **        ***

consensus_6088#0      CCATTA--TTAAGATCTATCGCTATTTGCTACAACACTACATCAAGTATAAGTATATATT 354
consensus_6088#1      CCATTA--TTAAGATCTATCGCTATTTGCTACAACACTACATCAAGTATAAGTATATATT 355
consensus_6088#2      AAGACAATTTAAAATCC------------------------------------------- 228
                           *  **** ***                                            

consensus_6088#0      AATAA-TTATAATTATCTCCTTTCACTAATACCGTCGTTATTACTACTTCACTCACAATC 413
consensus_6088#1      AATAAATCATAATTATCTTCTTTCGCTAATACCGTCGTTATTACTACTTCACTCACAAAC 415
consensus_6088#2      ------------------------------------------------------------
                                                                                  

consensus_6088#0      CACGGGGGTGTGTACGCCCTTACCTACCGGCAGGCACACCTTGAGTGCTGTTAATAATAC 473
consensus_6088#1      CACGGGGGTGTGTACGCCCTTACCTACAGGCAGGCAGACCT-GAGTGCTGTTAATAATAC 474
consensus_6088#2      ------------------------------------------------------------
                                                                                  

consensus_6088#0      ACTCACAAAACTTACACAACACACTTATGAACGCTGGGGGAACAGGTTCCAGGACGACAG 533
consensus_6088#1      ACTCACAAAACTTACATAACACACTTATGAACACTGGGGGAACAGGTCCCAGGACGACAG 534
consensus_6088#2      ------------------------------------------------------------
                                                                                  

consensus_6088#0      GATACATCGTATCGGAAAGCACATACAAGAACTGAACAGAAGTAAGGATTTGTGCAAGAA 593
consensus_6088#1      GATATATCGTATCGGGAAGCACATACAAGAACTGAACAGAAGTAAGGATT-GTGCNAGAA 593
consensus_6088#2      ------------------------------------------------------------
                                                                                  

consensus_6088#0      AAGCAAAGAGAATAGTGAAAACTAGGAGACAAAACACCTTGTGCAAGGAATTGTACTCAC 653
consensus_6088#1      AAGCAAAGATAA------------------------------------------------ 605
consensus_6088#2      ------------------------------------------------------------
                                                                                  

consensus_6088#0      TGGCAGGAATTAAAGGCGAACGAACAGAGTAACAGGAAGCTTGGTGGCCGTGGTAGCTTG 713
consensus_6088#1      ------------------------------------------------------------
consensus_6088#2      ------------------------------------------------------------
                                                                                  

consensus_6088#0      TATAAAACAAACCCCCCCATGTTTAACACACTCGAACTCGAAGGTGAACACTAATTTAAC 773
consensus_6088#1      ------------------------------------------------------------
consensus_6088#2      ------------------------------------------------------------
                                                                                  

consensus_6088#0      ATATTGATCCACAGCCAACATACATGGAGGGAGACAGTGTAGCATACTAAAAACAACCGC 833
consensus_6088#1      ------------------------------------------------------------
consensus_6088#2      ------------------------------------------------------------
                                                                                  

consensus_6088#0      CAAACTAAT 842
consensus_6088#1      ---------
consensus_6088#2      ---------