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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6093#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1031 fasta sequence
[AACGGAAAAGAATATGGAAATGAAAGAGTGCTGGAAAGGGAGAGGAAAGAAAAAAATGGAAAACACTACGCAAAAGTAATAAAATAATGTTAAAAATAAATTGTTGTTGATAAAAAGTAAACTAATTGATACAATGTAGTAGGAGGAGGAGTGGAAGGCAGCAAAAACAAAACATCACTTTTATTAACGAAACAGTTTTGACGGTTCATGCGCGGAGCGGAACGTCATGTAAAACACAACTTACATAAATAAGAACACATTCACACACACACACACACACTACATACCCACTCACACACTCACACTTAAATTAGTTGTGTAGTAATTCCTTAAGGTAATTATGGAAATATATTATCAAATATTGTCGTACCGGAGGTGAGCAGTGATGTGAATTGAAGGGGTGGATTCATGGTGGGCGAAACGCAGTGCACGCAAACACCACACAAAACTCTAAAATAGTCTAACGGCACGCACACACACACACGCACACTCCCACCAACTGATTTTTTCCTCCATGTCCTATGTCGGAACAATATCCTTTTTTTCTACACAAAGAGTCGTTTGATATGGCATTTTAATTTTAGTTGAAGTTTTATTTCAACTGAAAACTGTAATCTTTTCCATTTTTATAAAACAATAATGTTACAACCATTACAAGCAAACTGTTACGCTTCTAAGAAATAAAAATAAAATTAAATAAAACAATTCATGGCAAAAGGCAAACATTACAATAAGGAAAGAGTCAATAAAATAACGAACACAATACAACAGATAAGAAAATCTTAACATGAAAATGGTAACTATGAATACACAAACTTTACAACACAAAATGTGCACCAACCTGTTCATAAACTAACGAACAAAAGCAAACATGCAAAGCAAGACGATAAAAGGAAAAGAAACTGAGTTGATAAACCAAACGACAAAAACAAAAACCACACAAACAAACATTCACATGAAAGTTATAACCGGTCTATGTAGGATATGTAAAGCTGTGCCCTTGTGTGTGTGTGTGTACGTGTGTTCATTGA]
[+] EMBL BX615831 [AACGGAAAAGAATATGGAAATGAAAGAGTGCTGGAAAGGGAGAGGAAAGAAAAAAATGGAAAACACTACGCAAAAGTAATAAAATAATGTTAAAAATAAATTGTTGTTGATAAAAAGTAAACTAATTGATACAATGTAGTAGGAGGAGGAGTGGAAGGCAGCAAAAACAAAACATCACTTTTATTAACGAAACAGTTTTGACGGTTCATGCGCGGAGCGGAACGTCATGTAAAACACAACTTACATAAATAAGAACACATTCACACACACACACACACACTACATACCCACTCACACACTCACACTTAAATTAGTTGTGTAGTAATTCCTTAAGGTAATTATGGAAATATATTATCAAATATTGTCGTACCGGAGGTGAGCAGTGATGTGAATTGAAGGGGTGGATTCATGGTGGGCGAAACGCAGTGCACGCAAACACCACACAAAACTCTAAAATAGTCTAACGGCACGCACACACACACACGCACACTCCCACCAACTGATTTTTTCCTCCATGTCCTATGTCGGAACAATATCCTTTTTTTCTACACAAAGAGTCGTTTGATATGGCATTTTAATTTTAGTTGAAGTTTTATTTCAACTGAAAACTGTAATCTTTTCCATTTTTATAAAACAATAATGTTACAACCATTACAAGCAAACTGTTACGCTTCTAAGAAATAAAAATAAAATTAAATAAAACAATTCATGGC ]
[+] EMBL BX608153 [ GATTCATGGTGGGCGAAACGCAGTGCACGCAAACACCACACAAAACTCTAAAATAGTCTAACGGCACGCACACACACACACGCACACTCCCACCAACTGATTTTTTCCTCCATGTCCTATGTCGGAACAATATCCTTTTTTTCTACACAAAGAGTCGTTTGATATGGCATTTTAATTTTAGTTGAAGTTTTATTTCAACTGAAAACTGTAATCTTTTCCATTTTTATAAAACAATAATGTTACAACCATTACAAGCAAACTGTTACGCTTCTAAGAAATAAAAATAAAATTAAATAAAACAATTCATGGCAAAAGGCAAACATTACAATAAGGAAAGAGTCAATAAAATAACGAACACAATACAACAGATAAGAAAATCTTAACATGAAAATGGTAACTATGAATACACAAACTTTACAACACAAAATGTGCACCAACCTGTTCATAAACTAACGAACAAAAGCAAACATGCAAAGCAAGACGATAAAAGGAAAAGAAACTGAGTTGATAAACCAAACGACAAAAACAAAAACCACACAAACAAACATTCACATGAAAGTTATAACCGGTCTATGTAGGATATGTAAAGCTGTGCCCTTGTGTGTGTGTGTGTACGTGTGTTCATTGA]
consensusID : consensus_6093#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 697 fasta sequence
[CCGCCCACGCGTCCGACGGCACGCACACACACACACGCACACTCCCACCAACTGATTTTTTCCTCCATGTCCTATGTCGGAACAATATCCTTTTTTTCTACACAAAGAGTCGTTTGATATGGCATTTTAATTTTAGTTGAAGTTTTATTTCAACTGAAAACTGTAATCTTTTCCATTTTTATAAAACAATAATGTTACAACCATTACAAGCAAACTGTTACGCTTCTAAGAAATAAAAATAAAATTAAATAAAACAATTCATGGCAAAAGGCAAACATTACAATAAGGAAAGAGTCAATAAAATAACAAACACAATACAACAGATAAGAAAATCTTAACATGAAAATGGTAACTATGAATACACAAACTTTACAACACAAAATGTGCACCAACCTGTTCATAAACTAACGAACAAAAGCAAACATGCAAAGCAAGACGATAAAAGGAAAAGAAACTGAGTTGATAAACCAAACGACAAAAACAAAAACCACACAAACAAACATTCATATGAAAGTTATAACCGGTCTATGTAGGATATGTAAAGCTGTGCCCGTGTGTGTGTGTGTGTACGTGTGTTCATTGATGGCTACCAGAAAAAAACAGAGCTGAAAAACAAAGATGGCAAACACACAGAGTGAACAAAATTGGTGGGTTAGAAGAGGAAGAACGGATGCGACGCCATGGGAATGGGGGGAAG]
[+] EMBL BM585270 [CCGCCCACGCGTCCGACGGCACGCACACACACACACGCACACTCCCACCAACTGATTTTTTCCTCCATGTCCTATGTCGGAACAATATCCTTTTTTTCTACACAAAGAGTCGTTTGATATGGCATTTTAATTTTAGTTGAAGTTTTATTTCAACTGAAAACTGTAATCTTTTCCATTTTTATAAAACAATAATGTTACAACCATTACAAGCAAACTGTTACGCTTCTAAGAAATAAAAATAAAATTAAATAAAACAATTCATGGCAAAAGGCAAACATTACAATAAGGAAAGAGTCAATAAAATAACAAACACAATACAACAGATAAGAAAATCTTAACATGAAAATGGTAACTATGAATACACAAACTTTACAACACAAAATGTGCACCAACCTGTTCATAAACTAACGAACAAAAGCAAACATGCAAAGCAAGACGATAAAAGGAAAAGAAACTGAGTTGATAAACCAAACGACAAAAACAAAAACCACACAAACAAACATTCATATGAAAGTTATAACCGGTCTATGTAGGATATGTAAAGCTGTGCCCGTGTGTGTGTGTGTGTACGTGTGTTCATTGATGGCTACCAGAAAAAAACAGAGCTGAAAAACAAAGATGGCAAACACACAGAGTGAACAAAATTGGTGGGTTAGAAGAGGAAGAACGGATGCGACGCCATGGGAATGGGGGGAAG]
[+] EMBL BX611849 [ TAAGGTTACAACCATTACAAGCAAACGGTTACGCTTCTAAGAAATAAAAATAAAATTAAATAAAACAATTCAGGGCAAAAGGCAAACATTACAATAAGGAAAGAGTCAATAAAATAACAAACACAATACAACAGAAAAGAAAATCTTAACATGAAAATGGGAACTATGAATACACAAACTTTACAACACAAA ]
consensusID : consensus_6093#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 413 fasta sequence
[AGACACAGTCCCCAATTTAATACAGTTACATACACACACTACATACCCACTCACACACTCACACTTAAATTAGTTGTGTAGTAATTCCTTAAGGTAATTATGGAAATATATTATCAAATATTGTCGTACCGGAGGTGAGCAGTGATGTGAATTGAAGGGGTGGATTCATGGTGGGCGAAACGCAGTGCACGCAAACACCACACAAAACTCTAAAATAGTCTAACGGCACGCACACACACACACGCACACTCCCACCAACTGATTTTTTCCTCCATGTCCTATGTCGGAACAATATCCTTTTTTTCTACACAAAGAGTCGTTTGATATGGCATTTTAATTTTAGTTGAAGTTTTATTTCAACTGAAAACTGTAATCTTTTCCATTTTTATAAAACAATAATGTTACAACCATTA]
[+] EMBL BX612019 [AGACACAGTCCCCAATTTAATACAGTTACATACACACACTACATACCCACTCACACACTCACACTTAAATTAGTTGTGTAGTAATTCCTTAAGGTAATTATGGAAATATATTATCAAATATTGTCGTACCGGAGGTGAGCAGTGATGTGAATTGAAGGGGTGGATTCATGGTGGGCGAAACGCAGTGCACGCAAACACCACACAAAACTCTAAAATAGTCTAACGGCACGCACACACACACACGCACACTCCCACCAACTGATTTTTTCCTCCATGTCCTATGTCGGAACAATATCCTTTTTTTCTACACAAAGAGTCGTTTGATATGGCATTTTAATTTTAGTTGAAGTTTTATTTCAACTGAAAACTGTAATCTTTTCCATTTTTATAAAACAATAATGTTACAACCATTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6093#0 AACGGAAAAGAATATGGAAATGAAAGAGTGCTGGAAAGGGAGAGGAAAGAAAAAAATGGA 60
consensus_6093#2 ------------------------------------------------------------
consensus_6093#1 ------------------------------------------------------------
consensus_6093#0 AAACACTACGCAAAAGTAATAAAATAATGTTAAAAATAAATTGTTGTTGATAAAAAGTAA 120
consensus_6093#2 ------------------------------------------------------------
consensus_6093#1 ------------------------------------------------------------
consensus_6093#0 ACTAATTGATACAATGTAGTAGGAGGAGGAGTGGAAGGCAGCAAAAACAAAACATCACTT 180
consensus_6093#2 ------------------------------------------------------------
consensus_6093#1 ----------------------------------CCGCCCACGCGTCCGACGGCACGCAC 26
consensus_6093#0 TTATTAACGAAACAGTTTTGACGGTTCATGCGCGGAGCGGAACGTCATGTAAAACACAAC 240
consensus_6093#2 ------------------------------------------------------------
consensus_6093#1 ACACACACACGCACACTCCCACCAACTGATTTTTTCCTCCATGTCCTATGTCGGAACAAT 86
consensus_6093#0 TTACATAAATAAGAACACATTCACACACACACACACACACTACATACCCACTCACACACT 300
consensus_6093#2 AGACACAGTCCCCAATTTAAT-ACAGTTACATACACACACTACATACCCACTCACACACT 59
consensus_6093#1 ATCCTTTTTTTCTACACAAAGAGTCGTTTGATATG-GCATTTTAATTTTAGTTGAAGTTT 145
* * * * * ** * * * * * *
consensus_6093#0 CAC----ACTTAAATTAGTTGTGTAGT--AATTCCTTAAGGTAATTATGGAAATAT-ATT 353
consensus_6093#2 CAC----ACTTAAATTAGTTGTGTAGT--AATTCCTTAAGGTAATTATGGAAATAT-ATT 112
consensus_6093#1 TATTTCAACTGAAAACTGTAATCTTTTCCATTTTTATAAAACAATAATGTTACAACCATT 205
* *** *** ** * * * * ** *** *** *** * * ***
consensus_6093#0 ATCAA-ATATTGTCGTACCGGAGGTGAGCAGTGATGTGAATTGAAGGGGTGGATTCATGG 412
consensus_6093#2 ATCAA-ATATTGTCGTACCGGAGGTGAGCAGTGATGTGAATTGAAGGGGTGGATTCATGG 171
consensus_6093#1 ACAAGCAAACTGTTACGCTTCTAAGAAATAAAAATA-AAATTAAATAAAACAATTCATGG 264
* * * * *** * * * ** **** ** ********
consensus_6093#0 TGGGCGAAACGCAGTGCAC---GCAAACACCACACAAAACTCTAAA-ATAGTCTAACGG- 467
consensus_6093#2 TGGGCGAAACGCAGTGCAC---GCAAACACCACACAAAACTCTAAA-ATAGTCTAACGG- 226
consensus_6093#1 CAAAAGGCAAACATTACAATAAGGAAAGAGTCAATAAAATAACAAACACAATACAACAGA 324
* * ** * ** * *** * * **** *** * * * *** *
consensus_6093#0 CACGCACACACACACACGCACACTCCCACCA-----ACTGATTTTTTCCTCCATGTCCTA 522
consensus_6093#2 CACGCACACACACACACGCACACTCCCACCA-----ACTGATTTTTTCCTCCATGTCCTA 281
consensus_6093#1 TAAGAAAATCTTAACATGAAAATGGTAACTATGAATACACAAACTTTACAACACAAAATG 384
* * * * *** * * * ** * ** * *** * ** *
consensus_6093#0 TGTCGGAACAATATCCTTTTTTTCTACACAAAG--AGTCGTTTGATATGGCATTTTAATT 580
consensus_6093#2 TGTCGGAACAATATCCTTTTTTTCTACACAAAG--AGTCGTTTGATATGGCATTTTAATT 339
consensus_6093#1 TGCACCAACCTGTTCATAAACTAACGAACAAAAGCAAACATGCAAAGCAAGACGATAAAA 444
** *** ** * * ***** * * * * * ***
consensus_6093#0 TTAGTTGAAGTTTTATT--TCAACTGAAAACTGTAATCTTTTCCATTTTTATAAAACAAT 638
consensus_6093#2 TTAGTTGAAGTTTTATT--TCAACTGAAAACTGTAATCTTTTCCATTTTTATAAAACAAT 397
consensus_6093#1 GGAAAAGAAACTGAGTTGATAAACCAAACGACAAAAACAAAAACCACACAAACAAACATT 504
* *** * ** * *** ** ** * * * ***** *
consensus_6093#0 AATGTTACAACCATTACAAGCAAACTGTTACGCTTCTAAGAAATAAAAATAAAATTAAAT 698
consensus_6093#2 AATGTTACAACCATTA-------------------------------------------- 413
consensus_6093#1 CATATGAAAGTTATAACCGGTCTATGTAGGATATGTAAAGCTGTGCCCGTGTGTGTGTGT 564
** * * * ** *
consensus_6093#0 AAAACAATTCATGGCAAAAGGCAAACATTACAATAAGGAAAGAGTCAATAAAATAACGAA 758
consensus_6093#2 ------------------------------------------------------------
consensus_6093#1 GTGTACGTGTGTTCATTGATGGCTACCAGAAAAAAACAGAGCTGAAAAACAAAGATGGCA 624
consensus_6093#0 CACAATACAACAGATAAGAAAATCTTAACATGAAAATGGTAACTATGAATACACAAACTT 818
consensus_6093#2 ------------------------------------------------------------
consensus_6093#1 AACACACAGAGTGAACAAAATTGGTGGGTTAGAAGAGGAAGAACGGATGCGACGCCATGG 684
consensus_6093#0 TACAACACAAAATGTGCACCAACCTGTTCATAAACTAACGAACAAAAGCAAACATGCAAA 878
consensus_6093#2 ------------------------------------------------------------
consensus_6093#1 GAATGGGGGGAAG----------------------------------------------- 697
consensus_6093#0 GCAAGACGATAAAAGGAAAAGAAACTGAGTTGATAAACCAAACGACAAAAACAAAAACCA 938
consensus_6093#2 ------------------------------------------------------------
consensus_6093#1 ------------------------------------------------------------
consensus_6093#0 CACAAACAAACATTCACATGAAAGTTATAACCGGTCTATGTAGGATATGTAAAGCTGTGC 998
consensus_6093#2 ------------------------------------------------------------
consensus_6093#1 ------------------------------------------------------------
consensus_6093#0 CCTTGTGTGTGTGTGTGTACGTGTGTTCATTGA 1031
consensus_6093#2 ---------------------------------
consensus_6093#1 ---------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||