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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6100#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 987 fasta sequence
[TAATGATTAGTACCTACTTCTTCCACCAGTGACCGCTTCCACCAGGTGTAAAGATATGTCTAAAGGGGAAGGTGTGACACTATTCTTCTGCAATAATATTTAAATCTATAAGAAAACCGAGAGAGACCGTGGAAGGGAAGGAGGGAGAGAAACGTGCTTGTATTGTGAAGTAGGAAAGGCAAATACATCTTCAACTCTATCATAACTTTTATCCTTTATCTCTAATCTACATATATATCTAAAAACAAAACGAACAAAAAATCCCAACTATTTACTCAATTCCTGTTACAAACAACACACAAATACGTTTTGCTACGTTTTGAATCTACGGTTGACGATGACGATGAGGTGTAAACCCCCTGACTGATATAGCGTTAGTAAAGGCGGAAGATAGGGAGAGAGACACTTGGTGAGAAGAACCTATTACACACCCGAATGAGTAAGCGCGTGTACAGATGCGTCCGTATTTCTTTACTTCATATTGGAGTATGAGTTTTTAGCTGGTAGACTCAAGGTGATAGGGCGAAGAACGGAGACACGCGTTACACGAGCGTTACACACACATGTGGGCACGTGCGGCGTTCGGCGTTGCTTGTAGTTACAACACTTCCCTTTCGAACACGCTCTTTGGCTTGGTTTCATTTTCACTTTCGATATTAATGTTGTTACTAATTGAAAATACAAAATCAAACTATCGTATCAGTTCAGTTTTGTTTACGTGAACGCTGGCAGGTATCATCCGTTAGGGGAGGGATTGTCTTAAATTATATATCTTACGCAAACTGTAGAAGCTGTGGGGAAGAGGATGAGCAGCATAATAGTACATGAGGGGAACACACGGAACGCAACAAGTCTCTATCTACAGCATAAAGTTAACAAACCGCAAACCCAGGAGCAGAACAGAGACTCATGTAATGGTTCATTTCGTTTATCACAACCTTTGATTGCTGGTGAACAGTATTAATGAGAATAAAAATATTGCGTCCC]
[+] EMBL CNS090QE [TAATGATTAGTACCTACTTCTTCCACCAGTGACCGCTTCCACCAGGTGTAAAGATATGTCTAAAGGGGAAGGTGTGACACTATTCTTCTGCAATAATATTTAAATCTATAAGAAAACCGAGAGAGACCGTGGAAGGGAAGGAGGGAGAGAAACGTGCTTGTATTGTGAAGTAGGAAAGGCAAATACATCTTCAACTCTATCATAACTTTTATCCTTTATCTCTAATCTACATATATATCTAAAAACAAAACGAACAAAAAATCCCAACTATTTACTCAATTCCTGTTACAAACAACACACAAATACGTTTTGCTACGTTTTGAATCTACGGTTGACGATGACGATGAGGTGTAAACCCCCTGACTGATATAGCGTTAGTAAAGGCGGAAGATAGGGAGAGAGACACTTGGTGAGAAGAACCTATTACACACCCGAATGAGTAAGCGCGTGTACAGATGCGTCCGTATTTCTTTACTTCATATTGGAGTATGAGTTTTTAGCTGGTAGACTCAAGGTGATAGGGCGAAGAACGGAGACACGCGTTACACGAGCGTTACACACACATGTGGGCACGTGCGGCGTTCGGCGTTGCTTGTAGTTACAACACTTCCCTTTCGAACACGCTCTTTGGCTTGGTTTCATTTTCACTTTCGATATTAATGTTGTTACTAATTGAAAATACAAAATCAAACTATCGTATCAGTTCAGTTTTGTTTACGTGAACGCTGGCAGGTATCATCCGTTAGGGGAGGGATTGTCTTAAATTATATATCTTACGCAAACTGTAGAAGCTGTGGGGAAGAGGATGAGCAGCATAATAGTACATGAGGGGAACACACGGAACGCAACAAGTCTCTATCTACAGCATAAAGTTAACAAACCGCAAACCCAGGAGCAGAACAGAGACTCATGTAATGGTTCATTTCGTTTATCACAACCTTTGATTGCTGGTGAACAGTATTAATGAGAATAAAAATATTGCGTCCC]
[-] EMBL CNS090QF [ GTCTAAAGGGGAAGGTGTGACACTATTCTTCTGCAATAATATTTAAATCTATAAGAAAACCGAGAGAGACCGTGGAAGGGAAGGAGGGAGAGAAACGTGCTTGTATTGTGAAGTAGGAAAGGCAAATACATCTTCAACTCTATCATAACTTTTATCCTTTATCTCTAATCTACATATATATCTAAAAACAAAACGAACAAAAAATCCCAACTATTTACTCAATTCCTGTTACAAACAACACACAAATACGTTTTGCTACGTTTTGAATCTACGGTTGACGATGACGATGAGGTGTAAACCCCCTGACTGATATAGCGTTAGTAAAGGCGGAAGATAGGGAGAGAGACACTTGGTGAGAAGAACCTATTACACACCCGAATGAGTAAGCGCGTGTACAGATGCGTCCGTATTTCTTTACTTCATATTGGAGTATGAGTTTTTAGCTGGTAGACTCAAGGTGATAGGGCGAAGAACGGAGACACGCGTTACACGAGCGTTACACACACATGTGGGCACGTGCGGCGTTCGGCGTTGCTTGTAGTTACAACACTTCCCTTTCGAACACGCTCTTTGGCTTGGTTTCATTTTCACTTTCGATATTAATGTTGTTACTAATTGAAAATACAAAATCAAACTATCGTATCAGTTCAGTTTTGTTTACGTGAACGCTGGCAGGTATCATCCGTTAGGGGAGGGATTGTCTTAAATTATATATCTTACGCAAACTGTAGAAGCTGTGGGGAAGAGGATGAGCAGCATAATAGTACATGAGGGGAACACACGGAACGCAACAAGTCTCTATCTACAGCATAAAGTTAACAAACCGCAAACCCAGGAGCAGAACAGAGACTCATGTAATGGTTCATTTCGTTTATCACAACCTTTGATTGCTGGTGAACAGTATTAATGAGAATAAAAATATT CGTCCC]
[+] EMBL BX609146 [ GTAAAGGCGGAAG AGGGAGAGAGACACTTGGTGAGAAGAACCTATTACACACCCGAATGAGTAAGCGCGTGTACAGATGCGTCCGTATTTCTTTACTTCATATTGGAGTATGAGTTTTTAGCTGTTAGACTCAAGGTGATAGGGCGAAGAACGGAGACACGCGTTACACGAGCGTTACACACACATGTGGGCACGTGCGGCGTTCGGCGTTGCTTGTAGTTACAACACTTCCCTTTCGAACACGCTCTTTGGCTTGGTTTCATTTTCACTTTCGATATTAATGTTGTTACTAATTGAAAATACAAAATCAAACTATCGTATCAGTTCAGTTTTGTTTACGTGAACGCTGGCAGGTATCATCCGTTAGGGGAGGGATTGTCTTAAATTATATATCTTACGCAAACTGTAGAAGCTGTGGGGAAGAGGATGAGCAGCATAATAGTACATGAGGGGAACACACGGAACGCAACAAGTCTCTATCTACAGCATAAAGTTAACAAACCGCAAACCCATGAGCAGAACAGAGACTCATGTAATGGTTCATTTCGTTTATCACAACCTTTGATTGCTGGTGAACAGTAT ]
consensusID : consensus_6100#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 734 fasta sequence
[TGCTCAGCACATCGCCGAGGTTAGTATATTATTATTTTATATTAATTAAATGGGTGATCATCAGCGCAGTAGGCCAGGTGGCGAGTAGTGAGGAAAGCATGCATTTAAAGATATGTAAGAGCGTTCAAAGGACAGAGAGAAGCAAGGCAAATTGAGCGCGAGGTGGCGAAGAATCACCACCACCCCCCAACAGTGAGAGTGTATAATCTCAGCAAAAAGGCGTTATTTTTTTAAAAAGGATTCGTTTGTTGTCGTAGACAACGGTTAATGATTAGTACCTACTTCTTCCACCAGTGACCGCTTCCACCAGGTGTAAAGATATGTCTAAAGGGGAAGNGTGTGACACTATTCTTCTGCAATAATATTTAAACTCTATAAGAAAACCGAGAGAGACCGTGGAAGGGAAGGAGGGAGAGAAACGTGCTTGTATTGTGAAGTAGGAAAGGCAAATACATCTTCCACCTCTATCATAACTTTGTATCCTTTATCTCGTAAGTCTACATATAGTAGTCTAGANGAGACAAAACGGAACGAAGAAAATCCCCAGACGTAATTCTCACGTCAAGTTCCCGTGGTNACAAGACAANCGAANAGCGAAAGTAGCNGTTTGTGCCTACGGCTTTTGAGGAAGTCGTACCGGGTTTGAACGACTGACCGAATTGAGGGTGTTAACACCNCCNCTGGACCGAANNATAGCGTTNAGTAAAGGCGGGACNCGATNTCNCGGGGAGAAG]
[+] EMBL AL934952 [TGCTCAGCACATCGCCGAGGTTAGTATATTATTATTTTATATTAATTAAATGGGTGATCATCAGCGCAGTAGGCCAGGTGGCGAGTAGTGAGGAAAGCATGCATTTAAAGATATGTAAGAGCGTTCAAAGGACAGAGAGAAGCAAGGCAAATTGAGCGCGAGGTGGCGAAGAATCACCACCACCCCCCAACAGTGAGAGTGTATAATCTCAGCAAAAAGGCGTTATTTTTTTAAAAAGGATTCGTTTGTTGTCGTAGACAACGGTTAATGATTAGTACCTACTTCTTCCACCAGTGACCGCTTCCACCAGGTGTAAAGATATGTCTAAAGGGGAAGNGTGTGACACTATTCTTCTGCAATAATATTTAAACTCTATAAGAAAACCGAGAGAGACCGTGGAAGGGAAGGAGGGAGAGAAACGTGCTTGTATTGTGAAGTAGGAAAGGCAAATACATCTTCCACCTCTATCATAACTTTGTATCCTTTATCTCGTAAGTCTACATATAGTAGTCTAGANGAGACAAAACGGAACGAAGAAAATCCCCAGACGTAATTCTCACGTCAAGTTCCCGTGGTNACAAGACAANCGAANAGCGAAAGTAGCNGTTTGTGCCTACGGCTTTTGAGGAAGTCGTACCGGGTTTGAACGACTGACCGAATTGAGGGTGTTAACACCNCCNCTGGACCGAANNATAGCGTTNAGTAAAGGCGGGACNCGATNTCNCGGGGAGAAG]
consensusID : consensus_6100#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 647 fasta sequence
[CCGGCAACAGGACCGACGCCGGTTGCACTACCATCTGGCCAGTATCTTCCCGGAAGATCAAGTGCAAACCGTCATGCAGATGTACCCGGACGAGACGAATCCCCAGACAATATGTGCCGCCATCTTGGCCATGTATCAAAAGATGTAAAGCGTCGGATCTGCGATGGACGCATGCAATACTCAAAACACTCCTTAGGTGTTAGGCAAAATTATACTGTTCTTTATTACTCTTTCTTTCCCTATCTCTCTGCTTCCGTTGGAGATGCATGAGAGGAACCCGATCGGGTTGGCAATACTGTGTGCCCTTGTACTTTTGTTTGTTACGACTGCAAGTTACGACTTATCGCGAAAGAGAGAGTGAGAGCGAGAGAGTGTGTGTAGAGAGAGGTTATATTATTATTTTATATTAATTAAATGGGTGATCATCAGCGCAGTAGGCCAGGTGGCGAGTAGTGAGGAAAGCATGCATTTAAAGATATGTAAGAGCGTTCAAAGGACAGAGAGAAGCAAGGCAAATTGAGCGCGAGGTGGCGAAGAATCACCACCACCCCCCAACAGTGAGAGTGTATAATCTCAGCAAAAAGGCGTTATTTTTTTAAAAAGGATTCGTTTGTTGTCGTAGACCACGGTTAATGATTAGTACCTAC]
[+] EMBL BM613409 [CCGGCAACAGGACCGACGCCGGTTGCACTACCATCTGGCCAGTATCTTCCCGGAAGATCAAGTGCAAACCGTCATGCAGATGTACCCGGACGAGACGAATCCCCAGACAATATGTGCCGCCATCTTGGCCATGTATCAAAAGATGTAAAGCGTCGGATCTGCGATGGACGCATGCAATACTCAAAACACTCCTTAGGTGTTAGGCAAAATTATACTGTTCTTTATTACTCTTTCTTTCCCTATCTCTCTGCTTCCGTTGGAGATGCATGAGAGGAACCCGATCGGGTTGGCAATACTGTGTGCCCTTGTACTTTTGTTTGTTACGACTGCAAGTTACGACTTATCGCGAAAGAGAGAGTGAGAGCGAGAGAGTGTGTGTAGAGAGAGGTTATATTATTATTTTATATTAATTAAATGGGTGATCATCAGCGCAGTAGGCCAGGTGGCGAGTAGTGAGGAAAGCATGCATTTAAAGATATGTAAGAGCGTTCAAAGGACAGAGAGAAGCAAGGCAAATTGAGCGCGAGGTGGCGAAGAATCACCACCACCCCCCAACAGTGAGAGTGTATAATCTCAGCAAAAAGGCGTTATTTTTTTAAAAAGGATTCGTTTGTTGTCGTAGACCACGGTTAATGATTAGTACCTAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6100#0 ------------------------TA-ATGATTAGTACCTACTTCTTCCACCAGTGACCG 35
consensus_6100#1 TGCTCAGCACATCGCCGAGGTTAGTATATTATTATTTTATATTAATTAAATGGGTGATCA 60
consensus_6100#2 -------------------------------CCGGCAAC-AGGACCGACGCCGGTTG-CA 27
* ** *
consensus_6100#0 CTTCCACCAGGTGTAAAGATATGTCTAAAGGGGAAGGTGTGACACTATTCTTCTGCAATA 95
consensus_6100#1 TCAGCGCAGTAGGCCAGGTGGCGAGTAGTGAGGAAAGCATGCATTTAAAGATATGTAAGA 120
consensus_6100#2 CTACCATCTG--GCCAGTATCTTCCCGGAAGATCAAGTGCAA----ACCGTCATGCAGAT 81
* * * * * * ** *
consensus_6100#0 ATATTTAAATCTATAAGAAAACCGAGAGAGACCGTGGAAGGGAAGGAGGGAGAGAAACGT 155
consensus_6100#1 GCGTTCAAAGGACAGAGAGAAGCAAGGCAAA---TTGAGCGCGAGGTGGCGAAGAATCA- 176
consensus_6100#2 GTACCCGGA-CGAGACGAATCCCCAGACAATATGTGCCGCCATCTTGGCCATGTATCAAA 140
* ** * ** * * * *
consensus_6100#0 GCTTGTATTGTGAAGTAGGAAAGGCAAATACATCTTCAACTCTATCATAACTTTTATCCT 215
consensus_6100#1 -CCACCACCCCCCAACAGTGAGAGT--GTATAATCTCAGC---AAAAAGGCGTTATTTTT 230
consensus_6100#2 AGATGTAAAGCGTCGGATCTGCGATGGACGCATGCAATACTC-AAAACACTCCTTAGGTG 199
* * * * * * *
consensus_6100#0 TTATCTCTAATCTACATATATATCTAAAAACAAAACGAACAAAAAATCCCAACTATTTAC 275
consensus_6100#1 TTAAAAAGGATTCGTTTGT-TGTCGTAGACAACGGTTAATGATTAGTACCTACTTCTTCC 289
consensus_6100#2 TTAGGCAAAATTATACTGT-TCTTTATTACTCTTTCTTTC-------CCTATCTCTCTGC 251
*** ** * * * * * * ** * *
consensus_6100#0 -TCAATTCCTGTTACAAACAA-CACACAAATACGTTTTGCTACGTTTTGAATCT----AC 329
consensus_6100#1 ACCAGTGACCGCTTCCACCAGGTGTAAAGATATGTCTAAAGGGGAAGNGTGTG-----AC 344
consensus_6100#2 TTCCGTTGGAGATGCATGAGAGGAACCCGATCGGGTTGGCAATACTGTGTGCCCTTGTAC 311
* * * * * ** * * * **
consensus_6100#0 GGTTGACGATGACGATGAGGTGTAAACCCCCTGACTGATATAGCGTTAGTAAAGGCGGAA 389
consensus_6100#1 ACTATTCTTCTGCAATAATATTTAAACTCTATAA---GAAAACCGAGAGAGACCGTGGAA 401
consensus_6100#2 TTTTGTTTGTTACGACTGCAAGTTA--CGACTTATCGCGAAAGAGAGAGTGAGAGCGAGA 369
* * * * * * * * * * ** * * * *
consensus_6100#0 GATAGGGAG-AGAGACACTTGGTGAGAAGAACCTATTACAC-ACCCGAATGAGTAAGCGC 447
consensus_6100#1 GGGAAGGAG-GGAGAGA------AACGTGCTTGTATTGTGA-AGTAGGAAAGGCAAATAC 453
consensus_6100#2 GAGTGTGTGTAGAGAGA---GGTTATATTATTATTTTATATTAATTAAATGGGTGATCAT 426
* * * **** * * * ** * * * *
consensus_6100#0 GTGTACAGATGCGTCCGTATTTCTTTACTTCATATTGGAGTATGAGTTTTTAGCTGGTAG 507
consensus_6100#1 ATCTTCCACCTCTATCATAACTTTGTATCCTTTATCT---CGTAAGTCTACATATAGTAG 510
consensus_6100#2 CAGCGCAGTAGGCCAGGTGGCGAGTAGTGAGGAAAGCATGCATTTAAAGATATGTAAGAG 486
* * * * * * **
consensus_6100#0 ACTCAAGGTGATAGGGCGAAGAACGG-AGA-----CACGCGTTACACGAGCGTTACACAC 561
consensus_6100#1 TCTAGANGAGACAAAACGGAACGAAG-AAAATCCCCAGACGTAATTCTCACGTCAAGTTC 569
consensus_6100#2 CGTTCAAAGGACAGAGAGAAGCAAGGCAAATTGAGCGCGAGGTGGCGAAGAATCACCACC 546
* * ** * * * * * * * * * * *
consensus_6100#0 ACATGTGGGCACGTGCGGCGTTCGGCGTTGCTTGTAGTTACAACACTTCCCTTTCGAACA 621
consensus_6100#1 CCGTGGTNACAAGACAANCGAANAGCGAAAGTAGCNGTTTGTGCCTACGGCTTTTGAGGA 629
consensus_6100#2 ACCCCCCAACAGTGAGAGTGTATAATCTCAGCAAAAA----GGCGTTATTTTTTTAAAAA 602
* ** * * *** * *
consensus_6100#0 CGCTCTTTGGCTTGGTTTCATTTTCACTTTCGATATTAATGTTGTTACTAATTGAAAATA 681
consensus_6100#1 AGTCGT---ACCGGGTTTGAAC--GACTGACCGAATTGAGGGTGTTAACACCN----CCN 680
consensus_6100#2 GGATTC---GTTTGTTGTCGTA--GACCACGGTTAATGA--TTAGTACCTAC-------- 647
* * * * ** * * * * **
consensus_6100#0 CAAAATCAAACTATCGTATCAGTTCAGTTTTGTTTACGTGAACGCTGGCAGGTATCATCC 741
consensus_6100#1 CTGGACCGAANNATAGCGTTNAGTAAAGGCGGGACNCGATNTCNCGGGGAGAAG------ 734
consensus_6100#2 ------------------------------------------------------------
consensus_6100#0 GTTAGGGGAGGGATTGTCTTAAATTATATATCTTACGCAAACTGTAGAAGCTGTGGGGAA 801
consensus_6100#1 ------------------------------------------------------------
consensus_6100#2 ------------------------------------------------------------
consensus_6100#0 GAGGATGAGCAGCATAATAGTACATGAGGGGAACACACGGAACGCAACAAGTCTCTATCT 861
consensus_6100#1 ------------------------------------------------------------
consensus_6100#2 ------------------------------------------------------------
consensus_6100#0 ACAGCATAAAGTTAACAAACCGCAAACCCAGGAGCAGAACAGAGACTCATGTAATGGTTC 921
consensus_6100#1 ------------------------------------------------------------
consensus_6100#2 ------------------------------------------------------------
consensus_6100#0 ATTTCGTTTATCACAACCTTTGATTGCTGGTGAACAGTATTAATGAGAATAAAAATATTG 981
consensus_6100#1 ------------------------------------------------------------
consensus_6100#2 ------------------------------------------------------------
consensus_6100#0 CGTCCC 987
consensus_6100#1 ------
consensus_6100#2 ------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||