These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6104#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 953 fasta sequence [GGTGAAATTCATTTTCGCTGCGTCGGGGAAAAGATCTCCTAAACACACC-GAAAAACGCTCCTAA-TTCACAATGAAAATCACCAAACACAAGAAAACTCGTAAGTATATGAGTTTTTACATCAACAACTTTGGATTTCGCGAACCACTGCTCGTGCTGATCGATGGAAGCTTCTGCCATGCAGCGTACAAGATCCGCCTGCAAATAGAAGAGCAGCTAAAAAAGTACTTCCAGTGTGAGGTAAAGCCCATCGTCACGGCATGCATCATCACCGAGACGGACAATCTCGGACCGGGCTTCACGGGCACCAGTCAGCTGCTGAAGAAATTCCTCGTACATCGCTGCGGCCACGAGAAGCGACCGCTCGACGGTTCGTCCTGCATCAAATCCATGACCAAATCGTGCCACTACATCGTTGCCACGCAGGACCGAGCGCTGCAGGAGTGGGTCCGCGAGCATCCGGGAATACCGCTTTTCTACCTGCACAATGCATCCGTCCCCACGCTGGTCCAACCGTCGGAGGCCCACCGTCA-GCGGCTGCGGAAGGGCAGAAGAATCGGGTAGGCATTCGTGAACTTGATCAGCAAACGATACAAAAGCTAAAAGTGAAGGAAGGGCTCGTTGCGCCCGAATCGAACGGTGGCCCCAAGAAGAAGCGAAAGGTGAAAAACCCCAACCCGCTGTCGTGTAAAAAGCCCAAAAAGACGAAAAAGGGGGTGGAAGGAAAGGGAACACCGTCGGAGAGCAAGCCACCCACCGTGGGGGAGGGTGGAGTGGTAAAGAAAAAGAGCAGAAAGCGCATCAAGCTGCCGAAACACGTCATCGAGCATCTGAAAGCCGGCAACGGTGGGTGGTGCTGGGGCGTCATAAATGTAAGCAAAAACTGTAAAATAAAATTCGGCAATTAAAGCTCATTGAAAAAAAAAAAAAAAAAAAAAAAAAGGCCAAATGTTCC] [+] EMBL CNS095QR [GGTGAAATTCATTTTCGCTGCGTCGGGGAAAAGATCTCCTAAACACACCACAAAAACGCTCCTAA TTCACAATGAAAATCACCAAACACAAGAAAACTCGTAAGTATATGAGTTTTTACATCAACAACTTTGGATTTCGCGAACCACTGCTCGTGCTGATCGATGGAAGCTTCTGCCATGCAGCTTACAAGATCCGCCTGCAAATAGAAGAGCAGCTAAAAAAGTACTTCCAGTGTGAGGTAAAGCCCATCGTCACGGCATGCATCATCACCGAGACGGACAATCTCGGACCGGGCTTCACGGGCACCAGTCAGCTGCTGAAGAAATTCCTCGTACATCGCTGCGGCCACGAGAAGCGACCGCTCGACGGTTCGTCCTGCATCAAATCCATGACCAAATCGTGCCACTACATCGTTGCCACGCAGGACCGAGCGCTGCAGGAGTGGGTCCGCGAGCATCCGGGAATACCGCTTTTCTACCTGCACAATGCATCCGTCCCCACGCTGGTCCAACCGTCGGAGGCCCACCGTCA GCGGCTGCGGAAGGGCAGAAGAATCGGGTAGGCATTCGTGAACTTGATCAGCAAACGATACAAAAGCTAAAAGTGAAGGAAGGGCTCGTTGCGCCCGAATCGAACGGTGGCCCCAAGAAGAAGCGAAAGGTGAAAAACCCCAACCCGCTGTCGTGTAAAAAGCCCAAAAAGACGAAAAAGGGGGTGGAAGGAAAGGGAACACCGTCGGAGAGCAAGCCACCCACCGTGGGGGAGGGTGGAGTGGTAAAGAAAAAGAGCAGAAAGCGCATCAAGCTGCCGAAACACGTCATCGAGCATCTGAAAGCCGGCAACGGTGGGTGGTGCTGGGGCGTCATAAATGTAAGCAAAAACTGTAAAATAAAATTCGGCAATTAAAGCTCATTGAAAAAAAAAAAAAAAAAAAAAAAAAGGCCAAATGTTCC] [+] EMBL BM605966 [ ccgcCCAAAACACACC GAAAAACGCTCCTAA TTCACAATGAAAATCACCAAACACAAGAAAACTCGTAAGTATATGAGTTTTTACATCAACAACTTTGGATTTCGCGAACCACTGCTCGTGCTGATCGATGGAAGCTTCTGCCATGCAGCGTACAAGATCCGCCTGCAAATAGAAGAGCAGCTAAAAAAGTACTTCCAGTGTGAGGTAAAGCCCATCGTCACGGCATGCATCATCACCGAGACGGACAATCTCGGACCGGGCTTCACCGGCACCAGTCAGTTGTTGAAGAAATTCCTCGTACATCGCTGCGGCCACGAGAAGCGACCGCTCGACGGTTCGTCCTGCATCAAATCCATGACCAAATCGTGCCACTACATCGTTGCTACGCAGGACCGAGCGCTGCAGGAGTGGGTTCGCGAGCATCCGGGTATACCGCTTTTCTACCTGCACAACTCATCCGTCCCCACGCTGGTCCAACCGTCGGAGGCCCACCGTCAGGCGGCTGCAGAAGGGCAGAAGAGTCGGGTAGGAATTCGTGAACTTGATCAGCAAACGATACAAAAGCTAAAAGTGAAGGAAGGGCTCGTTGCGCCCGAATCGAACGGTGGCCCCAAGAAGAAGCGAAAGGTGAAAAACCCCAACCCGCTGTCGTGT AAAAGCCCAAAAAGACGAAAAAGGGGGTGGACGGAAAGGGGACGCCGTCGGAGAGCAAGCCACCCACCGTGGG ] [+] EMBL CNS08PX0 [ AAACACACC GAAAAACGCTCCTAATTTCACAATGAAAATCACCAAACACAAGAAAACTCGTAAGTATATGAGTTTTTACATCAACAACTTTGGATTTCGCGAACCACTGCTCGTGCTGATCGATGGAAGCTTCTGCCATGCAGCGTACAAGATCCGCCTGCAAATAGAAGAGCAG ] consensusID : consensus_6104#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 862 fasta sequence [GAAAATCACCAAACACAAGAAAACTCGTAAGTATATGAGTTTTTACATCAACAACTTTGGTTTTCGCGAACCACTGCTCGTGCTGATCGATGGAAGCTTTTGCCATGCAGCTTACAAGATCCGCCTGCAAATAGAAGAGCAGCTAAAAAAGTACTTCCAGTGTGAGGTAAAGCCCATCGTCACGGCATGCATCATCACCGAAACGGACAATCTCGGACCGGGCTTTACGGGCACCAGTCAGCTGCTGAAGAAATTCCTCGTACATCGCTGCGGGCCACGAGAAGCGACCGCTCGACGGTTCGTCCTGCATCAAATCCATGACCAAATCGTGCCACTAAATCGTTGCCACGCAGGACCGAGCGCTGCAGGAGTGGGTCCGCGAGCATCCGGGAATACCGCTTTTCTACCTGCAAAATGCATCCGTCCCCACGCTGGTCCAACCGTCGGAGGCCCACCGTCAGGCGGCTGCGGAAGGGCAGAAGAATCGGGTAGGCATTCGTGAACTTGATCAGCAAACGATACAAAAGCTAAAAGTGAAGGAAGGGCTCGTTGCGCCCGAATCGAACGGTGGCCCCAAGAAGAAGCGAAAGGTGAAAAACCCCAACCCGCTGTCGTGTAAAAAGCCCAAAAAGACGAAAAAGGGGGTGGAAGGAAAGGGAAAACCGTCGGAGAGCAAGCCACCCACCGTGGGGGAGGGTGGAGTGGTAAAGAAAAAGAGCAGAAAGCGCATCAAGCTGCCGAAACACGTCATCGAGCATCTGAAAGCCCGCAACGGTGGTGGTGCTGGGGCGTCATAAATGTAAGCAAAAACTGTAAAATAAAATTCGGCAATTAAAAATCAAAAACCCCCCCCCCCCCCCCC] [-] EMBL CNS095QS [GAAAATCACCAAACACAAGAAAACTCGTAAGTATATGAGTTTTTACATCAACAACTTTGGTTTTCGCGAACCACTGCTCGTGCTGATCGATGGAAGCTTTTGCCATGCAGCTTACAAGATCCGCCTGCAAATAGAAGAGCAGCTAAAAAAGTACTTCCAGTGTGAGGTAAAGCCCATCGTCACGGCATGCATCATCACCGAAACGGACAATCTCGGACCGGGCTTTACGGGCACCAGTCAGCTGCTGAAGAAATTCCTCGTACATCGCTGCGGGCCACGAGAAGCGACCGCTCGACGGTTCGTCCTGCATCAAATCCATGACCAAATCGTGCCACTAAATCGTTGCCACGCAGGACCGAGCGCTGCAGGAGTGGGTCCGCGAGCATCCGGGAATACCGCTTTTCTACCTGCAAAATGCATCCGTCCCCACGCTGGTCCAACCGTCGGAGGCCCACCGTCAGGCGGCTGCGGAAGGGCAGAAGAATCGGGTAGGCATTCGTGAACTTGATCAGCAAACGATACAAAAGCTAAAAGTGAAGGAAGGGCTCGTTGCGCCCGAATCGAACGGTGGCCCCAAGAAGAAGCGAAAGGTGAAAAACCCCAACCCGCTGTCGTGTAAAAAGCCCAAAAAGACGAAAAAGGGGGTGGAAGGAAAGGGAAAACCGTCGGAGAGCAAGCCACCCACCGTGGGGGAGGGTGGAGTGGTAAAGAAAAAGAGCAGAAAGCGCATCAAGCTGCCGAAACACGTCATCGAGCATCTGAAAGCCCGCAACGGTGGTGGTGCTGGGGCGTCATAAATGTAAGCAAAAACTGTAAAATAAAATTCGGCAATTAAAAATCAAAAACCCCCCCCCCCCCCCCC] consensusID : consensus_6104#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 362 fasta sequence [GCGTGCAACACGCAGTTTTCGCTGCCGTCGGGGAAAAGATCTCCCAAAACACACCGAAAAACGCTCCTAATTCACAATGAAAATCACCAAACACAAGAAAACTCCGTTAAGTATATGAGTTTTTACATCAACCAACTTTGGANTTCGCGAAACCACCTGTATCGTGCCTGAATCGATGGAAGCTTCTGCCATGCAGCCGTACAAGATCCCGCCTGCAAATAGAAGAGCAGCTAAAAAAGTACTTCCAGTGTGAGGTAAAGCCCATCGTCACGGCATGCATCATCACCGAGAACGGACAATTCTCGGACCGGGGCTTCACCGGCACCAAGTCAGTTGTTGAAGAAATTCCTCGTACATCCGCT] [+] EMBL CF541886 [GCGTGCAACACGCAGTTTTCGCTGCCGTCGGGGAAAAGATCTCCCAAAACACACCGAAAAACGCTCCTAATTCACAATGAAAATCACCAAACACAAGAAAACTCCGTTAAGTATATGAGTTTTTACATCAACCAACTTTGGANTTCGCGAAACCACCTGTATCGTGCCTGAATCGATGGAAGCTTCTGCCATGCAGCCGTACAAGATCCCGCCTGCAAATAGAAGAGCAGCTAAAAAAGTACTTCCAGTGTGAGGTAAAGCCCATCGTCACGGCATGCATCATCACCGAGAACGGACAATTCTCGGACCGGGGCTTCACCGGCACCAAGTCAGTTGTTGAAGAAATTCCTCGTACATCCGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6104#0 ------GGTGAAATTCATTTTCGCTGCGTCGGGGAAAAGATCTCCTAAACACACCGAAAA 54 consensus_6104#1 ------------------------------------------------------------ consensus_6104#2 GCGTGCAACACGCAGTTTTCGCTGCCGTCGGGGAAAAGATCTCCCAAAACACACCGAAAA 60 consensus_6104#0 ACGCTCCTAATTCACAATGAAAATCACCAAACACAAGAAAACTCG--TAAGTATATGAGT 112 consensus_6104#1 ------------------GAAAATCACCAAACACAAGAAAACTCG--TAAGTATATGAGT 40 consensus_6104#2 ACGCTCCTAATTCACAATGAAAATCACCAAACACAAGAAAACTCCGTTAAGTATATGAGT 120 ************************** ************* consensus_6104#0 TTTTACATCAAC-AACTTTGGATTTCGCGAA-CCAC-TGC-TCGTGCT--GATCGATGGA 166 consensus_6104#1 TTTTACATCAAC-AACTTTGGTTTTCGCGAA-CCAC-TGC-TCGTGCT--GATCGATGGA 94 consensus_6104#2 TTTTACATCAACCAACTTTGGANTTCGCGAAACCACCTGTATCGTGCCTGAATCGATGGA 180 ************ ******** ******** **** ** ****** ********* consensus_6104#0 AGCTTCTGCCATGCAGCG-TACAAGATCC-GCCTGCAAATAGAAGAGCAGCTAAAAAAGT 224 consensus_6104#1 AGCTTTTGCCATGCAGCT-TACAAGATCC-GCCTGCAAATAGAAGAGCAGCTAAAAAAGT 152 consensus_6104#2 AGCTTCTGCCATGCAGCCGTACAAGATCCCGCCTGCAAATAGAAGAGCAGCTAAAAAAGT 240 ***** *********** ********** ****************************** consensus_6104#0 ACTTCCAGTGTGAGGTAAAGCCCATCGTCACGGCATGCATCATCACCGA-GACGGACAAT 283 consensus_6104#1 ACTTCCAGTGTGAGGTAAAGCCCATCGTCACGGCATGCATCATCACCGA-AACGGACAAT 211 consensus_6104#2 ACTTCCAGTGTGAGGTAAAGCCCATCGTCACGGCATGCATCATCACCGAGAACGGACAAT 300 ************************************************* ********* consensus_6104#0 -CTCGGACCGGG-CTTCACGGGCACCA-GTCAGCTGCTGAAGAAATTCCTCGTACATC-G 339 consensus_6104#1 -CTCGGACCGGG-CTTTACGGGCACCA-GTCAGCTGCTGAAGAAATTCCTCGTACATC-G 267 consensus_6104#2 TCTCGGACCGGGGCTTCACCGGCACCAAGTCAGTTGTTGAAGAAATTCCTCGTACATCCG 360 *********** *** ** ******* ***** ** ********************* * consensus_6104#0 CTGCGG-CCACGAGAAGCGACCGCTCGACGGTTCGTCCTGCATCAAATCCATGACCAAAT 398 consensus_6104#1 CTGCGGGCCACGAGAAGCGACCGCTCGACGGTTCGTCCTGCATCAAATCCATGACCAAAT 327 consensus_6104#2 CT---------------------------------------------------------- 362 ** consensus_6104#0 CGTGCCACTACATCGTTGCCACGCAGGACCGAGCGCTGCAGGAGTGGGTCCGCGAGCATC 458 consensus_6104#1 CGTGCCACTAAATCGTTGCCACGCAGGACCGAGCGCTGCAGGAGTGGGTCCGCGAGCATC 387 consensus_6104#2 ------------------------------------------------------------ consensus_6104#0 CGGGAATACCGCTTTTCTACCTGCACAATGCATCCGTCCCCACGCTGGTCCAACCGTCGG 518 consensus_6104#1 CGGGAATACCGCTTTTCTACCTGCAAAATGCATCCGTCCCCACGCTGGTCCAACCGTCGG 447 consensus_6104#2 ------------------------------------------------------------ consensus_6104#0 AGGCCCACCGTCAG-CGGCTGCGGAAGGGCAGAAGAATCGGGTAGGCATTCGTGAACTTG 577 consensus_6104#1 AGGCCCACCGTCAGGCGGCTGCGGAAGGGCAGAAGAATCGGGTAGGCATTCGTGAACTTG 507 consensus_6104#2 ------------------------------------------------------------ consensus_6104#0 ATCAGCAAACGATACAAAAGCTAAAAGTGAAGGAAGGGCTCGTTGCGCCCGAATCGAACG 637 consensus_6104#1 ATCAGCAAACGATACAAAAGCTAAAAGTGAAGGAAGGGCTCGTTGCGCCCGAATCGAACG 567 consensus_6104#2 ------------------------------------------------------------ consensus_6104#0 GTGGCCCCAAGAAGAAGCGAAAGGTGAAAAACCCCAACCCGCTGTCGTGTAAAAAGCCCA 697 consensus_6104#1 GTGGCCCCAAGAAGAAGCGAAAGGTGAAAAACCCCAACCCGCTGTCGTGTAAAAAGCCCA 627 consensus_6104#2 ------------------------------------------------------------ consensus_6104#0 AAAAGACGAAAAAGGGGGTGGAAGGAAAGGGAACACCGTCGGAGAGCAAGCCACCCACCG 757 consensus_6104#1 AAAAGACGAAAAAGGGGGTGGAAGGAAAGGGAAAACCGTCGGAGAGCAAGCCACCCACCG 687 consensus_6104#2 ------------------------------------------------------------ consensus_6104#0 TGGGGGAGGGTGGAGTGGTAAAGAAAAAGAGCAGAAAGCGCATCAAGCTGCCGAAACACG 817 consensus_6104#1 TGGGGGAGGGTGGAGTGGTAAAGAAAAAGAGCAGAAAGCGCATCAAGCTGCCGAAACACG 747 consensus_6104#2 ------------------------------------------------------------ consensus_6104#0 TCATCGAGCATCTGAAAGCCGGCAACGGTGGGTGGTGCTGGGGCGTCATAAATGTAAGCA 877 consensus_6104#1 TCATCGAGCATCTGAAAGCCCGCAACGGTGG-TGGTGCTGGGGCGTCATAAATGTAAGCA 806 consensus_6104#2 ------------------------------------------------------------ consensus_6104#0 AAAACTGTAAAATAAAATTCGGCAATTAAAGCTCATTGAAAAAAAAAAAAAAAAAAAAAA 937 consensus_6104#1 AAAACTGTAAAATAAAATTCGGCAATTAAAAATCAAAAACCCCCCCCCCCCCCCCC---- 862 consensus_6104#2 ------------------------------------------------------------ consensus_6104#0 AAAGGCCAAATGTTCC 953 consensus_6104#1 ---------------- consensus_6104#2 ---------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||