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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6107#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1116 fasta sequence
[AGATCGCCCCAGGATTAAATCAATGCAAAACACGCTAAAAAGACGTAAGGGACTATAACCTGTTTCTGAAAACAGTGACAGCACGATAAGGGATAGGGCCAAAGGAAGCNNAAGGCTAAGTGTAAGGAAGCNAATAGAATTAGAACGACGGTATAAGTTCGTTACATGTTTTTGCACCACGAGAGCAATTGTTATTGGCGGGCTATTATATTTCTCTATATATTCTGTGTTACATTAATATTGTTTCGGTATCAATATCTTTGAGCGGGCCGTCACTAATACCTCAATCCCTATTGGGAACAGGTTTGCAACCACCCGGAAAACAGCAAACAAAAAACACCGCGCCTCAACAAACCAACCCAATGGTTATGGAGGGGTAACGGGGTCCTNTCACTTNNAACTTAGGGTACACTGCCACTTCTANGACCACTTTCTACGTAATTNCGGTAGTACATATTGGTACCACACGGAAACACGCACAACAACACTTGGTGNTCCCCTTCTTNANTAANATTCCTTAAACGGTAACCCACGGAAAGGCACTTTCTCACCANNCCTTCTNCTCTGGTACAAGGCCACCTTTAACCCGACACGCCGCANAGCACTANTTTTGNACCCACGGGCCAAACGAAACGCANTTAAGGCCCNCACACACCCGCCCAATCCGGGGCACGAACTTGGCTTAACCACCCCACACTCCGCACCCACTTGCAGCACACACNGGACAACGAAACANCCACACCACACGGCACNCACACAGTAATTGAAAACCCGGCCCCCACCGCGTTAGAACCAATTAATTTANTTCCAAAGCACANCACAANTTTTACACCCNACTATCTTCCCAAACCCCTTACCCGTTCAACTCTCATCACAANCCCCCCGGNACTCCCACAAACCAAACCCTTANCCAAAACCCCACGAACCCCCCAAAACACCAACGNNGCCAAATCTCGCCTCAACCTCTCNACACTTCGCAACCNCCCTCTCCTTACCCCCACACCNTCATCACNCATACCTCACTCACTTTNTTNCCCNCANNCTCCCTCTACACCACCACACACNACNATTACGCNCCGTCTCCCAACNCCACCCCAACTCTTCGTCATCCNCACC]
[+] EMBL AL695883 [AGATCGCCCCAGGATTAAATCAATGCAAAACACGCTAAAAAGACGTAAGGGACTATAACCTGTTTCTGAAAACAGTGACAGCACGATAAGGGATAGGGCCAAAGGAAGCNNAAGGCTAAGTGTAAGGAAGCNAATAGAATTAGAACGACGGTATAAGTTCGTTACATGTTTTTGCACCACGAGAGCAATTGTTATTGGCGGGCTATTATATTTCTCTATATATTCTGTGTTACATTAATATTGTTTCGGTATCAATATCTTTGAGCGGGCCGTCACTAATACCTCAATCCCTATTGGGAACAGGTTTGCAACCACCCGGAAAACAGCAAACAAAAAACACCGCGCCTCAACAAACCAACCCAATGGTTATGGAGGGGTAACGGGGTCCTNTCACTTNNAACTTAGGGTACACTGCCACTTCTANGACCACTTTCTACGTAATTNCGGTAGTACATATTGGTACCACACGGAAACACGCACAACAACACTTGGTGNTCCCCTTCTTNANTAANATTCCTTAAACGGTAACCCACGGAAAGGCACTTTCTCACCANNCCTTCTNCTCTGGTACAAGGCCACCTTTAACCCGACACGCCGCANAGCACTANTTTTGNACCCACGGGCCAAACGAAACGCANTTAAGGCCCNCACACACCCGCCCAATCCGGGGCACGAACTTGGCTTAACCACCCCACACTCCGCACCCACTTGCAGCACACACNGGACAACGAAACANCCACACCACACGGCACNCACACAGTAATTGAAAACCCGGCCCCCACCGCGTTAGAACCAATTAATTTANTTCCAAAGCACANCACAANTTTTACACCCNACTATCTTCCCAAACCCCTTACCCGTTCAACTCTCATCACAANCCCCCCGGNACTCCCACAAACCAAACCCTTANCCAAAACCCCACGAACCCCCCAAAACACCAACGNNGCCAAATCTCGCCTCAACCTCTCNACACTTCGCAACCNCCCTCTCCTTACCCCCACACCNTCATCACNCATACCTCACTCACTTTNTTNCCCNCANNCTCCCTCTACACCACCACACACNACNATTACGCNCCGTCTCCCAACNCCACCCCAACTCTTCGTCATCCNCACC]
consensusID : consensus_6107#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1006 fasta sequence
[CCGGTTTTAAGAGTGAGTCATACTGTGTACAGTCGAGCAGAAGTGTTGGTGGATTTGTTTGATTGCAAAAAGAAAAAGACTACTACGCGTATACTACCGATGTACTATTCATTGCGCGAAATGTTTGTAACAGCAGCTAACACGCACAGCTCTTCTAATTCATCAAACGTGAACGTGCGTGACATGCTGACCTATGTTTACGCAGAGAAGGAAGTAAGGTGCAACAGTAGTGCCTAGCAGCTTCTACATTCAAACGTTGCTAGGGACCATACTATGGTGTGATACANAGTGAATCTGCCTTATACTGGGTANGTGGANGCAAACACAACCAACACAAGAAAACATCACGGAAACAANACCAAAGAAAATGAATAAAATCAGTCTAAATCGTATTACATACTTACTAGNCTGTATGANAAACACACCTCTTCCGTAATAATTATTATTCTTGCGGAAACCTGGTTCTTAAAGGCCCCAAAAGAAATTACTTACACGCACAGGAAGATACTAACAGACAACAGCATTTNANCACACAGTNCAANGTNAACCCNTTCCCAAGTTGGCNGACAAACACAACACCGGCCTAAACCACAGGAACGGTTANCACAGGGGCGACCCTAACTAAACCCCTGGGCTGATTCCCTGGNACACACCCCAGTNGACACAGCACAGCACGACAACNNGGGANACTAACGGGGGACCTCACAAGGGCAAACGCGCCACCAACAGNGGGCCATAAAAGAANAGGCNGGNCACNCAGCGGACAANGNCCNCAACANGACACCTCAAGCAAACCCCGGCACCACGGCCCNTNCACAGCGACNCCCCGGCCACNANCNATGGACACCTCAACGGNCCACCCCNACCGACCNCANACGCCNNCNCCTGCNCCCCACCGCGCNNGGCGNACCAANNCCACAGCAGACACCCCAAACACATCACCGGCGGGCGACNCCAACTCCAACACAATGCGTAACCGCGGGACGCACCACACCCCCNCCCTGCN]
[+] EMBL AL693395 [CCGGTTTTAAGAGTGAGTCATACTGTGTACAGTCGAGCAGAAGTGTTGGTGGATTTGTTTGATTGCAAAAAGAAAAAGACTACTACGCGTATACTACCGATGTACTATTCATTGCGCGAAATGTTTGTAACAGCAGCTAACACGCACAGCTCTTCTAATTCATCAAACGTGAACGTGCGTGACATGCTGACCTATGTTTACGCAGAGAAGGAAGTAAGGTGCAACAGTAGTGCCTAGCAGCTTCTACATTCAAACGTTGCTAGGGACCATACTATGGTGTGATACANAGTGAATCTGCCTTATACTGGGTANGTGGANGCAAACACAACCAACACAAGAAAACATCACGGAAACAANACCAAAGAAAATGAATAAAATCAGTCTAAATCGTATTACATACTTACTAGNCTGTATGANAAACACACCTCTTCCGTAATAATTATTATTCTTGCGGAAACCTGGTTCTTAAAGGCCCCAAAAGAAATTACTTACACGCACAGGAAGATACTAACAGACAACAGCATTTNANCACACAGTNCAANGTNAACCCNTTCCCAAGTTGGCNGACAAACACAACACCGGCCTAAACCACAGGAACGGTTANCACAGGGGCGACCCTAACTAAACCCCTGGGCTGATTCCCTGGNACACACCCCAGTNGACACAGCACAGCACGACAACNNGGGANACTAACGGGGGACCTCACAAGGGCAAACGCGCCACCAACAGNGGGCCATAAAAGAANAGGCNGGNCACNCAGCGGACAANGNCCNCAACANGACACCTCAAGCAAACCCCGGCACCACGGCCCNTNCACAGCGACNCCCCGGCCACNANCNATGGACACCTCAACGGNCCACCCCNACCGACCNCANACGCCNNCNCCTGCNCCCCACCGCGCNNGGCGNACCAANNCCACAGCAGACACCCCAAACACATCACCGGCGGGCGACNCCAACTCCAACACAATGCGTAACCGCGGGACGCACCACACCCCCNCCCTGCN]
consensusID : consensus_6107#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 752 fasta sequence
[TACAGTTTGGCTTATTATAAAAATATCCATTTTGGCTTACCTTAAATAAAANACTGGAAAGATAAATTTTAGTTTGACATACATGTACAACCATCAGAGTGAATCGGTGTATAGGAACAAGAACCATGCAACATGCCACAACACA----ACAGACAGACACCACNACCTCAGTATAATTTCGATTGAACTTTGGCACCGATAGTGTACTAANAGTGAGTCATACTGT-----GTTCGAGCAGAAGTGTTTGGNGGATTTTGTTTGATTGCAAAAAAGAAAAANCTACTACGCGTNATACTACCAATGTNACTATTCATTGCG-CGAAATGTTTGTAACAGCAGCTAACACGCACAGCTCTTCTAATTCATCAAACGTGAACGGCGGAAAGTGAATATGTTTACGCAGAGAAGGAAGTAAGGNGCAACAGTAGGCCTAGCAGCTTCTACATTC-AACGTTGCTAGGGACATACTATGGNGTGATACAAGTGAATCTGCTTATCTGGGTTGTGGAGTAAAAAACAAAAAAAAAAAATCAAGAAACAAACAAGAAATGAATAAATCAGTCTAATCGTTTACTACTTCTAGCTGTTTGAACAACTCTTCCGTATAATATATTCTTGCGAACTGTTTAAGCCAAAAATTATAAGAAGAAGAAAAAAAAGATTACAAATAATTAAAATCAATGCAAAAACACGCTAAAAGACGTAAAGGGACTATAACCTGTTTCTGAAAACAGTGACAGCACGATAAGGGATAGGGCA]
[+] EMBL BX621187 [TACAGTTTGGCTTATTATAAAAATATCCATTTTGGCTTACCTTAAATAAAANACTGGAAAGATAAATTTTAGTTTGACATACATGTACAACCATCAGAGTGAATCGGTGTATAGGAACAAGAACCATGCAACATGCCACAACACA ACAGACAGACACCACNACCTCAGTATAATTTCGATTGAACTTTGGCACCGATAGTGTACTAANAGTGAGTCATACTGT GTTCGAGCAGAAGTGTTTGGNGGATTTTGTTTGATTGCAAAAAAGAAAAANCTACTACGCGTNATACTACCAATGTNACTATTCATTGCGCCGAA ]
[+] EMBL BX621462 [ AGTTTGGCTTATTATAAAAATATCCATTTTGGCTTACCTTAAATAAAAGACTGGAAAGATAAATTTTAGTTTGACATACATGTACAACCATCAGAGTGAATCGGTGTATAGGAACAACAACCATGCAACATGCCACAACACAACAGACAGACAGACACCACAACCTCAGTATAATTTCGATTGAACTTTGGCACCGATAGTGTACTAAGAGTGAGTCATACTGTGTACAGTTCGAGCAGAAGTG TTGGTGGA TTTGTTTGATTGC AAAAAGAAAAAGCTACTACGCGT ATACTACCGATGT ACTATTCATTGCG CGAAATGTTTGTAACAGCAGCTAACACGCACAGCTCTTCTAATTCATCAAACGTGAACGGCGGAAAGTGAATATGTTTACGCAGAGAAGGAAGTAAGGNGCAACAGTAGGCCTAGCAGCTTCTACATTC AACGTTGCTAGGGACATACTATGGNGTGATACAAGTG ]
[+] EMBL BX612718 [ tACTATTCATTGCG CGAAATGTTTGTAACAGCAGCTAACACGCACAGCTCTTCTAATTCATCAAACGTGAACGGCGGAAAGTGAATATGTTTACGCAGAGAAGGAAGTAAGGTGCAACAGTAGGCCTAGCAGCTTCTACATTCAAACGTTGCTAGGGACATACTAAGGTGTGATACAAGTGAATCTGCTTATCTGGGTTGTGGAGTAAAAAACAAAAAAAAAAAATCAAGAAACAAACAAGAAATGAATAAATCAGTCTAATCGTTTACTACTTCTAGCTGTTTGAACAACTCTTCCGTATAATATATTCTTGCGAACTGTTTAAGCCAAAAATTATAAGAAGAAGAAAAAAAAGATTACAAATAATTAAAATCAATGCAAAAACACGCTAAAAGACGTAAAGGGACTATAACCTGTTTCTGAAAACAGTGACAGCACGATAAGGGATAGGGCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6107#1 ------------------------------------------------------------
consensus_6107#2 TACAGTTTGGCTTATTATAAAAATATCCATTTTGGCTTACCTTAAATAAAANACTGGAAA 60
consensus_6107#0 -----------------------------------------------AGATCGCCCCAGG 13
consensus_6107#1 ------------------------------------------------------------
consensus_6107#2 GATAAATTTTAGTTTGACATACATGTACAACCATCAGAGTGAATCGGTGTATAGGAACAA 120
consensus_6107#0 ATTAAATCAATGCAAAACACGC-TAAAAAGACGTAAGGGACTATAACCTGTTTCTGAAAA 72
consensus_6107#1 ------------------------------------------------------------
consensus_6107#2 GAACCATGCAACATGCCACAACACAACAGACAGACACCACNACCTCAGTATAATTTCGAT 180
consensus_6107#0 CAGTGACAGCACGATAAGGGATAGGGCCAAAGGAAGCNNAAGGCTAAGTGTAAGGAAGCN 132
consensus_6107#1 -----------------CCGGTTTTAAGAGTGAGTCATACTGTGTACAGTCGAGCAGAAG 43
consensus_6107#2 TGAACTTTGGCACCGATAGTGTACTAANAGTGAGTCATACTGTGT----TCGAGCAGAAG 236
consensus_6107#0 AATAGAATTAGAACGACGGTATAAGTTCGTTACATGTTTTTGCAC-CACGAGAGCAATTG 191
* * * * ** ***** *
consensus_6107#1 TGTT-GGTGGATTT-GTTTGATTGCAAAAAGAAAAAGACTACTACGCGTA-TACTACCGA 100
consensus_6107#2 TGTTTGGNGGATTTTGTTTGATTGCAAAAAAGAAAAANCTACTACGCGTNATACTACCAA 296
consensus_6107#0 TTATTGGCGGGCT--ATTATATTTCTCTATATATTCTG-TGTTACAT-TAATATTGTTTC 247
* * ** ** * ** *** * * * * *** * ** *
consensus_6107#1 TGTA-CTAT-TCATTGCGCGAAATGTTTGTAA-----CAGCAGCTAACACGCACAGCTCT 153
consensus_6107#2 TGTNACTAT-TCATTGCGCGAAATGTTTGTAA-----CAGCAGCTAACACGCACAGCTCT 350
consensus_6107#0 GGTATCAATATCTTTGAGCGGGCCGTCACTAATACCTCAATCCCTATTGGGAACAGGT-T 306
** * ** ** *** *** ** *** ** *** * **** * *
consensus_6107#1 TCTAATTCATCAAACGTGAACGTGCGTGACATGCTGACCTATGTTTACGCAGAGAAGGAA 213
consensus_6107#2 TCTAATTCATCAAACGTGAACG-GCGGAAAGTGAA----TATGTTTACGCAGAGAAGGAA 405
consensus_6107#0 TGCAACCACCCGGAAAACAGCAAACAAAAAACACCGCGCCTCAACAAACCAACCCAATGG 366
* ** * * * * * * * ** *
consensus_6107#1 GTAAGGTGCAACAGTAGTGCCTAGCAGCTTCTACATTCAAACGTTGCTAGGGACCATACT 273
consensus_6107#2 GTAAGGNGCAACAGTAG-GCCTAGCAGCTTCTACATTCAA-CGTTGCTAGGGAC-ATACT 462
consensus_6107#0 TTATGGAGGGGTAACGGGGTCCTNTCACTTNNA-ACTTAGGGTACACTGCCACTTCTANG 425
** ** * * * * * *** * * * * ** **
consensus_6107#1 ATGGTGTGATACANAGTGAATCTGCCTTATACTGGG--TANGTGGANGCAAACACAACCA 331
consensus_6107#2 ATGGNGTGATACAA-GTGAATCTGC-TTAT-CTGGG--T-TGTGGAGTAAAAAACAAA-- 514
consensus_6107#0 ACCACTTTCTACGTAATTNCGGTAGTACATATTGGTACCACACGGAAACACGCACAACAA 485
* * *** * * ** *** *** * ****
consensus_6107#1 ACACAAGAAAACATCACGGAAACAANACCAAAGAAAATGAATAAAATCAGTCTAAATCGT 391
consensus_6107#2 ----AAAAAAAAATCA-AGAAACAAAC----AAGAAATGAATAAA-TCAGTCTAA-TCGT 563
consensus_6107#0 CACTTGGTGNTCCCCTTCTTNANTAANATTCCTTAAACGGT--AACCCACGGAAAGGCAC 543
* * * *** * ** ** ** *
consensus_6107#1 ATTACATACTTACTAGNCTGTATGANAAACACACCTCTTCCGTAATAATTATTATTCTTG 451
consensus_6107#2 -TTAC-TACTT-CTAGC-TGTTTGAACAAC-----TCTTCCGTA-TAATA--TATTCTTG 611
consensus_6107#0 -TTTCTCACCANNCCTTCTNCTCTGGTACAAGGCCACCTTTAACCCGACACGCCGCANAG 602
** * ** * * * * * *
consensus_6107#1 CGGAAACCTGGTTCTTAAAGGCCCCAAAAGAAATTACTTACACGCACAGGAA---GAT-- 506
consensus_6107#2 CGAACTGTTTAAGCCAAAAATTATAAGAAGAAGAAAAAAAAGATTACAAATA---ATTAA 668
consensus_6107#0 CACTANTTTTGNACCCACGGGCCAAACGAAACGCANTTAAGGCCCNCACACACCCGCCCA 662
* * * * * * * * ** *
consensus_6107#1 -ACTAACAGACAACAGCA-TTTNANCACACAGTNCAANGTNAACCCNTTCCCAAGTTGGC 564
consensus_6107#2 AATCAATGCAAAAACACG-CTAAAAGACGTAAAGGGACTATAACCTGTTTCTGAAAACAG 727
consensus_6107#0 ATCCGGGGCACGAACTTGGCTTAACCACCCCACACT-CCGCACCCACTTGCAGCACACAC 721
* * * * ** * ** ** *
consensus_6107#1 NGACAAACACAACACCGGCC---TAAACCACAGGAACGGTTANCACAGGGGCGACCCTAA 621
consensus_6107#2 TGACAG-CACGATAAGGGA----TAGGGCA------------------------------ 752
consensus_6107#0 NGGACAACGAAACANCCACACCACACGGCACNCACACAGTAATTGAAAACCCGGCCCCCA 781
* * * * * **
consensus_6107#1 CTAAACCCCTGGGCTGATTCCCTGGNACACACCCCAGTNGACACAGCACAGCACGACAAC 681
consensus_6107#2 ------------------------------------------------------------
consensus_6107#0 CCGCGTTAGAACCAATTAATTTANTTCCAAAGCACANCACAANTTTTACACCCNACTATC 841
consensus_6107#1 NNGGGANACTAACGGGGGACCTCACAAGGGCAAACGCGCCACCAACAGNGGGCCATAAAA 741
consensus_6107#2 ------------------------------------------------------------
consensus_6107#0 TTCCCAAAC---CCCTTACCCGTTCAACTCTCATCACAANCCCCCCGGNACTCCCACAAA 898
consensus_6107#1 GAANAGGCNGGNCACNCAGCGGACAANGNCCNCAACANGACACCTCAAGCAAACCCCGGC 801
consensus_6107#2 ------------------------------------------------------------
consensus_6107#0 CCAAACCCTTANCCAAAACCCCACGAACCCCCCAAAACACCAACGNNGCCAAATCTCGCC 958
consensus_6107#1 ACCACGGCCCNTNCACAGCGACNCCCCGGCCACNANCNATGGACACCTCAACGGNCCACC 861
consensus_6107#2 ------------------------------------------------------------
consensus_6107#0 TCAACC-TCTCNACACTTCGCAACCNCCCTCTCCTTACCCCCACACCNTCATCACNCATA 1017
consensus_6107#1 CCNACCGACCNCANACGCCNNCNCCTGCNCCCCACCGCGCNNGGCGNACCAANNCCACAG 921
consensus_6107#2 ------------------------------------------------------------
consensus_6107#0 CCTCACTCACTTTNTTNCCCNCANNCTCCCTCTACACCACCACACACNACNATTACGCNC 1077
consensus_6107#1 CAGACACCCCAAACACATCACCGGCGGGCGACNCCAACTCCAACACAATGCGTAACCGCG 981
consensus_6107#2 ------------------------------------------------------------
consensus_6107#0 CGTCTCCCAACNCCACCCCAACTCTTCGTCATCCNCACC--------------------- 1116
consensus_6107#1 GGACGCACCACACCCCCNCCCTGCN 1006
consensus_6107#2 -------------------------
consensus_6107#0 -------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||