These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6112#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 842 fasta sequence [ACCATGCTCGAGCAGAATCCCCACGAGTTAAAGTAGGATTTTTTAGTGTCATAATCTGCGAGCTGTAATTGTAAAACGTTGTNTTTAATGTAGTAACCATGATCTCGAACGCTTTGTGCGATCTGGAGAAATGTGTGTACACGGCCGGAGTCCAGCTCGATTCACTGGCCGTGAAACTGACGGATGTGGAGCGCAATCTGGACGAAAACGAGCTAGAATCGATCGAAAATGAGTCAGTGATGGAGTTAGCTGGAGTCCGTGACGGAGGTCAAGAACGAGTACNCAGAACCTGCGCAAAGATTTGCAGGAGGTGCAGCAGCTGCAGAAGGAAATGACCAACTCACTGCGCTACCAGGTTGCGAAACATGACAGCAAACGTTCCGGGGGCTGAACGAACGAAAATAGGAATCCAACTACCATACCGGTGACACCTATGTGCCGCCACCAGGNCGGCTCGTCCTTNCCGCAAATGCCAGGGCACGAANGCGGCGGTTGACACCCCAACAAATCCANCCCCGGCACCCGGCACGCAAGTATTGACTNGGNCCCCAAAACCAAGAACCCCTTATAACCACAGGGTGGACACANTNGCATTCCCAATGGGAACCCAGGANAGCNCGTTTGCCCNTGCGGTCNNAACTTGGCTTCGCACAAGGACGCTGGCGNNCNTCCTATNGCCCGNAAAGAACGACGAAGAAGAANCATTCCGGTCCGTACTAACCTAACTCACTTCGTTAAGCGTGCGACAACACCGCACGCCTCAGTTGCCCGGGAACCCTTTGAGGTTGNTACACACNTATGGGAACAAATATGACACCCCTGGGANACTGGCTTCATGGAAC] [+] EMBL AL696373 [ACCATGCTCGAGCAGAATCCCCACGAGTTAAAGTAGGATTTTTTAGTGTCATAATCTGCGAGCTGTAATTGTAAAACGTTGTNTTTAATGTAGTAACCATGATCTCGAACGCTTTGTGCGATCTGGAGAAATGTGTGTACACGGCCGGAGTCCAGCTCGATTCACTGGCCGTGAAACTGACGGATGTGGAGCGCAATCTGGACGAAAACGAGCTAGAATCGATCGAAAATGAGTCAGTGATGGAGTTAGCTGGAGTCCGTGACGGAGGTCAAGAACGAGTACNCAGAACCTGCGCAAAGATTTGCAGGAGGTGCAGCAGCTGCAGAAGGAAATGACCAACTCACTGCGCTACCAGGTTGCGAAACATGACAGCAAACGTTCCGGGGGCTGAACGAACGAAAATAGGAATCCAACTACCATACCGGTGACACCTATGTGCCGCCACCAGGNCGGCTCGTCCTTNCCGCAAATGCCAGGGCACGAANGCGGCGGTTGACACCCCAACAAATCCANCCCCGGCACCCGGCACGCAAGTATTGACTNGGNCCCCAAAACCAAGAACCCCTTATAACCACAGGGTGGACACANTNGCATTCCCAATGGGAACCCAGGANAGCNCGTTTGCCCNTGCGGTCNNAACTTGGCTTCGCACAAGGACGCTGGCGNNCNTCCTATNGCCCGNAAAGAACGACGAAGAAGAANCATTCCGGTCCGTACTAACCTAACTCACTTCGTTAAGCGTGCGACAACACCGCACGCCTCAGTTGCCCGGGAACCCTTTGAGGTTGNTACACACNTATGGGAACAAATATGACACCCCTGGGANACTGGCTTCATGGAAC] consensusID : consensus_6112#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 789 fasta sequence [GTGCGCTATTAAAGTAGGAATTTTTAGTGTGATAATCTGCGAGTGGAATTGTAAAACGTTGTTTTTAATGTAGTAACCATGATCTCGAACGCTTTGTGCGATCTGGAGAAATGTGTGTACACGGCCGGAGTCCAGCTCGATTCACTGGCCGTGAAACTGACGGATGTGGAGCGCAATCTGGACGAAAACGAGCTAGAATCGATCGAAAATGAGTCAGTGATGGAGTTGCTCGAGTCCGTGACGGAGGTCAAGAACGAGTACCAGAACCTGCGCAAAGATTTGCAGGAGGTGCAGCAGCTGCAGAAGGAAATGACCAACTCGCTGCGCTACCAGTTGCGAAACATGACGCAAACGTTCCGGGGGCTGAAGAAGAAAATTGAATCCAACTCCATACCGGTGCACCTTGTGCCGCCACCGGCCGGCTCGTCTTCCCGCAATGCAGGGCAC-GAAGCGCGTGACACCCAACATCACCCGCACCCGCCGCATCTGCTGCCCCAACCAGACCTTACCGTGCACGATCACGGACCGAGGCGTGCCGCGGGCATGCTGAAGAGTGGCAAACGCACGCTCGTGCGGACCTTGCGTGCACTCTATGGACAATTTGTACCTGACTTGGTTTGGACCGTATTTTACCTAACACATTGGAGAACGTTGCACGTTAACTACTGCAAACTGTAGCAGGAATCGGANGGGGAGGGGGGACATCCTTGAATATTACCCAACGGGGGAAGGAATTGATCAGAGGAAGCAAATTCATACTCAAGCATGCACAGCACGAAGATACGCTGC] [+] EMBL BX622808 [GTGCGCTATTAAAGTAGGAATTTTTAGTGTGATAATCTGCGAGTGGAATTGTAAAACGTTGTTTTTAATGTAGTAACCATGATCTCGAACGCTTTGTGCGATCTGGAGAAATGTGTGTACACGGCCGGAGTCCAGCTCGATTCACTGGCCGTGAAACTGACGGATGTGGAGCGCAATCTGGACGAAAACGAGCTAGAATCGATCGAAAATGAGTCAGTGATGGAGTTGCTCGAGTCCGTGACGGAGGTCAAGAACGAGTACCAGAACCTGCGCAAAGATTTGCAGGAGGTGCAGCAGCTGCAGAAGGAAATGACCAACTCGCTGCGCTACCAGTTGCGAAACATGACGCAAACGTTCCGGGGGCTGAAGAAGAAAATTGAATCCAACTCCATACCGGTGCACCTTGTGCCGCCACCGGCCGGCTCGTCTTCCCGCAATGCAGGGCAC GAAGCGCGTGACTCCCAACATCACCCGCACCCGCCGCATCTGCTGCCCCAACCAGACCTTACCGTGCACGATCACGGACCGAGGCGTGCCGCGGGCATGCTGAAGAGTGGCAAACGCACGCTCGTGCGGACCTTGCGTGCACTCTATGGACAATTTGTACCTGACTTGGTTTGGACCGTATTTTACCTAACACATTGGAGAACGTTGCACGTTAACTACTGCAAACTGTAGCAGGAATCGGANGGGGAGGGGGGACATCCTTGAATATTACCCAACGGGGGAAGGAATTGATCAGAGGAAGCAAATTCATACTCAAGCATGCACAGCACGAAGATACGCTGC] [+] EMBL BX623813 [ TCTGCGAGTGGAATTGTAAAACGTTGTTTTTAATGTAGTAACCATGATCTCGAACGCTTTGTGCGATCTGGAGAAATGTGTGTACACGGCCGGAGTCCAGCTCGATTCACTGGCCGTGAAACTGACGGATGTGGAGCGCAATCTGGACGAAAACGAGCTAGAATCGATCGAAAATGAGTCAGTGATGGAGTTGCTGGAGTCCGTGACGGAGGTCAAGAACGAGTACCANAACCTGCGCAAAGATTTGCAGGAGGTGCAGCAGCTGCAGAAGGAAATGACCAACTCACTGCGCTACCAGTTGCGAAACATGACGCAAACGTTCCGGGGGCTGAAGAAGAAAATTGAATCCAACTCCATACCGGTGCACCTTGTGCCGCCACCGGCCGGCTCGTCTTCCCGCAATGCAGGGCAC GAAGCGCGTGACACCCAACATCACCCGCACCCGCCGCATCTGCTGCCCCAACCAGACCTTACCGTGCACGATCACGGACCGAG ] [+] EMBL BX623676 [ TTGTGCCNCCACCGGTCGGCTCTTCTTCCCGCAATGCAGGGCACTGAAGCGCGTGACACCCAACATCACCCGCACCCGNCGNATCTGCTGCCCCAACCAGACCTTACC ] consensusID : consensus_6112#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 500 fasta sequence [TATTTGGGANAAAGTTTNGGTNAGGAATNAGCTTAGTGCGCTATTTAAGGTAAAGGNGCNAAAAACCCTTTTTTTACTCTAGTAGTAGATAATCTGNGAGTGGAATTGTAACAACGTNNGTTTTTAATGTAGTAACCATGATCTCGAACGCTCTTGTAGCGATCTGGAGAAATGTGTGTACACGGCCGGAGTCCAGCTCGATTCACTGGCCGTGAAACTGACGGGATGTGGAGCGCAATCTGGACGAAAACGAGCTAAAATCGATCGAAAATGAGTCAGTGATGGAGTTGCTTGGAGTCCGTGACGGAGGTCAAGAACGAGTACCAGAACTGCGCAAAGATTTGCAGGAGGTGCAGCAGCTGCAGAAGGACAATGACCAAACTTCCACTGGGCNCGGCTACCAGTTGCGACATACATGACGCAAACCGTTCCGGTGAGGCTGAAGGAAGAAAATTGAATCCAAACTACCATACCGGTGGCACCTTGTGCCGCGCACCGGC] [+] EMBL AL930964 [TATTTGGGANAAAGTTTNGGTNAGGAATNAGCTTAGTGCGCTATTTAAGGTAAAGGNGCNAAAAACCCTTTTTTTACTCTAGTAGTAGATAATCTGNGAGTGGAATTGTAACAACGTNNGTTTTTAATGTAGTAACCATGATCTCGAACGCTCTTGTAGCGATCTGGAGAAATGTGTGTACACGGCCGGAGTCCAGCTCGATTCACTGGCCGTGAAACTGACGGGATGTGGAGCGCAATCTGGACGAAAACGAGCTAAAATCGATCGAAAATGAGTCAGTGATGGAGTTGCTTGGAGTCCGTGACGGAGGTCAAGAACGAGTACCAGAACTGCGCAAAGATTTGCAGGAGGTGCAGCAGCTGCAGAAGGACAATGACCAAACTTCCACTGGGCNCGGCTACCAGTTGCGACATACATGACGCAAACCGTTCCGGTGAGGCTGAAGGAAGAAAATTGAATCCAAACTACCATACCGGTGGCACCTTGTGCCGCGCACCGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6112#1 -----------------------------------GTGCGCTATT----------AAAGT 15 consensus_6112#2 TATTTGGGANAAAGTTTNGGTNAGGAATNAGCTTAGTGCGCTATTTA---AGGTAAAGGN 57 consensus_6112#0 --------------------------ACCATGCTCGAGCAGAATCCCCACGAGTTAAAGT 34 * ** ** ** * consensus_6112#1 AGGAA--------TTTTTAGTGT-------GATAATCTGCGAG-TGGAATTGTAA-AACG 58 consensus_6112#2 GCNAAAAACCCTTTTTTTACTCTAGTAGTAGATAATCTGNGAG-TGGAATTGTAACAACG 116 consensus_6112#0 AGGAT--------TTTTTAGTGT-------CATAATCTGCGAGCTGTAATTGTAA-AACG 78 * ****** * * ******** *** ** ******** **** consensus_6112#1 TTG-TTTTTAATGTAGTAACCATGATCTCGAACGCT-TTGT-GCGATCTGGAGAAATGTG 115 consensus_6112#2 TNNGTTTTTAATGTAGTAACCATGATCTCGAACGCTCTTGTAGCGATCTGGAGAAATGTG 176 consensus_6112#0 TTG-TNTTTAATGTAGTAACCATGATCTCGAACGCT-TTGT-GCGATCTGGAGAAATGTG 135 * * ****************************** **** ****************** consensus_6112#1 TGTACACGGCCGGAGTCCAGCTCGATTCACTGGCCGTGAAACTGACGG-ATGTGGAGCGC 174 consensus_6112#2 TGTACACGGCCGGAGTCCAGCTCGATTCACTGGCCGTGAAACTGACGGGATGTGGAGCGC 236 consensus_6112#0 TGTACACGGCCGGAGTCCAGCTCGATTCACTGGCCGTGAAACTGACGG-ATGTGGAGCGC 194 ************************************************ *********** consensus_6112#1 AATCTGGACGAAAACGAGCTAGAATCGATCGAAAATGAGTCAGTGATGGAGTTGCTCG-A 233 consensus_6112#2 AATCTGGACGAAAACGAGCTAAAATCGATCGAAAATGAGTCAGTGATGGAGTTGCTTGGA 296 consensus_6112#0 AATCTGGACGAAAACGAGCTAGAATCGATCGAAAATGAGTCAGTGATGGAGTTAGCTGGA 254 ********************* ******************************* * * consensus_6112#1 GTCCGTGACGGAGGTCAAGAACGAGTACC-AGAACCTGCGCAAAGATTTGCAGGAGGTGC 292 consensus_6112#2 GTCCGTGACGGAGGTCAAGAACGAGTACC-AGAAC-TGCGCAAAGATTTGCAGGAGGTGC 354 consensus_6112#0 GTCCGTGACGGAGGTCAAGAACGAGTACNCAGAACCTGCGCAAAGATTTGCAGGAGGTGC 314 **************************** ***** ************************ consensus_6112#1 AGCAGCTGCAGAAGGA-AATGACCAACTCGCTGC--------GCTACCAG-TTGCGAA-- 340 consensus_6112#2 AGCAGCTGCAGAAGGACAATGACCAAACTTCCACTGGGCNCGGCTACCAG-TTGCGACAT 413 consensus_6112#0 AGCAGCTGCAGAAGGA-AATGACCAACTCACTGC--------GCTACCAGGTTGCGAA-- 363 **************** ********* * * ******** ****** consensus_6112#1 ACATGAC-GCAAAC-GTTCCG--GGGGCTGAAG-AAGAAAATT--GAATCCAACT--CCA 391 consensus_6112#2 ACATGAC-GCAAACCGTTCCGGTGAGGCTGAAGGAAGAAAATT--GAATCCAAACTACCA 470 consensus_6112#0 ACATGACAGCAAAC-GTTCCG--GGGGCTGAACGAACGAAAATAGGAATCCAACT-ACCA 419 ******* ****** ****** * ******* ** *** * ******** *** consensus_6112#1 TACCGGTG-CACCT-TGTGCCGC-CACCGGCCGGCTCGTC-TTCCCGCAATG--CAGGGC 445 consensus_6112#2 TACCGGTGGCACCT-TGTGCCGCGCACCGGC----------------------------- 500 consensus_6112#0 TACCGGTGACACCTATGTGCCGCCACCAGGNCGGCTCGTCCTTNCCGCAAATGCCAGGGC 479 ******** ***** ******** * ** consensus_6112#1 ACGAAGCGCGTGAC--ACCCAACATCACCCGCACCCGCCGCATCTGCTGCCCCAACCAGA 503 consensus_6112#2 ------------------------------------------------------------ consensus_6112#0 ACGAANGCGGCGGTTGACACCCCAACAAATCCANCCCCGGCACCCGGCACGCAAGTATTG 539 consensus_6112#1 CCTTACCGTGCACGATCACGGACCG-----AGGCGTGCCGCGGGCATGCTGAAGAGTGGC 558 consensus_6112#2 ------------------------------------------------------------ consensus_6112#0 ACTNGGNCCCCAAAACCAAGAACCCCTTATAACCACAGGGTGGACACANTNGC-ATTCCC 598 consensus_6112#1 AAACGCACGCTCGTGCGGACCTTGCGTGCACTCTATGGACAATTTGTACCTGACTTGGTT 618 consensus_6112#2 ------------------------------------------------------------ consensus_6112#0 AATGGGAACCCAGGANAGCNCGTTTGCCCNTGCGGTCNNAACTTGGCTTCGCACAAGGAC 658 consensus_6112#1 TGGACCGTATTTTACCTAACACATTGGAGAACGTTGCACGTTAACTACTGCAAACTGTAG 678 consensus_6112#2 ------------------------------------------------------------ consensus_6112#0 GCTGGCGNNCNTCCTATNGCCCGN-AAAGAACGACGAAGAAGAANCATTCCGGTCCGTAC 717 consensus_6112#1 CAGG--AATCGGANGGGGAGGGGGGACATCCTTGAATATTACCCAACGGGGGAAGGAATT 736 consensus_6112#2 ------------------------------------------------------------ consensus_6112#0 TAACCTAACTCACTTCGTTAAGCGTGCGACAACACCGCACGCCTCAGTTGCCCGGGAACC 777 consensus_6112#1 GATCAGAGGAAGCAAATTCATACTCAAGCATGCACAGCAC-----GAAGATACGCTGC-- 789 consensus_6112#2 ------------------------------------------------------------ consensus_6112#0 CTTTGAGGTTGNTACACACNTATGGGAACAAATATGACACCCCTGGGANACTGGCTTCAT 837 consensus_6112#1 ----- consensus_6112#2 ----- consensus_6112#0 GGAAC 842 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||