These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6124#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1007 fasta sequence [CCGGGTGCTGGTGCGAAGAGACGCCTGACTGGCCGGGCTAAAAATAATGCCCCACATGCTCGTGATTGCACGCGTGCCGGGTGATTCTTTCACTAGTGACCATGCGGACGTCATTGTCCCTCTAGAGCACAGTTGACGCCCACTGGCGCACGCTATTTACGTACGGTCGACGCGCCTATGTACGCAGCAGCTGGCTGCGCCACCAGTACGGGGGTACGTACAATTACACTCATTGCATGGGGTAGCAGCATGATGTTCGAAGGGGGTTGACTCGAAAGTAACATACATACCATTTCAATGCGCACCGCGACCATTACCCAGTGCAGTGCGCGAGCGAGAAACCAGTGGTCCTCCGTCAGTGGTTTCAGCGCGGTCGACCGTGTTCGCGTGTGTGCTCCGGGCCAGCAGCAGTGTAACGCACATCTGACAGTTTCGCGCAGCGGTGGAGACGCAGCACCCGGACACCCAACCCCAAGCGTGTTGCGCTCGCTGGTGAAGGAAGCATCTTCTTTGCAAATATAAATATTTGCCCGACTGCCTTCAAATTGTAACGCGTGTTT-T----TTTTGTTTTGTGTGCTTCTCCATGTGTGTGACTGTTTGCTAGTGAGTAGTTGCCGTGTTAGAAGCATCCAGGAAGGAAGTGTGCACGGGCCTAACTTCTAACT--A---A--GCCCTCCCCCTGTCGGGTGGATGAGT-GGTGAAGTGGTTCGGTGAATGTTCGTCCGAGAAGGTGA--AGGTGTGAATTTATCCGTTCTGTGCTTGCTGTGGAAAGCAAAGAAAGGTGTTGAGTTTAGTGCGCACTGGAACGCATTTCTGGAAGATCCTGCCACTACTAGGCAACGCTTCCACGGCTCAAGGTTTTACAGCACGGGCCGATCATAGTGTTCACAGTGTGTTCGCGAGTCGGCGTACATTGCCGATTCGGCACGGGAAGAAGTGTTTGTATAACGCGAACGCGTACCACCTTAGAACCGAAGGTGTCCGAAGTTGCCGGTGATAGTGGTACCGCAA] [+] EMBL BM618947 [CCGGGTGCTGGTGCGAAGAGACGCCTGACTGGCCGGGCTAAAAATAATGCCCCACATGCTCGTGATTGCACGCGTGCCGGGTGATTCTTTCACTAGTGACCATGCGGACGTCATTGTCCCTCTAGAGCACAGTTGACGCCCACTGGCGCACGCTATTTACGTACGGTCGACGCGCCTATGTACGCAGCAGCTGGCTGCGCCACCAGTACGGGGGTACGTACAATTACACTCATTGCATGGGGTAGCAGCATGATGTTCGAAGGGGGTTGACTCGAAAGTAACATACATACCATTTCAATGCGCACCGCGACCATTACCCAGTGCAGTGCGCGAGCGAGAAACCAGTGGTCCTCCGTCAGTGGTTTCAGCGCGGTCGACCGTGTTCGCGTGTGTGCTCCGGGCCAGCAGCAGTGTAACGCACATCTGACAGTTTCGCGCAGCGGTGGAGACGCAGCACCCGGACACCCAACCCCAAGCGTGTTGCGCTCGCTGGTGAAGGAAGCATCTTCTTTGCAAATATAAATATTTGCCCGGCTGCCTTCAAATTGTAACGCGTGTTT TTTTGTTTTGTTTTGTGTGCTTCTCCATGTGTGTGACTGTTTGCTAGTGAGTAGTTGCCGTGTTAGAAGCATCCAGGAAGGAAGTGTGCACGGGCCTAACTTCTAACT ] [+] EMBL BM590463 [ ccgAACCAGTGGTCCTCCGTCAGTGGTTTCAGCACGGTCGACCGTGTTCGCGTGTGTGCTCCGGGCCAGCAGCAGTGTAACGCACATCTGACAGTTTCGCGTAGCGGTGGAGACGCAGCACCCGGACACCCGACCCCAAGCGTGTTGCGCTCGCTGGTGAAGGAAGCATCTTCTTTGCAAATATAAATATTTGCCCGACTGCCTTCAAATTGTAACGCGTGTTTCT TTTTGTTTTGTGTGCTTCTCCATGTGTGTGACTGTTTGCTAGTGAGTAGTTGCCGTGTTAGAAGCATCCAGGAAGGAAGTGTGCACGGGCCTAACTTCTAACT A A GCCCGCTCCCTGTGTGGTGGATGAGT GGTGAAGTGGTTCGGTGAATGTTCGTCCGAGAAGGTGAGTCCGTGTGAATTTATCCGTTCTGTGCTTGCTGTGGAAAGCAAAGAAAGGTGTTGAGTTTAGTGCGCACTGGAACGCATTTCTGGAAGATCCTGCCACTACTAGGCAACGCTTCCACGGCACAAGGTTTTACAGCACGGGCCGATCATAGTGTTCACAGTGTGTTCGCGAGGCGGCGTACATTGC ] [+] EMBL BM590941 [ ccgGGTTTCAGCGCGGTCGACCGTGTTCGCGTGTGTGCTCCGGGCCAGCAGCAGTGTAACGCACATCTGACAGTTTCGCGCAGCGGTGGAGGCGCAGCACCCGGACACCCAACCCCAAGCGTGTTGCGCTCGCTGGTGAAGGAAGCATCTTCTTTGCAAATATAAATATTTGCCCGACTGCCTTCAAATTGTAACGCGTG TT T TTTTGTTTTGTGTGCTGCTCCATGTGTGTGACTGTTTGCTAGTGAGTAGTTGCCGTGTTAGAAGCATCCAGGAAGGAAGTGTGCACGGGCCTAACTTCTAACTCGACTCACGGCCCTCCCCCTGTCGGGTGGATGAGT GGTGAAGTGG TCGGTGAATGTTCGTCCGAGAAGGTGA AGGTGTGAATTTATCCGTTCTGTGCTTGCTGTGGAAAGCAAAGAAAGGTGTTGAGTTTAGTGCGCACTGGAACGCATTTCTGGAAGATCCTGCCACTACTAGGCAACGCTTCCACGGCTCAAGGTTTTACAGCACGGGCCGATCATAGTGTTCACAGTGTGTTCGCGAGTCGGCGTACATTGCCGATTCGGCACGGGAAGAAGTGTTTGTATAACGCGAACGCGTACCACCTTAGAACCGAAGGTGTCCGAAGTTGCCGGT ] [+] EMBL BM617319 [ ccgGCGCGGTCGACCGTGTTCGCGTGTGTGCTCCGGGCCAGCAGCAGTTTAACGCACATCTGACAGTTTCGCGCAGCGGTGGAGGCGCAGCACCCGGACACCCAACCCCAAGCGTGTTGCGCTCGCTGGTGAAGGAAGCATCTTCTTTGCAAATATAAATATTTGCCCGACTGCCTTCAAATTGTAACGCGTG TT T TTTTGTTTTGTGTGCTGCTCCATGTGTGTGACTGTTTGCTAGTGAGTAGTTGCCGTGTTAGAAGCATCCAGGAAGGAAGTGTGCACGGGCCTAACTTCTAACTCGACTCACGGCCCTCCCCCTGTCGGGTGGATGAGTGGGTGAAGTGGTTCGGTGAATGTTCGTCCGAGAAGGTGA AGGTGTGAATTTATCCGTTCTGTGCTTGCTGTGGAAAGCAAAGAAAGGTGTTGAGTTTAGTGCGCACTGGAACGCATTTCTGGAAGATCCTGCCACTACTAGGCAACGCTTCCACGGCTCAAGGTTTTACAGCACGGGCCGATCATAGTGTTCACAGTGTGTTCGCGAGTCGGCGTACATTGCCGATTCGGCACGGGAAGAAGTGTTTGTATAACGCGAACGCGTACCACCTTAAAACCGAAGGTGTCCGAAGTTGCCGTTGATAGTGGTACCGCAA] consensusID : consensus_6124#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 579 fasta sequence [CCGCCCACGCGTCCGCGAGAAACCAGTGGTCCTCCGTCAGTGGTTTCAGCGCGGTCGACCGTGTTCGCGTGTGTGCTCCGGGCCAGCAGCAGTGTAACGCACATCTGACAGTTTCGCGCAGCGGTGGAGACGCAGCACCCGGACACCCAACCCCAAGCGTGTTGCGCTCGCTGGTGAAGGAAGCATCTTCTTTGCAAATATAAATATTTGCCCGGCTGCCTTCAAATTGTAACGCGTGTTTTTTTGTTTTGTTTTGTGTGCTTCTCCATGTGTGTGACTGTTTGCTAGTGAGTAGTTGCCGTGTTAGAAGCATCCAGGAAGGAAGTGTGCACGGGCCTAACTTCTAACTCGACTCACGGCCCTCCCTCTGTGTGGTGGAGAAGTGGGTGAAATTGGTTCGGTGAATGTTCGTCCGATAAGGTGAGGGTGTGAATTTATCCGTTCTGTGCTTGCTGTGGAAAGAAAAGAAAGGTGTTGAGTTTAGTGCGCACTGGAACGCATTTTCTGGGAAGATCCTGCCACTACTAGGCAACGCTTCCACGGCTCAAGGTTTTACAGCACGGGCCGATCATAGTGGTT] [+] EMBL BM619920 [CCGCCCACGCGTCCGCGAGAAACCAGTGGTCCTCCGTCAGTGGTTTCAGCGCGGTCGACCGTGTTCGCGTGTGTGCTCCGGGCCAGCAGCAGTGTAACGCACATCTGACAGTTTCGCGCAGCGGTGGAGACGCAGCACCCGGACACCCAACCCCAAGCGTGTTGCGCTCGCTGGTGAAGGAAGCATCTTCTTTGCAAATATAAATATTTGCCCGGCTGCCTTCAAATTGTAACGCGTGTTTTTTTGTTTTGTTTTGTGTGCTTCTCCATGTGTGTGACTGTTTGCTAGTGAGTAGTTGCCGTGTTAGAAGCATCCAGGAAGGAAGTGTGCACGGGCCTAACTTCTAACTCGACTCACGGCCCTCCCTCTGTGTGGTGGAGAAGTGGGTGAAATTGGTTCGGTGAATGTTCGTCCGATAAGGTGAGGGTGTGAATTTATCCGTTCTGTGCTTGCTGTGGAAAGAAAAGAAAGGTGTTGAGTTTAGTGCGCACTGGAACGCATTTTCTGGGAAGATCCTGCCACTACTAGGCAACGCTTCCACGGCTCAAGGTTTTACAGCACGGGCCGATCATAGTGGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6124#0 CCGGGTGCTGGTGCGAAGAGACGCCTGACTGGCCGGGCTAAAAATAATGCCCCACATGCT 60 consensus_6124#1 ------------------------------------------------------------ consensus_6124#0 CGTGATTGCACGCGTGCCGGGTGATTCTTTCACTAGTGACCATGCGGACGTCATTGTCCC 120 consensus_6124#1 ------------------------------------------------------------ consensus_6124#0 TCTAGAGCACAGTTGACGCCCACTGGCGCACGCTATTTACGTACGGTCGACGCGCCTATG 180 consensus_6124#1 ------------------------------------------------------------ consensus_6124#0 TACGCAGCAGCTGGCTGCGCCACCAGTACGGGGGTACGTACAATTACACTCATTGCATGG 240 consensus_6124#1 ------------------------------------------------------------ consensus_6124#0 GGTAGCAGCATGATGTTCGAAGGGGGTTGACTCGAAAGTAACATACATACCATTTCAATG 300 consensus_6124#1 ------------------------------------------------------------ consensus_6124#0 CGCACCGCGACCATTACCCAGTGCAGTGCGCGAGCGAGAAACCAGTGGTCCTCCGTCAGT 360 consensus_6124#1 ------------------CCGCCCA-CGCGTCCGCGAGAAACCAGTGGTCCTCCGTCAGT 41 * * ** *** *************************** consensus_6124#0 GGTTTCAGCGCGGTCGACCGTGTTCGCGTGTGTGCTCCGGGCCAGCAGCAGTGTAACGCA 420 consensus_6124#1 GGTTTCAGCGCGGTCGACCGTGTTCGCGTGTGTGCTCCGGGCCAGCAGCAGTGTAACGCA 101 ************************************************************ consensus_6124#0 CATCTGACAGTTTCGCGCAGCGGTGGAGACGCAGCACCCGGACACCCAACCCCAAGCGTG 480 consensus_6124#1 CATCTGACAGTTTCGCGCAGCGGTGGAGACGCAGCACCCGGACACCCAACCCCAAGCGTG 161 ************************************************************ consensus_6124#0 TTGCGCTCGCTGGTGAAGGAAGCATCTTCTTTGCAAATATAAATATTTGCCCGACTGCCT 540 consensus_6124#1 TTGCGCTCGCTGGTGAAGGAAGCATCTTCTTTGCAAATATAAATATTTGCCCGGCTGCCT 221 ***************************************************** ****** consensus_6124#0 TCAAATTGTAACGCGTGTTTTTTT----TGTTTTGTGTGCTTCTCCATGTGTGTGACTGT 596 consensus_6124#1 TCAAATTGTAACGCGTGTTTTTTTGTTTTGTTTTGTGTGCTTCTCCATGTGTGTGACTGT 281 ************************ ******************************** consensus_6124#0 TTGCTAGTGAGTAGTTGCCGTGTTAGAAGCATCCAGGAAGGAAGTGTGCACGGGCCTAAC 656 consensus_6124#1 TTGCTAGTGAGTAGTTGCCGTGTTAGAAGCATCCAGGAAGGAAGTGTGCACGGGCCTAAC 341 ************************************************************ consensus_6124#0 TTCTAACTAA-------GCCCTCCCCCTGTCGGGTGGATGAGTGG-TGAAGT-GGTTCGG 707 consensus_6124#1 TTCTAACTCGACTCACGGCCCTCCCTCTGTGTGGTGGAGAAGTGGGTGAAATTGGTTCGG 401 ******** ******** **** ****** ***** **** * ******* consensus_6124#0 TGAATGTTCGTCCGAGAAGGTGAAGGTGTGAATTTATCCGTTCTGTGCTTGCTGTGGAAA 767 consensus_6124#1 TGAATGTTCGTCCGATAAGGTGAGGGTGTGAATTTATCCGTTCTGTGCTTGCTGTGGAAA 461 *************** ******* ************************************ consensus_6124#0 GCAAAGAAAGGTGTTGAGTTTAGTGCGCACTGGAACGCATTTCT--GGAAGATCCTGCCA 825 consensus_6124#1 GAAAAGAAAGGTGTTGAGTTTAGTGCGCACTGGAACGCATTTTCTGGGAAGATCCTGCCA 521 * **************************************** ************** consensus_6124#0 CTACTAGGCAACGCTTCCACGGCTCAAGGTTTTACAGCACGGGCCGATCATAGTGTTCAC 885 consensus_6124#1 CTACTAGGCAACGCTTCCACGGCTCAAGGTTTTACAGCACGGGCCGATCATAGTGGTT-- 579 ******************************************************* * consensus_6124#0 AGTGTGTTCGCGAGTCGGCGTACATTGCCGATTCGGCACGGGAAGAAGTGTTTGTATAAC 945 consensus_6124#1 ------------------------------------------------------------ consensus_6124#0 GCGAACGCGTACCACCTTAGAACCGAAGGTGTCCGAAGTTGCCGGTGATAGTGGTACCGC 1005 consensus_6124#1 ------------------------------------------------------------ consensus_6124#0 AA 1007 consensus_6124#1 -- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||