These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6128#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 820 fasta sequence [GAGGCCAGAATCGGCACGTAGGGCCTTAGCACGGATCAAAACAGTGTGGGGTAAAAAAATGCCACCCAACCACCAAAAAGCAATAACGTATTAAAACGGCAAACAAATCGCGCATACGGACAAAAAAAAAGCAAATCCTATCCTGTGACTGCAATTGTACACCTGCATATCGTATAAGGTGCAATTGCAAAAAAAGGGTCAAGAAACATTTCAAACCCCGCGGGGGGACTGATGAAAAGGAAGTGGCGACGGTGCGCGGCTCGCTCGCCCGCTCAACGTCAGCAAATGAGACATGAGTTTTTTTTTAATTTGTTTCCCTTTCTTTCTTTTANTGGTTTTTGAAAAGTGTAATCGAAAACTTGTATAACGGTGCCTTAGTTCTGGGGTGTGGGCCGCCCGTCCCATAGTTCAGTGCAGGTCAGCTAAACTTGTTTGTTCTCGTTTCTGGTCGTATTAGTCCTTAAGTCTTTCCTTTTNATTCGCTCTATCTCACTCTCATTCACTCTTTCTCTCGGCTGTATTATCTCTCAATCTTGTATGAAAACTAAACGGTGCCAACACACNAGAATCAGCAGCAAGGCAAAAGGTGTACAGTAAGACGACG-TATGGTGCGTAAAGATTGAATGGGTTACGTGGTTTAAGCCGAAGAGAAAAGGCTCTTAATTGCCTTAACGTTCANNGCAAGTGTTTCATAACACGGTTTGTTTGAGAAGTTANCATTGTACGACGGGTAATTGTTAAAACAGCGACTCGAATTTCCCCTCCCATTTTCCGATGTAAATCCCATCATCCCAAGCAATCCCAATTTAAGAATCGAGTT] [+] EMBL BX468458 [GAGGCCAGAATCGGCACGTAGGGCCTTAGCACGGATCAAAACAGTGTGGGGTAAAAAAATGCCACCCAACCACCAAAAAGCAATAACGTATTAAAACGGCAAACAAATCGCGCATACGGACAAAAAAAAAGCAAATCCTATCCTGTGACTGCAATTGTACACCTGCATATCGTATAAGGTGCAATTGCAAAAAAAGGGTCAAGAAACATTTCAAACCCCGCGGGGGGACTGATGAAAAGGAAGTGGCGACGGTGCGCGGCTCGCTCGCCCGCTCAACGTCAGCAAATGAGACATGAGTTTTTTTTTAATTTGTTTCCCTTTCTTTCTTTTANTGGTTTTTGAAAAGTGTAATCGAAAACTTGTATAACGGTGCCTTAGTTCTGGGGTGTGGGCCGCCCGTCCCATAGTTCAGTGCAGGTCAGCTAAACTTGTTTGTTCTCGTTTCTGGTCGTATTAGTCCTTAAGTCTTTCCTTTTNATTCGCTCTATCTCACTCTCATTCACTCTTTCTCTCGGCTGTATTATCTCTCAATCTTGTATGAAAACTAAACGGTGCCAACACACNAGAATCAGCAGCAAGGCAAAAGGTGTACAGTAAGACGACG TATGGTGCGTAAAGATTGAATGGGTTACGTGGTTTAAGCCGAAGAGAAAAGGCTCTTAATTGCCTTAACGTTCANNGCAAGTGTTTCATAACACGGTTTGTTTGAGAAGTTANCATTGTACGACG ] [+] EMBL BX627892 [ GTGGGGTAAAAAAATGCCACCCAACCACCAAAAAGCAATAACGTATTAAAACGGCAAACAAATCGCGCATACGGACAAAAAAAAAGCAAATCCTATCCTGTGACTGCAATTGTACACCTGCATATCGTATAAGGTGCAATTGCAAAAAAAGGGTCAAGAAACATTTCAAACCCCGCGGGGGGACTGATGAAAAGGAAGTGGCGACGGTGCGCGGCTCGCTCGCCCGCTCAACGTCAGCAAATGAGACATGAGTTTTTTTTTAATTTGTTTCCCTTTCTTTCTTTTTTTGGTTTTTGAAAAGTGTAATCGAAAACTTGTATAACGGTGCCTTAGTTCTGGGGTGTGGGCCGCCCGTCCCATAGTTCAGTGCAGGTCAGCTAAACTTGTTTGTTCTCGTTTCTGGTCGTATTAGTCCTTAAGTCTTTCCTTTTTATTCGCTCTATCTCACTCTCATTCACTCTTTCTCTCGGCTGTATTATCTCTCAATCTTGTATGAAAACTAAACGGTGCCAACACAC AGAATCAGCAGCAA GCAAAAGGTGTACAGTAAGACGACGTTTTTGTGCGTAAAGATTG AT GGTTA ATG TTAAG CGAAGAGAAA GCTC TAA TG CTTAA GT A AGCAA TGTTT ATAACAC GTTTG TTGAGAAG TAGCA TGTAGAAAGGGTAATTGTTAAAACAGCGACTCGAATTTCCCCTCCCATTTTCCGATGTAAATCCCATCATCCCAAGCAATCCCAATTTAAGAATCGAGTT] consensusID : consensus_6128#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 761 fasta sequence [CAGGANCTCCGCACGAGTGCANTTTTATCGCTCTATCTCACTCTCAGTTCACTCTTTCTCTCGGCTGTATTATCTCTCAATCTTGTATGAAAACTAAACGGTGCCAACACACAGAATCAGCAGGCAAGCAAAAGGTGTACAGTAAGACGACGTTTTTGTGCGTAAAGATTGATGGTTAATGTTAAGCGAACGAGAAAGCTCTAATGCTTAAGTAAGCAATGTTTATAACACGTTTGTCTGAGAAGTAGCATGTAGAAAGGTTAATTGTTAAAACAGCGACTCGAATTTCCCCTCCCATTTTCCGATGTAAATCCCATCATCCCAAGGCAATCCCAAATTTACAGAATCGAGTTCTTCCAGAGCGCGAAAGCAAAGGAGAAACGGATAGACAGGGGAACGGTAGAGCGTTTCGAAAACAAACTACAGGAAAACCCTCTTATATCAGTAGTAATACAGTAATTGTTAATAGTAGCGACTAAAAAGCATAGGGAAGAAAACAAACGTAATTGTGAAATTCGAGTGCCTAAATGAAAACGAATCAAAACGTTTATTACATTAGCATAGCTTAGAGCTTAGTGTAGCCAGTTTAGTGCTGTTTAGTGTGTAAGCGTCATAATTTAAACCCCCAATTGTATAAAAAAACGTATATTACAAAAGCAAAGAAGCGCGCGCGTGTGTGTGTAGCGCAGCATTAGCGGTAGATAGACAGGATAGATCTTATAAGCGACACAGATCAAATACTTATCAAAACGGCGACNAAT] [+] EMBL BX469777 [CAGGANCTCCGCACGAGTGCANTTTTATCGCTCTATCTCACTCTCAGTTCACTCTTTCTCTCGGCTGTATTATCTCTCAATCTTGTATGAAAACTAAACGGTGCCAACACACAGAATCAGCAGGCAAGCAAAAGGTGTACAGTAAGACGACGTTTTTGTGCGTAAAGATTGATGGTTAATGTTAAGCGAACGAGAAAGCTCTAATGCTTAAGTAAGCAATGTTTATAACACGTTTGTCTGAGAAGTAGCATGTAGAAAGGTTAATTGTTAAAACAGCGACTCGAATTTCCCCTCCCATTTTCCGATGTAAATCCCATCATCCCAAGGCAATCCCAAATTTACAGA ] [+] EMBL BX625468 [ GTGCGTAAAGATTGATGGTTAATGTTAAGCGAA GAGAAAGCTCTAATGCTTAAGTAAGCAATGTTTATAACACGTTTGT TGAGAAGTAGCATGTAGAAAGGTTAATTGTTAAAACAGCGACTCGAATTTCCCCTCCCATTTTCCGATGTAAATCCCATCATCCCAA GCAATCCC AATTTA AGAATCGAGTTCTTCCAGAGCGCGAAAGCAAAGGAGAAACGGATAGACAGGGGAACGGTAGAGCGTTTCGAAAACAAACTACAGGAAAACCCTCTTATATCAGTAGTAATACAGTAATTGTTAATAGTAGCGACTAAAAAGCATAGGGAAGAAAACAAACGTAATTGTGAAATTCGAGTGCCTAAATGAAAACGAATCAAAACGTTTATTACATTAGCATAGCTTAGAGCTTAGTGTAGCCAGTTTAGTGCTGTTTAGTGTGTAAGCGTCATAATTTAAACCCCCAATTGTATAAAAAAACGTATATTACAAAAGCAAAGAAGCGCGCGCGTGTGTGTGTAGCGCAGCATTAGCGGTAGATAGACAGGATAGATCTTATAAGCGACACAGATCAAATACTTATCAAAACGGCGACNAAT] consensusID : consensus_6128#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 757 fasta sequence [NGCANGAATCCCCCGNCGGTTAAACGGTGCCAACACACAGAATCAGCAGCAGCAAAAGGTGTACAGTAAGACGACGTTTTTGTGCGTAAAGATTGATGGTTAATGTTAAGCGAAGAGAAAGCTCTAATGCTTAAGTAAGCNATGTTTATAACACGTTTGTTGAGAAGTAGCATGTAGAAAGGTTAATTGTTAAAACAGCGACTCGAATTTCCCCTCCCATATTTCCGATGTAAATCCCATCATACCCAAGCAATACCCAATTTAAGAATCGAGTTCTTCCAGAGCGCGAAAGCAAAGGAGAAACGGATAGACACGGCGAACGGTAGAGCGTTTCGAAAACAAACTACAGGAAAACCCTCTTATATCAGCTAGTAATACAGTAATTGTCTANNTAGTAGCGACTACAACAGCATAGGGAAGAAAACAAACGTAATTTGTGAAATTCGAGCTGCCTAAACTGAAAACGAATCAAAACGTCNATTCACATAACATAGCTNAGAGCTTAGCTGTACAGCCAGTATATAGNTGCTGAACGTGTGTAAGCGTCATAATCTTAAACCCCAATGGTAATAACNCAACACAACGTATATNACCAAAANGCAAAGAAAAGCGGCGCGCGTGTGTAGTGTACGCNGCAGCATNAAGNCGGTAGAATAGACAAGGATAGCANTCCTAAATAAGCGACCACAGANTCACATACTTTATCCANNANAGGGAACAATGTNNTGGCCANAAACAGGCATACAAAACATACAAA] [+] EMBL AL696378 [NGCANGAATCCCCCGNCGGTTAAACGGTGCCAACACACAGAATCAGCAGCAGCAAAAGGTGTACAGTAAGACGACGTTTTTGTGCGTAAAGATTGATGGTTAATGTTAAGCGAAGAGAAAGCTCTAATGCTTAAGTAAGCNATGTTTATAACACGTTTGTTGAGAAGTAGCATGTAGAAAGGTTAATTGTTAAAACAGCGACTCGAATTTCCCCTCCCATATTTCCGATGTAAATCCCATCATACCCAAGCAATACCCAATTTAAGAATCGAGTTCTTCCAGAGCGCGAAAGCAAAGGAGAAACGGATAGACACGGCGAACGGTAGAGCGTTTCGAAAACAAACTACAGGAAAACCCTCTTATATCAGCTAGTAATACAGTAATTGTCTANNTAGTAGCGACTACAACAGCATAGGGAAGAAAACAAACGTAATTTGTGAAATTCGAGCTGCCTAAACTGAAAACGAATCAAAACGTCNATTCACATAACATAGCTNAGAGCTTAGCTGTACAGCCAGTATATAGNTGCTGAACGTGTGTAAGCGTCATAATCTTAAACCCCAATGGTAATAACNCAACACAACGTATATNACCAAAANGCAAAGAAAAGCGGCGCGCGTGTGTAGTGTACGCNGCAGCATNAAGNCGGTAGAATAGACAAGGATAGCANTCCTAAATAAGCGACCACAGANTCACATACTTTATCCANNANAGGGAACAATGTNNTGGCCANAAACAGGCATACAAAACATACAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6128#1 ---CAGGANCTCCGCACGAGTGCANTTTTATCGCTCTATCTCACTCTCAGTTCACTCTTT 57 consensus_6128#2 ------------------------------------------------------------ consensus_6128#0 GAGGCCAGAATCGGCACGTAGGGCCTTAGCACGGATCAAAACAGTGTGGGGTAAAAAAAT 60 consensus_6128#1 CTCTCGGCTGTATTATCTCTCAATCTTGTATGAAAACTAAACGGTGCCAACACACAGAAT 117 consensus_6128#2 ---------------NGCANGAATCCCCC--GNCGGTTAAACGGTGCCAACACACAGAAT 43 consensus_6128#0 GCCACCCAACCACCAAAAAGCAATAACGTATTAAAACGGCAAACAAATCGCGCATACGGA 120 *** * * ** * consensus_6128#1 CAGCAGGCAAGCAAAAGGTGTACAGTAA--GACGACGTTTTTGTGCGTAAAGATTGATGG 175 consensus_6128#2 CAGCAGC--AGCAAAAGGTGTACAGTAA--GACGACGTTTTTGTGCGTAAAGATTGATGG 99 consensus_6128#0 CAAAAAAAAAGCAAATCCTATCCTGTGACTGCAATTGTACACCTGCATATCGTATAAGGT 180 ** * ****** * * * ** * * ** *** ** * * * * consensus_6128#1 TTAATGTTAAGCGAACG----AGAAA-GCTCTAATGCTTAAGTAAGCAATGTTTATAACA 230 consensus_6128#2 TTAATGTTAAGCGAA-G----AGAAA-GCTCTAATGCTTAAGTAAGCNATGTTTATAACA 153 consensus_6128#0 GCAATTGCAAAAAAAGGGTCAAGAAACATTTCAAACCCCGCGGGGGGACTGATGAAAAGG 240 *** ** ** * ***** * ** * * * ** * * ** consensus_6128#1 CGTTTGTC-TGAGAAGTAGCATGTAGAAAGGTTAATTGTTAAAACA-GCGACTCGAATTT 288 consensus_6128#2 CGTTTGT--TGAGAAGTAGCATGTAGAAAGGTTAATTGTTAAAACA-GCGACTCGAATTT 210 consensus_6128#0 AAGTGGCGACGGTGCGCGGCTCGCTCGCCCGCTCAACGTCAGCAAATGAGACATGAGTTT 300 * * * * ** * * * * ** * * * * *** ** *** consensus_6128#1 CCCCTCCCAT-TTTCCGATGTAAATCCCATCATCCCAAGGCAATCCCAAATTTACAGAAT 347 consensus_6128#2 CCCCTCCCATATTTCCGATGTAAATCCCATCATACCCAAGCAATACCCAATTTA-AGAAT 269 consensus_6128#0 TTTTTTAATTTGTTTCCCTTTCTTTCTTTTANTGGTTTTTGAAAAGTGTAATCGAAAACT 360 * * ** * * * ** * * ** * * * * * consensus_6128#1 CGAGTTCTTCCAGAGCGCGAAAGCAAAGGAG-AAACGGATAGACA-GGGGAACGGTAGAG 405 consensus_6128#2 CGAGTTCTTCCAGAGCGCGAAAGCAAAGGAG-AAACGGATAGACACGGCGAACGGTAGAG 328 consensus_6128#0 TG---TATAACGGTGCCTTAGTTCTGGGGTGTGGGCCGCCCGTCCCATAGTTCAGTGCAG 417 * * * * * ** * * ** * * * * * * * ** ** consensus_6128#1 CGTTTCGAAAACAAACTACAGGAAAACCCTCTTATATCAG-TAGTAATACAGTAATTGTT 464 consensus_6128#2 CGTTTCGAAAACAAACTACAGGAAAACCCTCTTATATCAGCTAGTAATACAGTAATTGTC 388 consensus_6128#0 GTCAGCTAAACTTGTTTGTTCTCGTTTCTGGTCGTATTAGTCCTTAAGTCTTTCCTTTTN 477 * *** * * * *** ** *** * * ** * consensus_6128#1 --AATAGTAGCGACT-AAAA-AGCATAGGGAAGAAAACAAACGTAATT-GTGAAATTCGA 519 consensus_6128#2 TANNTAGTAGCGACT-ACAACAGCATAGGGAAGAAAACAAACGTAATTTGTGAAATTCGA 447 consensus_6128#0 --ATTCGCTCTATCTCACTCTCATTCACTCTTTCTCTCGGCTGTATTATCTCTCAATCTT 535 * * ** * * * *** * * * ** consensus_6128#1 G-TGCCTAAA-TGAAAACGAATCAAAACGTTTATTACATTAGCATAGCTTAGAGCTTAG- 576 consensus_6128#2 GCTGCCTAAACTGAAAACGAATCAAAACGTCNATTCACATAACATAGCTNAGAGCTTAGC 507 consensus_6128#0 G-TATGAAAACT-AAACGGTGCCAACACACNAGAATCAGCAGCAAGGCAAAAGGTGTACA 593 * * *** * *** * *** ** * ** ** * * ** consensus_6128#1 --TGTAGCCAGTTTAGTGC-TGTTTA--GTGTGTAAGCGTCATAATTTAAACCCCCAATT 631 consensus_6128#2 TGTACAGCCAGTATATAGN-TGCTGAACGTGTGTAAGCGTCATAATCTTAAACCCCAATG 566 consensus_6128#0 -GTA-AGACGACGTATGGTGCGTAAAGATTGAATGGGTTACGTGGTTTAAGCCGAAGAGA 651 * ** * ** * * * ** * * * * * * * * * consensus_6128#1 GTA------TAA----AAAAACGTATATTAC--AAAAGCAAAGAA-----GCGCGCGCGT 674 consensus_6128#2 GTAATAACNCAA----CACAACGTATATNACCAAAANGCAAAGAAAAGCGGCGCGCGTGT 622 consensus_6128#0 AAAGGCTCTTAATTGCCTTAACGTTCANNGC--AAGTGTTTCATAACACGGTTTGTTTGA 709 * ** ***** * * ** * * * * * consensus_6128#1 GT-GTGTGTAGCGCAGCATTA--GCGGTAGA-TAGACA-GGATAG--ATCTT--ATAAGC 725 consensus_6128#2 GTAGTGTACGCNGCAGCATNAAGNCGGTAGAATAGACAAGGATAGCANTCCTAAATAAGC 682 consensus_6128#0 GAAGTTANCATTGTACGACGG--GTAATTGTTAAAACAGCGACTCGAATTTCC-CCTCCC 766 * ** * * * * * * *** ** * * consensus_6128#1 GAC-ACAGAT-CAAATACTTA--TCAAAACGGCGACNAAT-------------------- 761 consensus_6128#2 GACCACAGANTCACATACTTTATCCANNANAGGGAACAATGTNNTGGCCANAAACAGGCA 742 consensus_6128#0 ATTTTCCGATGTAAATCCCATCATCCCAAGCAATCCCAATTTAAGAATCGAGTT------ 820 * ** * ** * * * *** consensus_6128#1 --------------- consensus_6128#2 TACAAAACATACAAA 757 consensus_6128#0 --------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||