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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6128#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 820 fasta sequence
[GAGGCCAGAATCGGCACGTAGGGCCTTAGCACGGATCAAAACAGTGTGGGGTAAAAAAATGCCACCCAACCACCAAAAAGCAATAACGTATTAAAACGGCAAACAAATCGCGCATACGGACAAAAAAAAAGCAAATCCTATCCTGTGACTGCAATTGTACACCTGCATATCGTATAAGGTGCAATTGCAAAAAAAGGGTCAAGAAACATTTCAAACCCCGCGGGGGGACTGATGAAAAGGAAGTGGCGACGGTGCGCGGCTCGCTCGCCCGCTCAACGTCAGCAAATGAGACATGAGTTTTTTTTTAATTTGTTTCCCTTTCTTTCTTTTANTGGTTTTTGAAAAGTGTAATCGAAAACTTGTATAACGGTGCCTTAGTTCTGGGGTGTGGGCCGCCCGTCCCATAGTTCAGTGCAGGTCAGCTAAACTTGTTTGTTCTCGTTTCTGGTCGTATTAGTCCTTAAGTCTTTCCTTTTNATTCGCTCTATCTCACTCTCATTCACTCTTTCTCTCGGCTGTATTATCTCTCAATCTTGTATGAAAACTAAACGGTGCCAACACACNAGAATCAGCAGCAAGGCAAAAGGTGTACAGTAAGACGACG-TATGGTGCGTAAAGATTGAATGGGTTACGTGGTTTAAGCCGAAGAGAAAAGGCTCTTAATTGCCTTAACGTTCANNGCAAGTGTTTCATAACACGGTTTGTTTGAGAAGTTANCATTGTACGACGGGTAATTGTTAAAACAGCGACTCGAATTTCCCCTCCCATTTTCCGATGTAAATCCCATCATCCCAAGCAATCCCAATTTAAGAATCGAGTT]
[+] EMBL BX468458 [GAGGCCAGAATCGGCACGTAGGGCCTTAGCACGGATCAAAACAGTGTGGGGTAAAAAAATGCCACCCAACCACCAAAAAGCAATAACGTATTAAAACGGCAAACAAATCGCGCATACGGACAAAAAAAAAGCAAATCCTATCCTGTGACTGCAATTGTACACCTGCATATCGTATAAGGTGCAATTGCAAAAAAAGGGTCAAGAAACATTTCAAACCCCGCGGGGGGACTGATGAAAAGGAAGTGGCGACGGTGCGCGGCTCGCTCGCCCGCTCAACGTCAGCAAATGAGACATGAGTTTTTTTTTAATTTGTTTCCCTTTCTTTCTTTTANTGGTTTTTGAAAAGTGTAATCGAAAACTTGTATAACGGTGCCTTAGTTCTGGGGTGTGGGCCGCCCGTCCCATAGTTCAGTGCAGGTCAGCTAAACTTGTTTGTTCTCGTTTCTGGTCGTATTAGTCCTTAAGTCTTTCCTTTTNATTCGCTCTATCTCACTCTCATTCACTCTTTCTCTCGGCTGTATTATCTCTCAATCTTGTATGAAAACTAAACGGTGCCAACACACNAGAATCAGCAGCAAGGCAAAAGGTGTACAGTAAGACGACG TATGGTGCGTAAAGATTGAATGGGTTACGTGGTTTAAGCCGAAGAGAAAAGGCTCTTAATTGCCTTAACGTTCANNGCAAGTGTTTCATAACACGGTTTGTTTGAGAAGTTANCATTGTACGACG ]
[+] EMBL BX627892 [ GTGGGGTAAAAAAATGCCACCCAACCACCAAAAAGCAATAACGTATTAAAACGGCAAACAAATCGCGCATACGGACAAAAAAAAAGCAAATCCTATCCTGTGACTGCAATTGTACACCTGCATATCGTATAAGGTGCAATTGCAAAAAAAGGGTCAAGAAACATTTCAAACCCCGCGGGGGGACTGATGAAAAGGAAGTGGCGACGGTGCGCGGCTCGCTCGCCCGCTCAACGTCAGCAAATGAGACATGAGTTTTTTTTTAATTTGTTTCCCTTTCTTTCTTTTTTTGGTTTTTGAAAAGTGTAATCGAAAACTTGTATAACGGTGCCTTAGTTCTGGGGTGTGGGCCGCCCGTCCCATAGTTCAGTGCAGGTCAGCTAAACTTGTTTGTTCTCGTTTCTGGTCGTATTAGTCCTTAAGTCTTTCCTTTTTATTCGCTCTATCTCACTCTCATTCACTCTTTCTCTCGGCTGTATTATCTCTCAATCTTGTATGAAAACTAAACGGTGCCAACACAC AGAATCAGCAGCAA GCAAAAGGTGTACAGTAAGACGACGTTTTTGTGCGTAAAGATTG AT GGTTA ATG TTAAG CGAAGAGAAA GCTC TAA TG CTTAA GT A AGCAA TGTTT ATAACAC GTTTG TTGAGAAG TAGCA TGTAGAAAGGGTAATTGTTAAAACAGCGACTCGAATTTCCCCTCCCATTTTCCGATGTAAATCCCATCATCCCAAGCAATCCCAATTTAAGAATCGAGTT]
consensusID : consensus_6128#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 761 fasta sequence
[CAGGANCTCCGCACGAGTGCANTTTTATCGCTCTATCTCACTCTCAGTTCACTCTTTCTCTCGGCTGTATTATCTCTCAATCTTGTATGAAAACTAAACGGTGCCAACACACAGAATCAGCAGGCAAGCAAAAGGTGTACAGTAAGACGACGTTTTTGTGCGTAAAGATTGATGGTTAATGTTAAGCGAACGAGAAAGCTCTAATGCTTAAGTAAGCAATGTTTATAACACGTTTGTCTGAGAAGTAGCATGTAGAAAGGTTAATTGTTAAAACAGCGACTCGAATTTCCCCTCCCATTTTCCGATGTAAATCCCATCATCCCAAGGCAATCCCAAATTTACAGAATCGAGTTCTTCCAGAGCGCGAAAGCAAAGGAGAAACGGATAGACAGGGGAACGGTAGAGCGTTTCGAAAACAAACTACAGGAAAACCCTCTTATATCAGTAGTAATACAGTAATTGTTAATAGTAGCGACTAAAAAGCATAGGGAAGAAAACAAACGTAATTGTGAAATTCGAGTGCCTAAATGAAAACGAATCAAAACGTTTATTACATTAGCATAGCTTAGAGCTTAGTGTAGCCAGTTTAGTGCTGTTTAGTGTGTAAGCGTCATAATTTAAACCCCCAATTGTATAAAAAAACGTATATTACAAAAGCAAAGAAGCGCGCGCGTGTGTGTGTAGCGCAGCATTAGCGGTAGATAGACAGGATAGATCTTATAAGCGACACAGATCAAATACTTATCAAAACGGCGACNAAT]
[+] EMBL BX469777 [CAGGANCTCCGCACGAGTGCANTTTTATCGCTCTATCTCACTCTCAGTTCACTCTTTCTCTCGGCTGTATTATCTCTCAATCTTGTATGAAAACTAAACGGTGCCAACACACAGAATCAGCAGGCAAGCAAAAGGTGTACAGTAAGACGACGTTTTTGTGCGTAAAGATTGATGGTTAATGTTAAGCGAACGAGAAAGCTCTAATGCTTAAGTAAGCAATGTTTATAACACGTTTGTCTGAGAAGTAGCATGTAGAAAGGTTAATTGTTAAAACAGCGACTCGAATTTCCCCTCCCATTTTCCGATGTAAATCCCATCATCCCAAGGCAATCCCAAATTTACAGA ]
[+] EMBL BX625468 [ GTGCGTAAAGATTGATGGTTAATGTTAAGCGAA GAGAAAGCTCTAATGCTTAAGTAAGCAATGTTTATAACACGTTTGT TGAGAAGTAGCATGTAGAAAGGTTAATTGTTAAAACAGCGACTCGAATTTCCCCTCCCATTTTCCGATGTAAATCCCATCATCCCAA GCAATCCC AATTTA AGAATCGAGTTCTTCCAGAGCGCGAAAGCAAAGGAGAAACGGATAGACAGGGGAACGGTAGAGCGTTTCGAAAACAAACTACAGGAAAACCCTCTTATATCAGTAGTAATACAGTAATTGTTAATAGTAGCGACTAAAAAGCATAGGGAAGAAAACAAACGTAATTGTGAAATTCGAGTGCCTAAATGAAAACGAATCAAAACGTTTATTACATTAGCATAGCTTAGAGCTTAGTGTAGCCAGTTTAGTGCTGTTTAGTGTGTAAGCGTCATAATTTAAACCCCCAATTGTATAAAAAAACGTATATTACAAAAGCAAAGAAGCGCGCGCGTGTGTGTGTAGCGCAGCATTAGCGGTAGATAGACAGGATAGATCTTATAAGCGACACAGATCAAATACTTATCAAAACGGCGACNAAT]
consensusID : consensus_6128#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 757 fasta sequence
[NGCANGAATCCCCCGNCGGTTAAACGGTGCCAACACACAGAATCAGCAGCAGCAAAAGGTGTACAGTAAGACGACGTTTTTGTGCGTAAAGATTGATGGTTAATGTTAAGCGAAGAGAAAGCTCTAATGCTTAAGTAAGCNATGTTTATAACACGTTTGTTGAGAAGTAGCATGTAGAAAGGTTAATTGTTAAAACAGCGACTCGAATTTCCCCTCCCATATTTCCGATGTAAATCCCATCATACCCAAGCAATACCCAATTTAAGAATCGAGTTCTTCCAGAGCGCGAAAGCAAAGGAGAAACGGATAGACACGGCGAACGGTAGAGCGTTTCGAAAACAAACTACAGGAAAACCCTCTTATATCAGCTAGTAATACAGTAATTGTCTANNTAGTAGCGACTACAACAGCATAGGGAAGAAAACAAACGTAATTTGTGAAATTCGAGCTGCCTAAACTGAAAACGAATCAAAACGTCNATTCACATAACATAGCTNAGAGCTTAGCTGTACAGCCAGTATATAGNTGCTGAACGTGTGTAAGCGTCATAATCTTAAACCCCAATGGTAATAACNCAACACAACGTATATNACCAAAANGCAAAGAAAAGCGGCGCGCGTGTGTAGTGTACGCNGCAGCATNAAGNCGGTAGAATAGACAAGGATAGCANTCCTAAATAAGCGACCACAGANTCACATACTTTATCCANNANAGGGAACAATGTNNTGGCCANAAACAGGCATACAAAACATACAAA]
[+] EMBL AL696378 [NGCANGAATCCCCCGNCGGTTAAACGGTGCCAACACACAGAATCAGCAGCAGCAAAAGGTGTACAGTAAGACGACGTTTTTGTGCGTAAAGATTGATGGTTAATGTTAAGCGAAGAGAAAGCTCTAATGCTTAAGTAAGCNATGTTTATAACACGTTTGTTGAGAAGTAGCATGTAGAAAGGTTAATTGTTAAAACAGCGACTCGAATTTCCCCTCCCATATTTCCGATGTAAATCCCATCATACCCAAGCAATACCCAATTTAAGAATCGAGTTCTTCCAGAGCGCGAAAGCAAAGGAGAAACGGATAGACACGGCGAACGGTAGAGCGTTTCGAAAACAAACTACAGGAAAACCCTCTTATATCAGCTAGTAATACAGTAATTGTCTANNTAGTAGCGACTACAACAGCATAGGGAAGAAAACAAACGTAATTTGTGAAATTCGAGCTGCCTAAACTGAAAACGAATCAAAACGTCNATTCACATAACATAGCTNAGAGCTTAGCTGTACAGCCAGTATATAGNTGCTGAACGTGTGTAAGCGTCATAATCTTAAACCCCAATGGTAATAACNCAACACAACGTATATNACCAAAANGCAAAGAAAAGCGGCGCGCGTGTGTAGTGTACGCNGCAGCATNAAGNCGGTAGAATAGACAAGGATAGCANTCCTAAATAAGCGACCACAGANTCACATACTTTATCCANNANAGGGAACAATGTNNTGGCCANAAACAGGCATACAAAACATACAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6128#1 ---CAGGANCTCCGCACGAGTGCANTTTTATCGCTCTATCTCACTCTCAGTTCACTCTTT 57
consensus_6128#2 ------------------------------------------------------------
consensus_6128#0 GAGGCCAGAATCGGCACGTAGGGCCTTAGCACGGATCAAAACAGTGTGGGGTAAAAAAAT 60
consensus_6128#1 CTCTCGGCTGTATTATCTCTCAATCTTGTATGAAAACTAAACGGTGCCAACACACAGAAT 117
consensus_6128#2 ---------------NGCANGAATCCCCC--GNCGGTTAAACGGTGCCAACACACAGAAT 43
consensus_6128#0 GCCACCCAACCACCAAAAAGCAATAACGTATTAAAACGGCAAACAAATCGCGCATACGGA 120
*** * * ** *
consensus_6128#1 CAGCAGGCAAGCAAAAGGTGTACAGTAA--GACGACGTTTTTGTGCGTAAAGATTGATGG 175
consensus_6128#2 CAGCAGC--AGCAAAAGGTGTACAGTAA--GACGACGTTTTTGTGCGTAAAGATTGATGG 99
consensus_6128#0 CAAAAAAAAAGCAAATCCTATCCTGTGACTGCAATTGTACACCTGCATATCGTATAAGGT 180
** * ****** * * * ** * * ** *** ** * * * *
consensus_6128#1 TTAATGTTAAGCGAACG----AGAAA-GCTCTAATGCTTAAGTAAGCAATGTTTATAACA 230
consensus_6128#2 TTAATGTTAAGCGAA-G----AGAAA-GCTCTAATGCTTAAGTAAGCNATGTTTATAACA 153
consensus_6128#0 GCAATTGCAAAAAAAGGGTCAAGAAACATTTCAAACCCCGCGGGGGGACTGATGAAAAGG 240
*** ** ** * ***** * ** * * * ** * * **
consensus_6128#1 CGTTTGTC-TGAGAAGTAGCATGTAGAAAGGTTAATTGTTAAAACA-GCGACTCGAATTT 288
consensus_6128#2 CGTTTGT--TGAGAAGTAGCATGTAGAAAGGTTAATTGTTAAAACA-GCGACTCGAATTT 210
consensus_6128#0 AAGTGGCGACGGTGCGCGGCTCGCTCGCCCGCTCAACGTCAGCAAATGAGACATGAGTTT 300
* * * * ** * * * * ** * * * * *** ** ***
consensus_6128#1 CCCCTCCCAT-TTTCCGATGTAAATCCCATCATCCCAAGGCAATCCCAAATTTACAGAAT 347
consensus_6128#2 CCCCTCCCATATTTCCGATGTAAATCCCATCATACCCAAGCAATACCCAATTTA-AGAAT 269
consensus_6128#0 TTTTTTAATTTGTTTCCCTTTCTTTCTTTTANTGGTTTTTGAAAAGTGTAATCGAAAACT 360
* * ** * * * ** * * ** * * * * *
consensus_6128#1 CGAGTTCTTCCAGAGCGCGAAAGCAAAGGAG-AAACGGATAGACA-GGGGAACGGTAGAG 405
consensus_6128#2 CGAGTTCTTCCAGAGCGCGAAAGCAAAGGAG-AAACGGATAGACACGGCGAACGGTAGAG 328
consensus_6128#0 TG---TATAACGGTGCCTTAGTTCTGGGGTGTGGGCCGCCCGTCCCATAGTTCAGTGCAG 417
* * * * * ** * * ** * * * * * * * ** **
consensus_6128#1 CGTTTCGAAAACAAACTACAGGAAAACCCTCTTATATCAG-TAGTAATACAGTAATTGTT 464
consensus_6128#2 CGTTTCGAAAACAAACTACAGGAAAACCCTCTTATATCAGCTAGTAATACAGTAATTGTC 388
consensus_6128#0 GTCAGCTAAACTTGTTTGTTCTCGTTTCTGGTCGTATTAGTCCTTAAGTCTTTCCTTTTN 477
* *** * * * *** ** *** * * ** *
consensus_6128#1 --AATAGTAGCGACT-AAAA-AGCATAGGGAAGAAAACAAACGTAATT-GTGAAATTCGA 519
consensus_6128#2 TANNTAGTAGCGACT-ACAACAGCATAGGGAAGAAAACAAACGTAATTTGTGAAATTCGA 447
consensus_6128#0 --ATTCGCTCTATCTCACTCTCATTCACTCTTTCTCTCGGCTGTATTATCTCTCAATCTT 535
* * ** * * * *** * * * **
consensus_6128#1 G-TGCCTAAA-TGAAAACGAATCAAAACGTTTATTACATTAGCATAGCTTAGAGCTTAG- 576
consensus_6128#2 GCTGCCTAAACTGAAAACGAATCAAAACGTCNATTCACATAACATAGCTNAGAGCTTAGC 507
consensus_6128#0 G-TATGAAAACT-AAACGGTGCCAACACACNAGAATCAGCAGCAAGGCAAAAGGTGTACA 593
* * *** * *** * *** ** * ** ** * * **
consensus_6128#1 --TGTAGCCAGTTTAGTGC-TGTTTA--GTGTGTAAGCGTCATAATTTAAACCCCCAATT 631
consensus_6128#2 TGTACAGCCAGTATATAGN-TGCTGAACGTGTGTAAGCGTCATAATCTTAAACCCCAATG 566
consensus_6128#0 -GTA-AGACGACGTATGGTGCGTAAAGATTGAATGGGTTACGTGGTTTAAGCCGAAGAGA 651
* ** * ** * * * ** * * * * * * * * *
consensus_6128#1 GTA------TAA----AAAAACGTATATTAC--AAAAGCAAAGAA-----GCGCGCGCGT 674
consensus_6128#2 GTAATAACNCAA----CACAACGTATATNACCAAAANGCAAAGAAAAGCGGCGCGCGTGT 622
consensus_6128#0 AAAGGCTCTTAATTGCCTTAACGTTCANNGC--AAGTGTTTCATAACACGGTTTGTTTGA 709
* ** ***** * * ** * * * * *
consensus_6128#1 GT-GTGTGTAGCGCAGCATTA--GCGGTAGA-TAGACA-GGATAG--ATCTT--ATAAGC 725
consensus_6128#2 GTAGTGTACGCNGCAGCATNAAGNCGGTAGAATAGACAAGGATAGCANTCCTAAATAAGC 682
consensus_6128#0 GAAGTTANCATTGTACGACGG--GTAATTGTTAAAACAGCGACTCGAATTTCC-CCTCCC 766
* ** * * * * * * *** ** * *
consensus_6128#1 GAC-ACAGAT-CAAATACTTA--TCAAAACGGCGACNAAT-------------------- 761
consensus_6128#2 GACCACAGANTCACATACTTTATCCANNANAGGGAACAATGTNNTGGCCANAAACAGGCA 742
consensus_6128#0 ATTTTCCGATGTAAATCCCATCATCCCAAGCAATCCCAATTTAAGAATCGAGTT------ 820
* ** * ** * * * ***
consensus_6128#1 ---------------
consensus_6128#2 TACAAAACATACAAA 757
consensus_6128#0 ---------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||