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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6138#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 854 fasta sequence
[CAAAAATGATTTTTTATTGCTCTTGCACTGAACGTAACAAAC--AAAAAGAAGCTCCATTTCAAAATGACGGCCGACCAAAATTGACGACTTTTCACTTTTCTTGTACCGCTGACCCAAGCAGTTGAGCAATTTTTGCGCCCTCTGTTGCGATAGCAAATTTAAATGC-GCCGTTTTTACG-CCCCTTTTCTTTGAT-CGCTT-TATGCTGAAGAAGATGCTAATGGAATGGATGAAAAGCATGGCTTGTTCGAGTGGAGTGCACAACACAAGCAATCGATTGTATTTTCACTTTCACAAACCCTGACAGATAAGGATGCGA-AATCAATCTTTTGCTGTGCTGTAATGGAAGAAAGTGCTATTAACGTAGAAGGAATTGGAAGAACATTTTCTCGACCGGCTGTAATACAATCTGGCCGCCCTG-GGGGGGAA-GGGGAATGTGTCTGTTGCGTGCGTTCGTTGGTCCGTGTGTGCGTGATTCCGGATGCCTC-ACACCAGGCGGCATATTTAACATTTTAAGTAACAATACTAGAAA-AACAGCAGTCAGTTCCTGCGCTCC-GTTCTCCTGCTTCGCGCGTCTAAATGCGGCTCTTGCCACTGCCCGTCTTGATGTCGAACAGCTTCCGGACAAAGTACACCTGCACCGAGGTGGTGAACACGATCACCAGGATCTGCAGCACGGACCACTTCCAGATGTACGCATTGTTGTCCAGAATCAGCGCATAATCGCGGGCCTCGTTGTTGCGCGAGTGGGCCTGATACTGGAACATGGCGTTCAGGTTCCTTTCCACCGTCGAAATGGTGCCCGTAAAGTTGTCCATGTTGACGTTCAAATCTTCGATCTCTCAGTAGGCCAACAG]
[-] EMBL BM588022 [CAAAAATGATTTTTTATTGCTCTTGCACTGAACGTAACAAACAAAAAAAGAAGCTCCATTTCAAAATGACGGCCGACCAAAATTGACGACTTTTCACTTTTCTTGTACCGCTGACCCAAGCAGTTGAGCAATTTTTGCGCCCTCTGTTGCGATAGCAAATTTAAATGC GCCGTTTTTACG CCCCTTTTCTTTGAT CGCTT TATGCTGAAGAAGATGCTAATGGAATGGATGAAAAGCATGGCTTGTTCGAGTGGAGTGCACAACACAAGCAATCGATTGTATTTTCACTTTCACAAACCCTGACAGATAAGGATGCGA AATCAATCTTTTGCTGTGCTGTAATGGAAGAAAGTGCTATTAACGTAGAAGGAATTGGAAGAACATTTTCTCGACCGGCTGcgg ]
[+] EMBL CNS09O2Y [ ATTGCTCTTGCACTGAACGTAACAAAC AAAAAGAAGCTCCATTTCAAGATGACGACCGACCAAAATTGACGACTTTTCACTTTTCTTGTACCGCTGACCCAAGCAGTTGAGCAATTTTGGTGCTCTCTGTTGCGATA CAAATTTAAATGC GCCGTTTTTATG CCCCTTTTCTTTGAT CCCTTATATGCTGCAGAAGATGCAAATGGAATGGATGAAAAGCATGGTTTGTTCGAGTGGAGTGCACAACAAAAGCAATCGATTGTATTTTCACTTGCACAAACCCTGACAGATAAGGATGCGA AATCAATCTTTTGCTGTACTGTAATGGAAGAAAATTACATTAACGTAGAAGGAATTGGAAGAACATTTTCTCGACCGGCTGTAATACAATCTGGCCGCCCTGAGGGGGGAAGGGGGAATGTGTATATGGCGTGCGTTCGTTGGTCCGTGTGTCCGTAATTTCGGATGCCTC AAACCAGGGGGCATATTTAACATTTTAAGTAACAATACTAGAAA AACAGCAGTTAGTTCCTGCGCTCC GTTCTCCTGCTTCGCGCGTTTAAATGCGGCTCTTGCCACTGCCCGTTTTGATGTCGAACAGCTTCCGGACAAAGTACACCTGCACCGAGGTGGTGAACACGATCACCAGGATCTGCAGCACGGACCACTTCCAGATGTACGCATTGTTGTCCAGAATCAGCGCATAATCGCGGGCCTTGTTGTTGCGCGAGTTGGCCTGATACTGGAACATGGCGTTCAGGTTCCTTTCCACCGTCGAAATGGTGCCCGTAAAGTTGTCCATGTTGACGTTCAAATCTTCGATCTCTCAGTAGGCCAACAG]
[-] EMBL BX625339 [ CCATTTCAAAATGACGNCNGACCAAAATTGACGACTTTTCACTTTTCTTGTACCGCTGACCCAAGCAGTTGAGCAATTTTTGCGCCNTCTGTTGCGATAGCAAATTTAAATGC GCCGTTTTTACG CCCCTTTTCTTTGAT CGCTT TATGCTGAAGAAGATGCTAATGGAATGGATGAAAAGCATGGCTTGTTCGAGTGGAGTGCACAACACAAGCAATCGATTGTATTTTCACTTTCACAAACCCTGACAGATAAGGATGCGA AATCAATCTTTTGCTGTGCTGTAATGGAAGAAAGTGCTATTAACGTAGAAGGAATTGGAAGAACATTTTCTCGACCGGCTGTAATACAATCTGGCCGCCCT GGGGGGAA GGGGAATGTGTCTGTTGCGTGCGTTCGTTGGTCCGTGTGTGCTTGATTCCCGATGCCACTACACCAGGCGGCATATTTAACATTTTAAGTAACAATACTAGAAACAACAGCAGTCAGTTCCTGCGCCCCTCTTCTCCTGCTTCGCGCGTCTAAATGCGGCTCTTGCCACTGCCCGTCTTGATGTCGAACAGCTTCCGGACAAAGTACACCTGCACCGAGGTGGTGAACACGATCACCAGGATCTGCAGCACGGACCACTTCCAGATGTACGCATTGTTGTCCAGAATCAGCGCATAATCGCGGGCCTCGTTGTTGCGCGAGTGGGCCTGATACTGGAACATGGCGTTCAGGTTCCGTTCCA ]
[-] EMBL CF542122 [ AATGCNGCCGTTTNTATGCCCCCTNNTNTTNGATCCNNTA TATGCTGCAGAAGATGCNAATGNNATGGATGAAAAGCATGGTTTGTTCGAGTGGAGTGCACAACAAAAGCNATCGATTGTATTTTCACTTGCACAAACCCTGACAGATAAGGATGCGANNATCAATCTTTTGCTGTACTGTAATGGAAGAAAATTACATTAACGTAGAAGGAATTGGAAGAACATTTTCTCGACCGGCTGTAATACAATCTGGCCGCCCTG GGGGGGAA GGGGAATGTGTCTGTTGCGTGCGTTCGTTGGTCCGTGTGTGCGTGATTCCGGATGCCTC ACACCAGGCGGCATATTTAACATTTTAAGTAACAATACTAGAAA AACAGCAGTCAGTTCCTGCGCTCC GTTCTCCTGCTTCGCGCGTCTAAATGCGGCTCTTGCCACTGCCCGTCTTGATGTCGAACAGCTTCCGGACAAAGTACACCTGCACCGAGGTGGTGAACACGATCACCAGGATATGCAGCACGGACCACTTCCAGATGTACGCATTGTTGTCCAGAATCAGCGCATAATCGCGGGCCTCGTTGTTGCGCGAGTGGGCCTGATACTGGAACATGGCGTTCAGGTTCCTTTCCACCGTCGAAATGGTGCCCGTAAAGTTGTTCATGTTGACGTTCAAATCTTCGATCTCcttggtga ]
consensusID : consensus_6138#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 553 fasta sequence
[TTGCTGTGCTGTAATGGAAGAAAGTGCTATTAACGTAGAAGGAATTGGAAGAACATTTTCTCGACCGGCTGTAATACAATCTGGCCGCCCTGGGGGGAAGGGGAATGTGTCTGTTGCGTGCGTTCGTTGGTCCGTGTGTGCTTGATTCCCGATGCCACTACACCAGGCGGCATATTTAACATTTTAAGTAACAATACTAGAAACAACAGCAGTCAGTTCCTGCGCCCCTCTTCTCCTGCTTCGCGCGTCTAAATGCGGCTCTTGCCACTGCCCGTCTTGATGTCGAACAGCTTCCGGACAAAGTACACCTGCACCGAGGTGGTGAACACGATCACCAGGATCTGCAGCACGGACCACTTCCAGATGTACGCATTGTTGTCCAGAATCAGCGCATAATCGCGGGCCTCGTTGTTGCGCGAGTGGGCCTGATACTGGACATGGCGTTCAGGTTCCGTTCCACCGTCGAAATGGTGCCCGTAAAGTTGTTCATGTTGACGTTCAAATCTTCGATCTCNGGGTGAACTTTTCCCCCTCGTTTAACCTCGGGGGATCT]
[-] EMBL AL932302 [TTGCTGTGCTGTAATGGAAGAAAGTGCTATTAACGTAGAAGGAATTGGAAGAACATTTTCTCGACCGGCTGTAATACAATCTGGCCGCCCTGGGGGGAAGGGGAATGTGTCTGTTGCGTGCGTTCGTTGGTCCGTGTGTGCTTGATTCCCGATGCCACTACACCAGGCGGCATATTTAACATTTTAAGTAACAATACTAGAAACAACAGCAGTCAGTTCCTGCGCCCCTCTTCTCCTGCTTCGCGCGTCTAAATGCGGCTCTTGCCACTGCCCGTCTTGATGTCGAACAGCTTCCGGACAAAGTACACCTGCACCGAGGTGGTGAACACGATCACCAGGATCTGCAGCACGGACCACTTCCAGATGTACGCATTGTTGTCCAGAATCAGCGCATAATCGCGGGCCTCGTTGTTGCGCGAGTGGGCCTGATACTGGACATGGCGTTCAGGTTCCGTTCCACCGTCGAAATGGTGCCCGTAAAGTTGTTCATGTTGACGTTCAAATCTTCGATCTCNGGGTGAACTTTTCCCCCTCGTTTAACCTCGGGGGATCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6138#0 CAAAAATGATTTTTTATTGCTCTTGCACTGAACGTAACAAACAAAAAGAAGCTCCATTTC 60
consensus_6138#1 ------------------------------------------------------------
consensus_6138#0 AAAATGACGGCCGACCAAAATTGACGACTTTTCACTTTTCTTGTACCGCTGACCCAAGCA 120
consensus_6138#1 ------------------------------------------------------------
consensus_6138#0 GTTGAGCAATTTTTGCGCCCTCTGTTGCGATAGCAAATTTAAATGCGCCGTTTTTACGCC 180
consensus_6138#1 ------------------------------------------------------------
consensus_6138#0 CCTTTTCTTTGATCGCTTTATGCTGAAGAAGATGCTAATGGAATGGATGAAAAGCATGGC 240
consensus_6138#1 ------------------------------------------------------------
consensus_6138#0 TTGTTCGAGTGGAGTGCACAACACAAGCAATCGATTGTATTTTCACTTTCACAAACCCTG 300
consensus_6138#1 ------------------------------------------------------------
consensus_6138#0 ACAGATAAGGATGCGAAATCAATCTTTTGCTGTGCTGTAATGGAAGAAAGTGCTATTAAC 360
consensus_6138#1 --------------------------TTGCTGTGCTGTAATGGAAGAAAGTGCTATTAAC 34
**********************************
consensus_6138#0 GTAGAAGGAATTGGAAGAACATTTTCTCGACCGGCTGTAATACAATCTGGCCGCCCTGGG 420
consensus_6138#1 GTAGAAGGAATTGGAAGAACATTTTCTCGACCGGCTGTAATACAATCTGGCCGCCCTGGG 94
************************************************************
consensus_6138#0 GGGGAAGGGGAATGTGTCTGTTGCGTGCGTTCGTTGGTCCGTGTGTGCGTGATTCCGGAT 480
consensus_6138#1 GGG-AAGGGGAATGTGTCTGTTGCGTGCGTTCGTTGGTCCGTGTGTGCTTGATTCCCGAT 153
*** ******************************************** ******* ***
consensus_6138#0 GCCTC-ACACCAGGCGGCATATTTAACATTTTAAGTAACAATACTAGAAA-AACAGCAGT 538
consensus_6138#1 GCCACTACACCAGGCGGCATATTTAACATTTTAAGTAACAATACTAGAAACAACAGCAGT 213
*** * ******************************************** *********
consensus_6138#0 CAGTTCCTGCGCTCCG-TTCTCCTGCTTCGCGCGTCTAAATGCGGCTCTTGCCACTGCCC 597
consensus_6138#1 CAGTTCCTGCGCCCCTCTTCTCCTGCTTCGCGCGTCTAAATGCGGCTCTTGCCACTGCCC 273
************ ** *******************************************
consensus_6138#0 GTCTTGATGTCGAACAGCTTCCGGACAAAGTACACCTGCACCGAGGTGGTGAACACGATC 657
consensus_6138#1 GTCTTGATGTCGAACAGCTTCCGGACAAAGTACACCTGCACCGAGGTGGTGAACACGATC 333
************************************************************
consensus_6138#0 ACCAGGATCTGCAGCACGGACCACTTCCAGATGTACGCATTGTTGTCCAGAATCAGCGCA 717
consensus_6138#1 ACCAGGATCTGCAGCACGGACCACTTCCAGATGTACGCATTGTTGTCCAGAATCAGCGCA 393
************************************************************
consensus_6138#0 TAATCGCGGGCCTCGTTGTTGCGCGAGTGGGCCTGATACTGGAACATGGCGTTCAGGTTC 777
consensus_6138#1 TAATCGCGGGCCTCGTTGTTGCGCGAGTGGGCCTGATACTGGA-CATGGCGTTCAGGTTC 452
******************************************* ****************
consensus_6138#0 CTTTCCACCGTCGAAATGGTGCCCGTAAAGTTGTCCATGTTGACGTTCAAATCTTCGATC 837
consensus_6138#1 CGTTCCACCGTCGAAATGGTGCCCGTAAAGTTGTTCATGTTGACGTTCAAATCTTCGATC 512
* ******************************** *************************
consensus_6138#0 TCTCAGTAGGCCAACAG------------------------ 854
consensus_6138#1 TCNGGGTGAACTTTTCCCCCTCGTTTAACCTCGGGGGATCT 553
** ** *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||