cluster # 6139

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Anopheles gambiae
cluster # 6139 cluster # 6139 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6139#0 length = 1038 sequences # 4

consensus_6139#1 length = 649 sequences # 1

consensusID : consensus_6139#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1038
fasta sequence

                              [CATACGTACACATCACCTACAAATAGCGTGTTCCACACTTGACCAGCTTATCATAGGGGCGAAAAAGAGCGGAATTGTGAANAGGGAGGGTGTGTGTCATA-GCGCATGGCAAAAACGGCTACAAAAGGGCATATTCTAATCACGTGCATGAACGTTATACATACAAAAAAAAGTATAAATATATATATGACTACATCTCAAAGCAAA-AGCAGGACGAAAAATTCAAAACTACCCCCAAACAAGCTAAACAA-ACGAAACAAACAAAGCAAAAAGAAAATCCATGAAAATATATATATTCTACCAAATCGATAAATGTAAATAATCAAACCGTCTCGCGAAAAGGGCGGGATACAGATACGCGAACAGATAACTAATGGTTCCACAAACCTATTCCTATTTCTCTACACCATTCTCTCACTCACTTTCTGTCACTT----TCTCTCTCTCTCTCTGTCTTGGAAGGCTCACGAAAGGCCCGAACCTTTCCCTCCCAAAACGACTAAAAACGTTCGACCAC-TCTTCATTACTCGTTTACGCTTGCCACTTCTTAGATACGAACGAACGGAGCAGGCGAGATCCCAGCACTGACGGGGAAGATGATGATGATCGTTCATAGTCGCGCACGCAATGTCGTAACCAGGATGTCTTATAAGAAAATTCAAATTCCAATCCTACAACACATATACCATCAGCCTTCCTTTCTAATCGTAATTTCTCTACTCGTAAACGTAAACAT-GGATTCTAAAATCAAAACTAAAAACACACTATTTCACACACTCCCTTTTCATCACCCTTTGATCACCTTACTAAGCGAG-AAACATACACGAACACTCACACACACATACAAAAGCAAACAAATACGATGATGATATTGCTAGATAATCCGGATTGAAATGGGAATGATAGAGCAGC-AAAACCAGT-ATACGACCAAAACCACCCCTAT-AAATGGGTACCCGGAAGGAA-TTAAAAAGATGCAACAGCCCCGGGGACGGGTCCCCTCGAGGCACTAGCTTTAGAAGAGAATATGCAATCAGGTTGCAA]

[+] EMBL AL934501             [CATACGTACACATCACCTACAAATAGCGTGTTCCACACTTGACCAGCTTATCATAGGGGCGAAAAAGAGCGGAATTGTGAANAGGGAGGGTGTGTGTCATA GCGCATGGCAAAAACGGCTACAAAAGGGCATATTCTAATCACGTGCATGAACGTTATACATACAAAAAAAAGTATAAATATATATATGACTACATCTCAAAGCAAACAGCAGGACGAAAAATTCAAAACTACCCCCAAACAAGCTAAACAACACGAAACAAACAAAGCAAAAAGAAAATCCATGAAAATATATATATTCTACCAAATCGATAAATGTAAATAATCAAACCGTCTCGCGAAAAGGGCGGGATACAGATACGCGAACAGATAACTAATGGTTCCACAAACCTATTCCTATTTCTCTACACCATTCTCTCACTCACTTTCTGTCACTT    TCTCTCTCTCTCTCTGTCTTGGAAGGCTCACGAAAGGCCCGAACCTTTCCCTCCCAAAACGACTAAAAACG TCGACCACGTCTTCATTACTCGTTTACGCTTGCCACTTCTTAGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL BX621712             [                                                                            GTGAAGAGGGAGGGTGTGTGTCATAGGCGCATGGCAAAAACGGCTACAAAAGGGCATATTCTAATCACGTGCATGAACGTTATACATACAAAAAAAAGTATAAATATATATATGACTACATCTCAAAGCAAA AGCAGGACGAAAAATTCAAAACTACCCCCAAACAAGCTAAACAA ACGAAACAAACAAAGCAAAAAGAAAATCCATGAAAATATATATATTCTACCAAATCGATAAATGTAAATAATCAAACCGTCTCGCGAAAAGGGCGGGATACAGATACGCGAACAGATAACTAATGGTTCCACAAACCTATTCCTATTTCTCTACACCATTCTCTCACTCACTTTCTGTCACTT    TCTCTCTCTCTCTCTGTCTTGGAAGGCTCACGAAAGGCCCGAACCTTTCCCTCCCAAAACGACTAAAAACGTTCGACCAC TCTTCATTACTCGTTTACGCTTGCCACTTCTTAGATACGAACGAACGGAGCAGGCGAGATCCCAGCACTGACGGGGAAGATGATGATGATCGTTCATAGTCGCGCACGCAATGTCGTAACCAGGATGTCTTATAAGAAAATTCAAATTCCAATCCTACAACAC  ATACCCTCAGCCTTCCTTTCTAATCGTAATTTCTCTACTCGTAAACGTAAACAT GGATTCTAAAATCAAAACTAAAAACACACTATTTCACACACTCCCTTTTCATCACCCTTTGATCACCTTAC                                                                                                                                                                                                                                               ]
[+] EMBL BM657834             [                                                                                                                                                                                                                                                                   ccgAACAAAGCAAAAAGAAAATCCATGAACATATATATATTCTACCAAATCGATAAATGTAAATAATCAAACCGTCTCGCGAAAAGGGCGGGATACAGATACGCGAACAGATAACTAATGGTTCCACAAACCTATTCCTATTTCTCTACACCATTCTCTCACTCACTTTCTGTCACTTTCTCTCTCTCTCTCTCTCTGTCTTGGAAGGCTCACGAAAGGCCCGAACATTTCCCTCCCAAAACGACTAAAAACGTTCGACCAC TCTTCATTACTCGTTTACGCTTGCCACTTCTTAGATACGAACGAACGGAGCAGGCGAGATCCCAGCACTGACGGGGAAGATGATGATGATCGTTCATAGTCGCGCACGCAATGTCGTAACCAGGATGTCTTATAAGAAAATTAAAATTCCAATCCTACAACACATATACCATCAGCCTTCCTTTCTAATCGTAATTTCTCTACTCGTAAACGTAAACATGGGATTCTAAAATCAAAACTAAAAACACACTATTTCACACACTCCCTTTTCATCACCCTTTGATCACCTTACTAAGCGAG AAACATACACGAACACTCACACACACATACAAAAGCAAACAAATACGATGATGATATTGCTAGATAATCCGGATTGAAATGGGAATGATAGAGCAGC AAAACCAGT ATACGACCAAAACCACCCCTAT AAATGGGTACCCGGAAGGAA TTAAAAAGATGCAACAGCCCCGG                                                       ]
[+] EMBL BM604561             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ccgCGTTCGACCAC TCTTCATTACTCGTTTACGCTTGCCACTTCTTAGATACGAACGAACGGAGCAGGCGAGATCCCAGCACTGACGGGGAAGATGATGATGATCGTTCATAGTCGCGCACGCAATGTCGTAACCAGGATGTCTTATAAGAAAATTCAAATTCCAATCCTACAACACATATACCATCAGCCTTCCTTTCTAATCGTAATTTTTCTACTCGTAAACGTAAACAT GGATTCTAAAATCAAAACTAAAAACACACTATTTCACACACTCCCTTTTCATCACCCTTTGATCACCTTACTAAGCGAGAAAACACAAACAAACACTCACACACACATAC AAAGCAAACAAATACGATGATGATATTGTTAGATAAT CGGATTGAAATGGTAATGATAGAGCAGCAAAAACAAGTAATACAACAAAAACAAACCCTATAAAATGTGTACACGGAAGGAATTTAGATAGATGCAACAGCCCGGGGGACGGGTCCCCTCGAGGCACTAGCTTTAGAAGAGAATATGCAATCAGGTTGCAA]




>consensus_6139#0
CATACGTACACATCACCTACAAATAGCGTGTTCCACACTTGACCAGCTTATCATAGGGGC
GAAAAAGAGCGGAATTGTGAANAGGGAGGGTGTGTGTCATAGCGCATGGCAAAAACGGCT
ACAAAAGGGCATATTCTAATCACGTGCATGAACGTTATACATACAAAAAAAAGTATAAAT
ATATATATGACTACATCTCAAAGCAAAAGCAGGACGAAAAATTCAAAACTACCCCCAAAC
AAGCTAAACAAACGAAACAAACAAAGCAAAAAGAAAATCCATGAAAATATATATATTCTA
CCAAATCGATAAATGTAAATAATCAAACCGTCTCGCGAAAAGGGCGGGATACAGATACGC
GAACAGATAACTAATGGTTCCACAAACCTATTCCTATTTCTCTACACCATTCTCTCACTC
ACTTTCTGTCACTTTCTCTCTCTCTCTCTGTCTTGGAAGGCTCACGAAAGGCCCGAACCT
TTCCCTCCCAAAACGACTAAAAACGTTCGACCACTCTTCATTACTCGTTTACGCTTGCCA
CTTCTTAGATACGAACGAACGGAGCAGGCGAGATCCCAGCACTGACGGGGAAGATGATGA
TGATCGTTCATAGTCGCGCACGCAATGTCGTAACCAGGATGTCTTATAAGAAAATTCAAA
TTCCAATCCTACAACACATATACCATCAGCCTTCCTTTCTAATCGTAATTTCTCTACTCG
TAAACGTAAACATGGATTCTAAAATCAAAACTAAAAACACACTATTTCACACACTCCCTT
TTCATCACCCTTTGATCACCTTACTAAGCGAGAAACATACACGAACACTCACACACACAT
ACAAAAGCAAACAAATACGATGATGATATTGCTAGATAATCCGGATTGAAATGGGAATGA
TAGAGCAGCAAAACCAGTATACGACCAAAACCACCCCTATAAATGGGTACCCGGAAGGAA
TTAAAAAGATGCAACAGCCCCGGGGACGGGTCCCCTCGAGGCACTAGCTTTAGAAGAGAA
TATGCAATCAGGTTGCAA

consensusID : consensus_6139#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 649
fasta sequence

                              [CCGCAAGAACGAAGACACAACGGTATACGTTTTTCGTTTGACTTTCTAAGTAACTGTTTCGGAGTTGAACAAAGGTTTTTTTTTTGTTTTCTTCCTTAATTTTTAAGGTACGTTTCTACTCCTCTCCGACTATTTGCACTTTATGACCGATTTTGCGGTGTCTCGAAGCACACACACAAACATAAACATAATACATCCACATACGTACACATCACTTACAAATAGCGTGTTCCACACTTGACCAGTTATCATAGGGGCGAAAAAGAGGGAATTGTGAAGAGGGAGGGTGTGTGTAATAGGCGCATGGCAAAAAGGGCATATTCTAATCACGTGCATGAACGTTATACATACAAACAAAAAAAAGTATAAATATATATATGAATACATCTCAAAGCAAAAGCAGGACGAAAAATTCAAAACTACCCCCAAACAAGCTAAACAAACGAAACAAACAAAGCAAAAAGAAAATCCATGAAAATATATATATTCTACCAAATCGATAAATGTAAATAATCAAACCGTCTCGCGAAAAGGGCGGGATACAGATACGCGAACAGATAACTATATAGGTTCCACAAACCTATTCCTATTTCTCTACACCATTCTCTCACTCACTTTCTGGCACTTTCTCTCTCTCTCTCTGTCTTGG]

[+] EMBL BM652802             [CCGCAAGAACGAAGACACAACGGTATACGTTTTTCGTTTGACTTTCTAAGTAACTGTTTCGGAGTTGAACAAAGGTTTTTTTTTTGTTTTCTTCCTTAATTTTTAAGGTACGTTTCTACTCCTCTCCGACTATTTGCACTTTATGACCGATTTTGCGGTGTCTCGAAGCACACACACAAACATAAACATAATACATCCACATACGTACACATCACTTACAAATAGCGTGTTCCACACTTGACCAGTTATCATAGGGGCGAAAAAGAGGGAATTGTGAAGAGGGAGGGTGTGTGTAATAGGCGCATGGCAAAAAGGGCATATTCTAATCACGTGCATGAACGTTATACATACAAACAAAAAAAAGTATAAATATATATATGAATACATCTCAAAGCAAAAGCAGGACGAAAAATTCAAAACTACCCCCAAACAAGCTAAACAAACGAAACAAACAAAGCAAAAAGAAAATCCATGAAAATATATATATTCTACCAAATCGATAAATGTAAATAATCAAACCGTCTCGCGAAAAGGGCGGGATACAGATACGCGAACAGATAACTATATAGGTTCCACAAACCTATTCCTATTTCTCTACACCATTCTCTCACTCACTTTCTGGCACTTTCTCTCTCTCTCTCTGTCTTGG]




>consensus_6139#1
CCGCAAGAACGAAGACACAACGGTATACGTTTTTCGTTTGACTTTCTAAGTAACTGTTTC
GGAGTTGAACAAAGGTTTTTTTTTTGTTTTCTTCCTTAATTTTTAAGGTACGTTTCTACT
CCTCTCCGACTATTTGCACTTTATGACCGATTTTGCGGTGTCTCGAAGCACACACACAAA
CATAAACATAATACATCCACATACGTACACATCACTTACAAATAGCGTGTTCCACACTTG
ACCAGTTATCATAGGGGCGAAAAAGAGGGAATTGTGAAGAGGGAGGGTGTGTGTAATAGG
CGCATGGCAAAAAGGGCATATTCTAATCACGTGCATGAACGTTATACATACAAACAAAAA
AAAGTATAAATATATATATGAATACATCTCAAAGCAAAAGCAGGACGAAAAATTCAAAAC
TACCCCCAAACAAGCTAAACAAACGAAACAAACAAAGCAAAAAGAAAATCCATGAAAATA
TATATATTCTACCAAATCGATAAATGTAAATAATCAAACCGTCTCGCGAAAAGGGCGGGA
TACAGATACGCGAACAGATAACTATATAGGTTCCACAAACCTATTCCTATTTCTCTACAC
CATTCTCTCACTCACTTTCTGGCACTTTCTCTCTCTCTCTCTGTCTTGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6139#0      ------------------------------------------------------------
consensus_6139#1      CCGCAAGAACGAAGACACAACGGTATACGTTTTTCGTTTGACTTTCTAAGTAACTGTTTC 60
                                                                                  

consensus_6139#0      ------------------------------------------------------------
consensus_6139#1      GGAGTTGAACAAAGGTTTTTTTTTTGTTTTCTTCCTTAATTTTTAAGGTACGTTTCTACT 120
                                                                                  

consensus_6139#0      ------------------------------------------------------------
consensus_6139#1      CCTCTCCGACTATTTGCACTTTATGACCGATTTTGCGGTGTCTCGAAGCACACACACAAA 180
                                                                                  

consensus_6139#0      -------------------CATACGTACACATCACCTACAAATAGCGTGTTCCACACTTG 41
consensus_6139#1      CATAAACATAATACATCCACATACGTACACATCACTTACAAATAGCGTGTTCCACACTTG 240
                                         **************** ************************

consensus_6139#0      ACCAGCTTATCATAGGGGCGAAAAAGAGCGGAATTGTGAANAGGGAGGGTGTGTGTCATA 101
consensus_6139#1      ACCAG-TTATCATAGGGGCGAAAAAGAG-GGAATTGTGAAGAGGGAGGGTGTGTGTAATA 298
                      ***** ********************** *********** *************** ***

consensus_6139#0      G-CGCATGGCAAAAACGGCTACAAAAGGGCATATTCTAATCACGTGCATGAACGTTATAC 160
consensus_6139#1      GGCGCATGGCAAAAA-----------GGGCATATTCTAATCACGTGCATGAACGTTATAC 347
                      * *************           **********************************

consensus_6139#0      ATACAAA----AAAAAGTATAAATATATATATGACTACATCTCAAAGCAAAAGCAGGACG 216
consensus_6139#1      ATACAAACAAAAAAAAGTATAAATATATATATGAATACATCTCAAAGCAAAAGCAGGACG 407
                      *******    *********************** *************************

consensus_6139#0      AAAAATTCAAAACTACCCCCAAACAAGCTAAACAAACGAAACAAACAAAGCAAAAAGAAA 276
consensus_6139#1      AAAAATTCAAAACTACCCCCAAACAAGCTAAACAAACGAAACAAACAAAGCAAAAAGAAA 467
                      ************************************************************

consensus_6139#0      ATCCATGAAAATATATATATTCTACCAAATCGATAAATGTAAATAATCAAACCGTCTCGC 336
consensus_6139#1      ATCCATGAAAATATATATATTCTACCAAATCGATAAATGTAAATAATCAAACCGTCTCGC 527
                      ************************************************************

consensus_6139#0      GAAAAGGGCGGGATACAGATACGCGAACAGATAACTA-AT-GGTTCCACAAACCTATTCC 394
consensus_6139#1      GAAAAGGGCGGGATACAGATACGCGAACAGATAACTATATAGGTTCCACAAACCTATTCC 587
                      ************************************* ** *******************

consensus_6139#0      TATTTCTCTACACCATTCTCTCACTCACTTTCTGTCACTTTCTCTCTCTCTCTCTGTCTT 454
consensus_6139#1      TATTTCTCTACACCATTCTCTCACTCACTTTCTGGCACTTTCTCTCTCTCTCTCTGTCTT 647
                      ********************************** *************************

consensus_6139#0      GGAAGGCTCACGAAAGGCCCGAACCTTTCCCTCCCAAAACGACTAAAAACGTTCGACCAC 514
consensus_6139#1      GG---------------------------------------------------------- 649
                      **                                                          

consensus_6139#0      TCTTCATTACTCGTTTACGCTTGCCACTTCTTAGATACGAACGAACGGAGCAGGCGAGAT 574
consensus_6139#1      ------------------------------------------------------------
                                                                                  

consensus_6139#0      CCCAGCACTGACGGGGAAGATGATGATGATCGTTCATAGTCGCGCACGCAATGTCGTAAC 634
consensus_6139#1      ------------------------------------------------------------
                                                                                  

consensus_6139#0      CAGGATGTCTTATAAGAAAATTCAAATTCCAATCCTACAACACATATACCATCAGCCTTC 694
consensus_6139#1      ------------------------------------------------------------
                                                                                  

consensus_6139#0      CTTTCTAATCGTAATTTCTCTACTCGTAAACGTAAACATGGATTCTAAAATCAAAACTAA 754
consensus_6139#1      ------------------------------------------------------------
                                                                                  

consensus_6139#0      AAACACACTATTTCACACACTCCCTTTTCATCACCCTTTGATCACCTTACTAAGCGAGAA 814
consensus_6139#1      ------------------------------------------------------------
                                                                                  

consensus_6139#0      ACATACACGAACACTCACACACACATACAAAAGCAAACAAATACGATGATGATATTGCTA 874
consensus_6139#1      ------------------------------------------------------------
                                                                                  

consensus_6139#0      GATAATCCGGATTGAAATGGGAATGATAGAGCAGCAAAACCAGTATACGACCAAAACCAC 934
consensus_6139#1      ------------------------------------------------------------
                                                                                  

consensus_6139#0      CCCTATAAATGGGTACCCGGAAGGAATTAAAAAGATGCAACAGCCCCGGGGACGGGTCCC 994
consensus_6139#1      ------------------------------------------------------------
                                                                                  

consensus_6139#0      CTCGAGGCACTAGCTTTAGAAGAGAATATGCAATCAGGTTGCAA 1038
consensus_6139#1      --------------------------------------------