cluster # 6141

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Anopheles gambiae
cluster # 6141 cluster # 6141 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6141#0 length = 653 sequences # 4

consensus_6141#1 length = 347 sequences # 1

consensusID : consensus_6141#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 653
fasta sequence

                              [CCGGGTGTTTTTGCATTCGTGTCATGAAGTGTTCACTCGTGGTATTATTGTTGGGGGTCGGTTGTCTAGGAGCTTTCGGGGATGCAAGACAAGATGAATTTCGGAATGGACCGTTGCTCGATAGATTGGTGCGTTCTCGAAGGCAAAGCGGGGGAGTAAACTATGGCTTTCCCACGTTTCCCGACTTTACCAAACAGGGTCAGTTTGCTCATTTTGGACAACAAGCGCACGGAGGAGGATTATTCTCTCGTAGTGACTTTTCCGATTTTATGCCAGATCCTTCACAATTCAAGGGCAACCAAGGATGGACTACAAGAAGCTGTGTATATGATGAGAAAGGAAAAGCAAAGTGCGTAGAGCAACATGGTGATAAGCCCAAGCACTAGACGTGAAAGGAGATAACCTAGGGTTTCCCGAACGTTTACCCGAATATGTTTTTTCAATACCTGTTAGTTTAAATATTATTTTCGAATTTCTTCGTTCCTAGGATTGATTTTTGAAATAATATTTCA-ATTATTTTTGTAATACACCAGATAGTCCTAACAACGAACCAATACGCTATACTTTCGTGATTTTTCGGATGACATTGTAGGCGGTGAATAGTTCAATGATGAAGAAAATAAACATTCGTAGAAAGTTTGTTAGCAATTGTT]

[+] EMBL BM648382             [CCGGGTGTTTTTGCATTCGTGTCATGAAGTGTTCACTCGTGGTATTATTGTTGGGGGTCGGTTGTCTAGGAGCTTTCGGGGATGCAAGACAAGATGAATTTCGGAATGGACCGTTGCTCGATAGATTGGTGCGTTCTCGAAGGCAAAGCGGGGGAGTAAACTATGGCTTTCCCACGTTTCCCGACTTTACCAAACAAGGTCAGTTTGCTCATTTTGGACAACAAGCGCACGGAGGAGGATTATTCTCCCGTAGTGACTTTTCCGATTTTATGCCAGATCCTTCACAATTCAAGGGCAACCAAGGATGGACTACAAGAAGCTGTGTATATGATGAGAAAGGAAAAGCAAAGTGCGTAGAGCAACATGGTGATAAGCCCAAGCACTAGACGTGAAAGGAGATAACCTAGGG  AGAAATACGTTTACCCGAATATGTTTTTTCAATACCTGTTAGTTTAAATAATGTTTTCGAATTTCTTCGTTCCTAGGATTGATTTTTGAGATAATATTTCATTTTTTTTTTGTAATACACCAGATAGTCCTAACAACGAACCATTACGCTATACTCTCGTGATTTTTCGGATGACATTGTAGGCGGTGA                                                      ]
[+] EMBL BM655167             [ ccGGTGTTTTTGCATTCGTGTCATGAAGTGTTCACTCGTGGTATTATTGTTGGGGGTCGGTTGTCTAGGAGCTTTCGGGGATGCAAGACAAGATGAATTTCGGAATGGACCGTTGCTCGATAGATTGGTGCGTTCTCGAAGGCAAAGCGGGGGAGTAAACTATGGCTTTCCCACGTTTCCCGACTTTACCAAACAGGGTCAGTTTGCTCATTTTGGACAACAAGGGCACGGGGGAGGATTATTCTCTCGTAGTGACTTTTCCGATTTTATGCCAGATCCTTCACAGTTCAAGGGCAACCAAGGATGGACTACAAGAAGCTGTGTATATGATGAGAAAGGAAAAGCAAAGTGCGTAGAGCAACATGGTGATAAGCCCAAGCACTAGACGTGAAAGGAGATAACCTAGGGTTTCCCGAACGTTTACCCGAATATGTTTTTTCAATACCTGTTAGTTTAAATATTATTTTCGAATTTCTTCGTTCCTAGGATTGATTTTTGAAATAATATTTCA ATTATTTTTGTAATACACCAGATAGTCCTAACAACGAACCAATACGCTATACTTTCGTGATTTTTCGGATGACATTGTAGGCGGTGAATAGTTCAATGATGAAGAAAATAAACATTCGTAGAAAGTTTGTTAGCAATTGTT]
[+] EMBL BM593811             [                                                                    ccgGCTTTCGGGGATGCAAGACAAGATGAATTTCGGAATGGACCGTTGCTCGATAGATTGGTGCGTTCTCGAAGGCAAAGCGGGGGAGTAAACTATGGCTTTCCCACGTTTCCCGACTTTACCAAACAGGGTCAGTTTGCTCATTTTGGACAACAAGGGCACGGGGGAGGATTATTCTCTCGTAGTGACTTTTCCGATTTTATGCCAGATCCTTCACAGTTCAAGGGCAACCAAGGATGGACTACAAGAAGCTGTGTATATGATGAGAAAGGAAAAGCAAAGTGCGTAGAGCAACATGGTGATAAGCCCAAGCACTAGACGTGAAAGGAGATAACCTAGGGTTTCCCGAACGTTTACCCGAATATGTTTTTTCAATACCTGTTAGTTTAAATATTATTTTCGAATTTCTTCGTTCCTAGGATTGATTTTTGAAATAATATTTCA ATTATTTTTGTAATACACCAGATAGTCCTAACAACGAACCAATACGCTATACTTTCGTGATTTTTCGGATGACATTGTAGGCGGTGAAT                                                    ]
[+] EMBL AF283267             [                                                                                GATGCAAGACAAGATGAATTTCGGAATGGACCGTTGCTCGATAGATTGGTGCGTTCTCGAAGGCAAAGCGGGGGAGTAACCTATGGCTTTCCCACGTTTCCCGACTTTACTAAACAGGGTCAGTTTGCCCATTTTGGACAACAAGCGCACGGAGGAGGATTATTCTCTCGTAGTGACTTTTCCGATTTTATGCCAGATCCCTCACAATTCAAGGGC                                                                                                                                                                                                                                                                                                                                                                      ]




>consensus_6141#0
CCGGGTGTTTTTGCATTCGTGTCATGAAGTGTTCACTCGTGGTATTATTGTTGGGGGTCG
GTTGTCTAGGAGCTTTCGGGGATGCAAGACAAGATGAATTTCGGAATGGACCGTTGCTCG
ATAGATTGGTGCGTTCTCGAAGGCAAAGCGGGGGAGTAAACTATGGCTTTCCCACGTTTC
CCGACTTTACCAAACAGGGTCAGTTTGCTCATTTTGGACAACAAGCGCACGGAGGAGGAT
TATTCTCTCGTAGTGACTTTTCCGATTTTATGCCAGATCCTTCACAATTCAAGGGCAACC
AAGGATGGACTACAAGAAGCTGTGTATATGATGAGAAAGGAAAAGCAAAGTGCGTAGAGC
AACATGGTGATAAGCCCAAGCACTAGACGTGAAAGGAGATAACCTAGGGTTTCCCGAACG
TTTACCCGAATATGTTTTTTCAATACCTGTTAGTTTAAATATTATTTTCGAATTTCTTCG
TTCCTAGGATTGATTTTTGAAATAATATTTCAATTATTTTTGTAATACACCAGATAGTCC
TAACAACGAACCAATACGCTATACTTTCGTGATTTTTCGGATGACATTGTAGGCGGTGAA
TAGTTCAATGATGAAGAAAATAAACATTCGTAGAAAGTTTGTTAGCAATTGTT

consensusID : consensus_6141#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 347
fasta sequence

                              [GCAAGACAAGGTAACGAACGGAACGACGAAAGAGTGCAATGTGTAAAATGAATCTCATAAATCGGCTTTCACACAGATGAATTTCGGAATGGACCGTTGCTCGATAGATTGGTGCGTTCTCGAAGGCAAAGCGGGGGAGTAAACTATGGCTTTCCCACGTTTCCCGACTTTACTAAACAGGGTCAGTTTGCTCATTTTGGACAACAAGCGCACGGAGGAGGATTATTTTCTCGTAGTGACTTTTCCGATTTTATGCCAGGTAATGGGAATTCAGAATATGTTCACAATACACTTACGTCAACTAATACACCATTTGGTGACCTCAGATCCTTCACAATTCAAGGGCA]

[-] EMBL AF283264             [GCAAGACAAGGTAACGAACGGAACGACGAAAGAGTGCAATGTGTAAAATGAATCTCATAAATCGGCTTTCACACAGATGAATTTCGGAATGGACCGTTGCTCGATAGATTGGTGCGTTCTCGAAGGCAAAGCGGGGGAGTAAACTATGGCTTTCCCACGTTTCCCGACTTTACTAAACAGGGTCAGTTTGCTCATTTTGGACAACAAGCGCACGGAGGAGGATTATTTTCTCGTAGTGACTTTTCCGATTTTATGCCAGGTAATGGGAATTCAGAATATGTTCACAATACACTTACGTCAACTAATACACCATTTGGTGACCTCAGATCCTTCACAATTCAAGGGCA]




>consensus_6141#1
GCAAGACAAGGTAACGAACGGAACGACGAAAGAGTGCAATGTGTAAAATGAATCTCATAA
ATCGGCTTTCACACAGATGAATTTCGGAATGGACCGTTGCTCGATAGATTGGTGCGTTCT
CGAAGGCAAAGCGGGGGAGTAAACTATGGCTTTCCCACGTTTCCCGACTTTACTAAACAG
GGTCAGTTTGCTCATTTTGGACAACAAGCGCACGGAGGAGGATTATTTTCTCGTAGTGAC
TTTTCCGATTTTATGCCAGGTAATGGGAATTCAGAATATGTTCACAATACACTTACGTCA
ACTAATACACCATTTGGTGACCTCAGATCCTTCACAATTCAAGGGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6141#0      CCGGGTGTTTTTGCATTCGTGTCATGAAGTGTTCACTCGTGGTATTATTGTTGGGGGTCG 60
consensus_6141#1      ---------------------GCAAGACAAGGTAACGAACGGAACGACGAAAGAGTGCAA 39
                                            ** **   * * **    ** *  *     * * *   

consensus_6141#0      GTTGTCTAGGAGCTTTCGGGGATGCAAG---ACA-AGATGAATTTCGGAATGGACCGTTG 116
consensus_6141#1      TGTGTAAAATGAATCTCATAAATCGGCTTTCACACAGATGAATTTCGGAATGGACCGTTG 99
                        ***  *     * **    **        *** *************************

consensus_6141#0      CTCGATAGATTGGTGCGTTCTCGAAGGCAAAGCGGGGGAGTAAACTATGGCTTTCCCACG 176
consensus_6141#1      CTCGATAGATTGGTGCGTTCTCGAAGGCAAAGCGGGGGAGTAAACTATGGCTTTCCCACG 159
                      ************************************************************

consensus_6141#0      TTTCCCGACTTTACCAAACAGGGTCAGTTTGCTCATTTTGGACAACAAGCGCACGGAGGA 236
consensus_6141#1      TTTCCCGACTTTACTAAACAGGGTCAGTTTGCTCATTTTGGACAACAAGCGCACGGAGGA 219
                      ************** *********************************************

consensus_6141#0      GGATTATTCTCTCGTAGTGACTTTTCCGATTTTATGCCAGATCCTTCACAATTCAAGGGC 296
consensus_6141#1      GGATTATTTTCTCGTAGTGACTTTTCCGATTTTATGCCAGGTAATG-GGAATTCAGAATA 278
                      ******** ******************************* *  *    ******     

consensus_6141#0      AACCAAGGATGGACTACAAGAAGCTGTGTATATGATGAGAAAGGAAAAGCAAAGTGCGTA 356
consensus_6141#1      TGTTCACAATACACTTACGTCAACTA-ATACACCATTTG---GTGACCTCAGATCCTTCA 334
                           *  **  ***      * **   ** *  **  *   *  *   ** *      *

consensus_6141#0      GAGCAACATGGTGATAAGCCCAAGCACTAGACGTGAAAGGAGATAACCTAGGGTTTCCCG 416
consensus_6141#1      CAATTCAAGGGCA----------------------------------------------- 347
                       *     * **                                                 

consensus_6141#0      AACGTTTACCCGAATATGTTTTTTCAATACCTGTTAGTTTAAATATTATTTTCGAATTTC 476
consensus_6141#1      ------------------------------------------------------------
                                                                                  

consensus_6141#0      TTCGTTCCTAGGATTGATTTTTGAAATAATATTTCAATTATTTTTGTAATACACCAGATA 536
consensus_6141#1      ------------------------------------------------------------
                                                                                  

consensus_6141#0      GTCCTAACAACGAACCAATACGCTATACTTTCGTGATTTTTCGGATGACATTGTAGGCGG 596
consensus_6141#1      ------------------------------------------------------------
                                                                                  

consensus_6141#0      TGAATAGTTCAATGATGAAGAAAATAAACATTCGTAGAAAGTTTGTTAGCAATTGTT 653
consensus_6141#1      ---------------------------------------------------------