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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6151#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1350 fasta sequence
[AAAGACCTGGTTTCTGTTGGCGAAGCAACACAAAACAGAGTTCATGATAACAAGAGAGCAGATTGAGCTGTTTTCGGACACAGACGAAATTGTTGATGCGTCAATTGGAATTGCTGCATCAAAACAACAAGTACAGCAAGAACATGCCCAACGAGATAACGAGTTCCTGTTGCTGAGCTTGTGATATTTATGCTTCAAGAAGATTCTAAGTACAATCTCCTTTCTCGGCACCAATTTCACAGAAACACTGCAACAGGTTCCAGCGAAACAGTTGGCCCAGCAGCAACGTAAAGCCCTTGGTCAGCATGCAGAGAAGCAGTCCGATCTTGTCTTCATCTTTCTCCCCGTAGTGGAGCAACACCTCACCGAACACTCCATCATAACAAAA-CCCCCCGAAGAGTTGCTCAAATCGTACGACACACTCCGTACGCCCCTGCTCGAAGGCTGCAACGATGCGGAAGGCATACTCGGTCTGTACATCC-TACGACGCAAGACACGCGGCGAGGACATACGCCATCTCCCGGGTCGACTAGCCTCCAAGCTGTTCCGTCACCTGGACACTACGGAGCTTGCCGAAGTAACAGACAAGATACGGAAGTTCTATTTCGCCAACGAACCTCCATCCGCATGGTCCACCGATCAGATCAAGCACCTGCTGACGGACGTGATCTTCATGATGGACTCCGCGATCAATGCCGAATGGCTTGCCAAGTATCAGCCGAACTTGCGGCACTATCACTACCGCTTCACGTACGACGGTCGGTACAGTTTGCT-GAAGCGCCTGTTCCTGAGTGCGTCCGTGTCCGGGGCCTGCCATGGGGATGACTTGATGTACATGTTCAAACCAAAGTTCTTGCCTACCTTTGCACCTGCCAGTGATGAGTGCCGCGTGCGGGATAACATTGTTGCCCTGTGGACCAGCTTTGCCAGACATGGGGATCCTTCAGCTGGTTCGCGTGAAGTCGTCGCTGTACCGTGGCGTCCGGT-GGGAAAGATTTCTCGCGAAGGTTCGTCTGACTTTCGGCTAGACTGTCTGGAGATCAATGTACAGCCGGCTATGGTGAGTGACCGTGCCGGGAGCGTGCTTACTTCTGGAGAGATCTGCTCGAAGCACACCGAAAGGGTCATCTATGAAAGCTCAGTGTGTTCCAGTGTGTGATAACCGTATTATGCGTTTAGTTTGTAAGTGGTTTCAAAGGCTACTCATAGGTAGTAGTGCTCCGAGTTTAAGGATGCATGACGCGAAAGCCAAGCTTTCACAAGAGTTGTTTATTCCCAAAAACAAACAATGCTCCCACTGCCTTGGAGGTTTTGGTGCCTCAAAATATATCAATTTTATTGCTTTGGGTA]
[+] EMBL CNS08DND [AAAGACCTGGTTTCTGTTGGCGAAGCAACACAAAACAGAGTTCATGATAACAAGAGAGCAGATTGAGCTGTTTTCGGACACAGACGAAATTGTTGATGCGTCAATTGGAATTGCTGCATCAAAACAACAAGTACAGCAAGAACATGCCCAACGAGATAACGAGTTCCTGTTGCTGAGCTTGTGATATTTATGCTTCAAGAAGATTCTAAGTACAATCTCCTTTCTCGGCACCAATTTCACAGAAACACTGCAACAGGTTCCAGCGAAACAGTTGGCCCAGCAGCAACGTAAAGCCCTTGGTCAGCATGCAGAGAAGCAGTCCGATCTTGTCTTCATCTTTCTCCCCGTAGTGGAGCAACACCTCACCGAACACTCCATCATAACAAAA CCCCCCGAAGAGTTGCTCAAATCGTACGACACACTCCGTACGCCCCTGCTCGAAGGCTGCAACGCTGCGGAAGGCATACTCGGTCTGTACATCCATACGACGCAAGACACGCGGCGAGGACATACGCCATCTCCCGGGTCGACTAGCCTCCAAGCTGTTCCGTCACCTGGACACTACGGAGCTTGCCGTTTTAACAGACAAGATACGGAAGTACTATATCGCCAACGAACCTCCATCCGCATGGTCCACCGATCAGATCAAGCACCTG ]
[+] EMBL CNS08YFH [ TGGCGAA CAACACAAAACAGAGTTCATGATAACAAGAGAGCAGATTGAGCTGTTTTCGGACACAGACGAAATTGTTGATGCGTCAATTGGAATTGCTGCATCAAAACAACAAGTACAGCAAGAACATGCCCAACGAGATAACGAGTTCCTGTTGCTGAGCTTGTGATATTTATGCTTCAAGAAGATTCTAAGTACAATCTCCTTTCTCGGCACCAATTTCACAGAAACACTGCAACAGGTTCCAGCGAAACAGTTGGCCCAGCAGCAACGTAAAGCCCTTGGTCAGCATGCAGAGAAGCAGTCCGATCTTGTCTTCATCTTTCTCCCCGTAGTGGAGCAACACCTCACCGAACACTCCATCATAACAAAATTCCCCCGAAGAGTTGCTCAAATCGTACGACACACTCCGTACGCCCCTGCTCGAAGGCTGCAACGATGCGGAAGGCATACTCGGTCTGTACATCC TACGACGCAAGACACGCGGCGAGGACATACGCCATCTCCCGGGTCGACTAGCCTCCAAGCTGTTCCGTCACCTGGACACTACGGAGCTTGCCGAAGTAACAGACAAGATACGGAAGTTCTATTTCGCCAACGAACCTCCATCCGCATGGTCCACCGATCAGATCAAGCACCTGCTGACGGACGTGATCTTCATGATGGACTCCGCGATCAATGCCGAATGGCTTGCCAAGTATCAGCCGAACTTGCGGCACTATCACTACCGCTTCACGTACGACGGTCGGTACAGTTTGCT GAAGCGCCTGTTCCTGAGTGCGTCCGTATCCGGGGCCTGCCATGGGGATGACTTGATGTACATGTTCAAACCAAAGTTCTTGCCTACCTTTGCACCTGCCAGTGATGAGTGCCGCGTGCGGGATAACATTGTTGCCCTGTGGACCAGCTTTGCCAGACATGGGGATCCTTCAGCTGGTTCGCGTGAAGTCGTCGCTGTACCGTGGCGTCCGGTGGGGAAAGATTTCTCGCGA ]
[-] EMBL CNS08YFI [ CAAATCGTACAACACACTCCGTACGCCCCTGCTCGAAGGCTGCAACGATGCGGAAGGCATACTCGGTCTGTACATCC TACGACGCAAGACACGCGGCGAGGACATACGCCATCTCCCGGGTCGACTAGCCTCCAAGCTGTTCCGTTTCCTGGACACTACGGAGCTTGCCGAAGTAACAGACAAGATACGGAAGTTCTATTTCGCCAACGAACCTCCATCCGCATGGTCCACCGATCAGATCAAGCACCTGCTGACGGACGTGATCTTCATGATGGACTCCGCGATAAATGCCGAATGGCTTGCCAAGTTTCAGCCGAACTTGCGGCACTATAACTACCGCTTAACGTACGACGGTCGGTACAGTTTGCT GAAGCGCCTGTTCCTGAGTGCGTCCGTGTCCGGGGCCTGCCATGGGGATGACTTGATGTACATGTTCAAACCAAAGTTCTTGCCTACCTTTGCACCTGCCAGTGATGAGTGCCGCGTGCGGGATAACATTGTTGCCCTGTGGACCAGCTTTGCCAGACATGGGGATCCTTCAGCTGGTTCGCGTGAAGTCGAAGCTGTACCGTGGCGTCCGGT GGGAAAGATTTCTCGCGAAGGTTCGTCTGACTTTCGGCTAGACTGTCTGGAGATCAATGTACAGCCGGCTATGGTGAGTGACCGTGCCGGGAGCGTGCTTACTTCTGGAGAGATCTGCTCGAAGCACACCGAAAGGGTCATCTATGAAAGCTCAGTGTGTTCCAGTGTGTGATAACCGTATTATGCGTTTAGTTTGTAAGTGGTTTCAAAGGCTACTCATAGGTAGTAGTGCTCCGAGTTTAAGGATGCATGACGCGAAAGCCAAGCTTTCACAAGAGTTGTTTATTCCCAAAAACAAACAATGCTCCCACTGCCTTGGAGGTTTTGGTGCCTCAAAATATATCAATTT ]
[-] EMBL CNS08DNE [ AGCCGCACTTGCGGCACTATCACTTCCGCTTTACGTACGACGGTCGGTACAGTTTGCTAAAAAAACCTGTTCCTGAGTGCGTCCGTGTCCGGGGCCTGCCATGGGGATGACTTGATGTACATGTTCAAACCAAAGTTCTTGCCTACCTTTGCACCTGCCAGTGATAAGTGCCGCGTGCGGCATAACATTGTTGCCCTGTGGACCAGCTTTGCCAGACATGGGGATCCTTCAGCTGGTTCGCGTGAAGTCGTCGCTGTACCGTGGCGTCCGGT GGGAAAGATTTCTCGCGAAGGTTCGTCTGACTTTCGGCTAGACTGTCTGGAGATCAATGTACAGCCGGCTATGGTGAGTGACCGTGCCGGGAGCGTGCTTACTTCTGGAGAGATCTGCTCGAAGCACACCGAAAGGGTCATCTATGAAAGCTCAGTGTGTTCCAGTGTGTGATAACCGTTTTATGCGTTTAGTTTGTAAGTGGTTTCAAAGGCTACTCATAGGTAGTAGTGCTCCGAGTTTAAGGATGCATGACGCGAAAGCCAAGCTTTCACAAGAGTTGTTTATTCCCAAAAACAAACAATGCTCCCACTGCCTTGGAGGTTTTGGTGCCTCAAAATATATCAATTTTATTGCTTTGGGTA]
consensusID : consensus_6151#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 723 fasta sequence
[TTCCTGTACCTCCCAGAGGCTGATGTTGAGGGAAACGCGGGCCTAAAAGATCAGCTGATGGCGCTCCGGTGGGTCCATGAAAACATTGCCAGCTTCGGTGGCGATCCCCACAACGTGACGCTGTTCGGTGAAAGTGCCGGCAGCTTCTCTACATATCTGCACATGCTCTCGCCAAATTCAAGGAAATATTTTCATCGTGTAATCTGCCAGAGTGGCGTCGTCTGCTCGAGCTCGTTCATGCAGGCCAACCCGCTCGAGATGGCCTTCAATCTGGCCCGCCATTTCGGGTACAGTGGAACGAGCCAACAGGGTGCGCTAGAAACACTGCAACAGGTTCCAGCGAAACAGTTGGCCCAGCAGCAACGTAAAGCCCTTGGTCAGCATGCGGAGAAGCAGTCCGATCTTGTCTTCATCTTTCTCCCCGTAGTGGAGCAACACCTCACCGAACACTCCATCATAACAAAACCCCCCGAAGAGTTGCTCAAATCGTACGACACACTCCGTACGCCCCTGCTGGAAGGCTGCAACGATGCGGAAGGCATACTCGGTCTGTACATCCTACGACGCAAGACACGCGGCGAGGACATACGCCATCTCCCGGGTCGACTAGCCTCCAAGCTGTTCCGTCACCTGGACACTGCGGAGCTTGCCGAAGTAACACACAAGATACGGAAGTTCTATTTCGCCAACGATCCTCCATCCGCATGGTCTACCGATCAGATC]
[+] EMBL BX609211 [TTCCTGTACCTCCCAGAGGCTGATGTTGAGGGAAACGCGGGCCTAAAAGATCAGCTGATGGCGCTCCGGTGGGTCCATGAAAACATTGCCAGCTTCGGTGGCGATCCCCACAACGTGACGCTGTTCGGTGAAAGTGCCGGCAGCTTCTCTACATATCTGCACATGCTCTCGCCAAATTCAAGGAAATATTTTCATCGTGTAATCTGCCAGAGTGGCGTCGTCTGCTCGAGCTCGTTCATGCAGGCCAACCCGCTCGAGATGGCCTTCAATCTGGCCCGCCATTTCGGGTACAGTGGAACGAGCCAACAGGGTGCGCTAGAAACACTGCAACAGGTTCCAGCGAAACAGTTGGCCCAGCAGCAACGTAAAGCCCTTGGTCAGCATGCGGAGAAGCAGTCCGATCTTGTCTTCATCTTTCTCCCCGTAGTGGAGCAACACCTCACCGAACACTCCATCATAACAAAACCCCCCGAAGAGTTGCTCAAATCGTACGACACACTCCGTACGCCCCTGCTGGAAGGCTGCAACGATGCGGAAGGCATACTCGGTCTGTACATCCTACGACGCAAGACACGCGGCGAGGACATACGCCATCTCCCGGGTCGACTAGCCTCCAAGCTGTTCCGTCACCTGGACACTGCGGAGCTTGCCGAAGTAACACACAAGATACGGAAGTTCTATTTCGCCAACGATCCTCCATCCGCATGGTCTACCGATCAGATC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6151#0 ------------------------------------------------------------
consensus_6151#1 TTCCTGTACCTCCCAGAGGCTGATGTTGAGGGAAACGCGGGCCTAAAAGATCAGCTGATG 60
consensus_6151#0 ------------------AAAGACCTGGTTTCTGTTGGCGAAGCAACACAAAACAGAGTT 42
consensus_6151#1 GCGCTCCGGTGGGTCCATGAAAACATTGCCAGCTTCGGTGGCGATCCCCACAACGTGACG 120
** ** * * * ** * * * ** ***
consensus_6151#0 CATGATAACAAGAGAGCAGATTGAGCTGTTTTCGGACACAGACGAAATTGTTGATGCGTC 102
consensus_6151#1 CTGTTCGGTGAAAGTGCCGGC--AGCTTCTCTACATATCTGCACATGCTCTCGCCAAATT 178
* * ** ** * **** * * * * * * * * *
consensus_6151#0 AATTGGAATTGCTGCATCAAAACAACAAGTACAGCAAGAACATGCCCAACGAGATAACGA 162
consensus_6151#1 CAAGGAAATATTTTCATCGTGTAATCTGCCAGAGTGGCGTCGT-CTGCTCGAGCTCGTTC 237
* * *** * **** * * * ** * * * **** *
consensus_6151#0 GTTCCTGTTGCTGAGCTTGTGATATTTATGCTTCAAG---AAGATTCTAAGTACAATCTC 219
consensus_6151#1 ATGCAGGCCAACCCGCTCGAGATGGCCTTCAATCTGGCCCGCCATTTCGGGTACAGTGGA 297
* * * *** * *** * ** * *** ***** *
consensus_6151#0 CTTTCTCGGCACCAATTTCACAGAAACACTGCAACAGGTTCCAGCGAAACAGTTGGCCCA 279
consensus_6151#1 ACGAGCCAACAG-GGTGCGCTAGAAACACTGCAACAGGTTCCAGCGAAACAGTTGGCCCA 356
* ** * ***************************************
consensus_6151#0 GCAGCAACGTAAAGCCCTTGGTCAGCATGCAGAGAAGCAGTCCGATCTTGTCTTCATCTT 339
consensus_6151#1 GCAGCAACGTAAAGCCCTTGGTCAGCATGCGGAGAAGCAGTCCGATCTTGTCTTCATCTT 416
****************************** *****************************
consensus_6151#0 TCTCCCCGTAGTGGAGCAACACCTCACCGAACACTCCATCATAACAAAACCCCCCGAAGA 399
consensus_6151#1 TCTCCCCGTAGTGGAGCAACACCTCACCGAACACTCCATCATAACAAAACCCCCCGAAGA 476
************************************************************
consensus_6151#0 GTTGCTCAAATCGTACGACACACTCCGTACGCCCCTGCTCGAAGGCTGCAACGATGCGGA 459
consensus_6151#1 GTTGCTCAAATCGTACGACACACTCCGTACGCCCCTGCTGGAAGGCTGCAACGATGCGGA 536
*************************************** ********************
consensus_6151#0 AGGCATACTCGGTCTGTACATCCTACGACGCAAGACACGCGGCGAGGACATACGCCATCT 519
consensus_6151#1 AGGCATACTCGGTCTGTACATCCTACGACGCAAGACACGCGGCGAGGACATACGCCATCT 596
************************************************************
consensus_6151#0 CCCGGGTCGACTAGCCTCCAAGCTGTTCCGTCACCTGGACACTACGGAGCTTGCCGAAGT 579
consensus_6151#1 CCCGGGTCGACTAGCCTCCAAGCTGTTCCGTCACCTGGACACTGCGGAGCTTGCCGAAGT 656
******************************************* ****************
consensus_6151#0 AACAGACAAGATACGGAAGTTCTATTTCGCCAACGAACCTCCATCCGCATGGTCCACCGA 639
consensus_6151#1 AACACACAAGATACGGAAGTTCTATTTCGCCAACGATCCTCCATCCGCATGGTCTACCGA 716
**** ******************************* ***************** *****
consensus_6151#0 TCAGATCAAGCACCTGCTGACGGACGTGATCTTCATGATGGACTCCGCGATCAATGCCGA 699
consensus_6151#1 TCAGATC----------------------------------------------------- 723
*******
consensus_6151#0 ATGGCTTGCCAAGTATCAGCCGAACTTGCGGCACTATCACTACCGCTTCACGTACGACGG 759
consensus_6151#1 ------------------------------------------------------------
consensus_6151#0 TCGGTACAGTTTGCTGAAGCGCCTGTTCCTGAGTGCGTCCGTGTCCGGGGCCTGCCATGG 819
consensus_6151#1 ------------------------------------------------------------
consensus_6151#0 GGATGACTTGATGTACATGTTCAAACCAAAGTTCTTGCCTACCTTTGCACCTGCCAGTGA 879
consensus_6151#1 ------------------------------------------------------------
consensus_6151#0 TGAGTGCCGCGTGCGGGATAACATTGTTGCCCTGTGGACCAGCTTTGCCAGACATGGGGA 939
consensus_6151#1 ------------------------------------------------------------
consensus_6151#0 TCCTTCAGCTGGTTCGCGTGAAGTCGTCGCTGTACCGTGGCGTCCGGTGGGAAAGATTTC 999
consensus_6151#1 ------------------------------------------------------------
consensus_6151#0 TCGCGAAGGTTCGTCTGACTTTCGGCTAGACTGTCTGGAGATCAATGTACAGCCGGCTAT 1059
consensus_6151#1 ------------------------------------------------------------
consensus_6151#0 GGTGAGTGACCGTGCCGGGAGCGTGCTTACTTCTGGAGAGATCTGCTCGAAGCACACCGA 1119
consensus_6151#1 ------------------------------------------------------------
consensus_6151#0 AAGGGTCATCTATGAAAGCTCAGTGTGTTCCAGTGTGTGATAACCGTATTATGCGTTTAG 1179
consensus_6151#1 ------------------------------------------------------------
consensus_6151#0 TTTGTAAGTGGTTTCAAAGGCTACTCATAGGTAGTAGTGCTCCGAGTTTAAGGATGCATG 1239
consensus_6151#1 ------------------------------------------------------------
consensus_6151#0 ACGCGAAAGCCAAGCTTTCACAAGAGTTGTTTATTCCCAAAAACAAACAATGCTCCCACT 1299
consensus_6151#1 ------------------------------------------------------------
consensus_6151#0 GCCTTGGAGGTTTTGGTGCCTCAAAATATATCAATTTTATTGCTTTGGGTA 1350
consensus_6151#1 ---------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||