cluster # 6152

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 6152 cluster # 6152 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6152#0 length = 933 sequences # 3

consensus_6152#1 length = 629 sequences # 1
consensus_6152#2 length = 453 sequences # 1

consensusID : consensus_6152#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 933
fasta sequence

                              [CCGCGGACGCGTGGGTCAAGACGCGCGATGTCGCAATTGGTGCAGCGCACGGCCAGCAGCCCCACAGTATGCCCCGTCGTGCCCTTCTGGTCGTGGTAGTTTGCTGTTGCCGTTGAGTGCGGGGACCACGGAAAACCGCGTAAAGCTGACTGATAGGGAAAAAGGCACCCCAGCCATTCAGAGCGTCATAAACAGTGTGTGCAAACGGCGGCACCAGCTTGGTAGCGATCGGGGTCGGAGGTGTGTCGACGCGTAGTGTGTAGTGTGTGGCTGTGTGTGACACAAGAAAATAGAATCCCTTCGGGCAGACTCCAGATTGGTGGTAGAGTGCGCGCGGTCCTTCACGGGGTAACGAAACAGCGAGTCACGGGTGACGACG--G-CGACACGGTACACAGCGAACGCGGCACAGAAGAGCAACAGTGATCATTCTGGTTTCGTCTTCGGCAGCGGCAAGGCACTCGACTCTTCCTCCAGCAGCAGTAGCTGAAGCTGAGCGAAGCAAACGAAACTCTGGGATAAATAATTCGGCGTCGTACAGTTGGTAGACTTACTGCGACAGCCTACTTCGACGGACCCACACAGTAGTGTAATCGAAAAGCTGTCGAATGAGAATGGAAAAGTGACCAAATAAAGGTCTTATACTGGCACACTAGACTTATTAGCACCATGGAACCGACTTCCAGCCCTTGCCAAAGGGGGAATGATTCGGATAAGGAAGTAAAAAAAAGCACTGCTTAAGCATCTATCTATTCTCTCCACGCAAACGTTTGACGAAACTGTGATTTTAGTTTTGGTTTTTTTTTTTTTGGTTTTAAGAGACAGTGCGTTTCTTTTACTCCCACAAAAATCAAAACTGACTATTTGAAATTGATTGAAAGTGAACTGATGATAAAAAGAGAACGAAAAAGAACTGCCCCATACTCACGCACCTGA]

[+] EMBL BM601734             [CCGCGGACGCGTGGGTCAAGACGCGCGATGTCGCAATTGGTGCAGCGCACGGCCAGCAGCCCCACAGTATGCCCCGTCGTGCCCTTCTGGTCGTGGTAGTTTGCTGTTGCCGTTGAGTGCGGGGACCACGGAAAACCGCGTAAAGCTGACTGATAGGGAAAAAGGCACCCCAGCCATTCAGAGCGTCATAAACAGTGTGTGCAAACGGCGGCACCAGCTTGGTAGCGATCGGGGTCGGAGGTGTGTCGACGCGTAGTGTGTAGTGTGTGGCTGTGTGTGACACAAGAAAATAGAATCCCTTCGGGCAGACTCCAGATTGGTGGTAGAGTGCGCGCGGTCCTTCACGGGGTAACGAAACAGCGAGTCACGGGTGACGACG  G CGACACGGTACACAGCGAACGCGGCACAGAAGAGCAACAGTGATCATTCTGGTTTCGTCTTCGGCAGCGGCAAGGCACTCGACTCTTCCTCCAGCAGCAGTAGCTGAAGCTGAGCGAAGCAAACGAAACTCTGGGATAAATAATTCGGCGTCGTACAGTTGGTAGACTTACTGCGACAGCCTACTTCGACGG                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL BX629063             [                                                                                                                                                                                                                                                                                    GTGACACAAGAAAATAGAATCCCTTCGGGCAGACTCCAGATTGGTGGTAGAGTGCGCGCGGTCCTTCACGGGGTAACGAAACAGCGAGTCACGGGTGACGACGACGACGACGCGGTACACAGCGAACGCGGCACAGAAGAGCAACAGTGATCATTCTGGTTTCGTCTTCGGCAGCGGCAAGGCACTCGACTCTTCCTCCAGCAGCAGTAGCTGAAGCTGAGCGAAGCAAACGAAACTCTGGGATAAATAATTCGGCGTCGTACAGTTGGTAGACTTACTGCGACAGCCTACTTCGACGGACCCACACAGTAGTGTAATCGAAAAGCTGTCGAATGAGAATGGAAAAGTGACCAAATAAAGGTCTTATACTGGCACACTAGACTTATTAGCACCATGGAACCGACTTCCAGCCCTTGCCAAAGGGGGAATGATTCGGATAAGGAAGTAAAAAAAAGCACTGCTTAAGCATCTATCTATTCTCTCCACGCAAACGTTTGACGAAACTGTGATTTTAGTTTTGGTTTTTTTTTTTTTGGTTTTAAGAGACAGTGCGTTTCTTTTACTCCCACAAAAATCAAAACTGACTATTTGAAATTGATTGAAAGTGAACTGATGATAAAAAGAGAACGAAAAAGAACTGCCCCATACTCACGCACCTGA]
[+] EMBL BX614176             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GAACCGACTTCCAGCCCTTGCCAAAGGGGGAATGATTCGGATAAGGAAGTAAAAAAAAGCACTGCTTAAGCATCTATCTATTCTCTCCACGCAAACGTTTGACGAAACTGT                                                                                                                                                         ]




>consensus_6152#0
CCGCGGACGCGTGGGTCAAGACGCGCGATGTCGCAATTGGTGCAGCGCACGGCCAGCAGC
CCCACAGTATGCCCCGTCGTGCCCTTCTGGTCGTGGTAGTTTGCTGTTGCCGTTGAGTGC
GGGGACCACGGAAAACCGCGTAAAGCTGACTGATAGGGAAAAAGGCACCCCAGCCATTCA
GAGCGTCATAAACAGTGTGTGCAAACGGCGGCACCAGCTTGGTAGCGATCGGGGTCGGAG
GTGTGTCGACGCGTAGTGTGTAGTGTGTGGCTGTGTGTGACACAAGAAAATAGAATCCCT
TCGGGCAGACTCCAGATTGGTGGTAGAGTGCGCGCGGTCCTTCACGGGGTAACGAAACAG
CGAGTCACGGGTGACGACGGCGACACGGTACACAGCGAACGCGGCACAGAAGAGCAACAG
TGATCATTCTGGTTTCGTCTTCGGCAGCGGCAAGGCACTCGACTCTTCCTCCAGCAGCAG
TAGCTGAAGCTGAGCGAAGCAAACGAAACTCTGGGATAAATAATTCGGCGTCGTACAGTT
GGTAGACTTACTGCGACAGCCTACTTCGACGGACCCACACAGTAGTGTAATCGAAAAGCT
GTCGAATGAGAATGGAAAAGTGACCAAATAAAGGTCTTATACTGGCACACTAGACTTATT
AGCACCATGGAACCGACTTCCAGCCCTTGCCAAAGGGGGAATGATTCGGATAAGGAAGTA
AAAAAAAGCACTGCTTAAGCATCTATCTATTCTCTCCACGCAAACGTTTGACGAAACTGT
GATTTTAGTTTTGGTTTTTTTTTTTTTGGTTTTAAGAGACAGTGCGTTTCTTTTACTCCC
ACAAAAATCAAAACTGACTATTTGAAATTGATTGAAAGTGAACTGATGATAAAAAGAGAA
CGAAAAAGAACTGCCCCATACTCACGCACCTGA

consensusID : consensus_6152#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 629
fasta sequence

                              [TGCCCGAGGNTCCATCGATGTACGAACGGGTCGAATATGCATTTCTGTGTTTTTTTCTTCTTCTTCTTTTTTGTTTCATTTCATTTCCTTCTTTTTTATGTCTGGTTCTTCCAATAATCATTGTTTGTGTGCGTGTGTGTGTCTGTCCAAACACATCCAAATTCATCCAAAACAAAAAAAACACTATCAGGGATGGCGCGGAAGTACCAGTGCCAGCAATTATTACTACCGCAGACATTTCCGCATTTGTGATTACTATGTGTAAAAGGGGGACGAGACAACGAAGAAAGGAAGGAAAGAAGGGAGGAATGTATTTAAAAATAAAAGAAGAGATTTCATATGTACTAAACAACAACGAAATTGAGGAAAAGATTTCCGGATTTCGGAAGTAAAGACATGTAAAGGACAAGAGAGGGAAAGATAGAGAGGAAAATAGAGAAAAGCTGTCGAATGAGAATGGAAAAGTGACCAAATAAAGGTCTTATACTGGCACACTAGACTTATTAGCACCATGGAACCGACTTCCAGCCCTTGCCAAAGGGGGAATGATTCGGACTAAGGAAGTAAAAAAAAGCACTGCTTAAGCATCTATCTATTCTCTCCACGCAAACGTTTGACGAAACTGTGAT]

[+] EMBL AL933803             [TGCCCGAGGNTCCATCGATGTACGAACGGGTCGAATATGCATTTCTGTGTTTTTTTCTTCTTCTTCTTTTTTGTTTCATTTCATTTCCTTCTTTTTTATGTCTGGTTCTTCCAATAATCATTGTTTGTGTGCGTGTGTGTGTCTGTCCAAACACATCCAAATTCATCCAAAACAAAAAAAACACTATCAGGGATGGCGCGGAAGTACCAGTGCCAGCAATTATTACTACCGCAGACATTTCCGCATTTGTGATTACTATGTGTAAAAGGGGGACGAGACAACGAAGAAAGGAAGGAAAGAAGGGAGGAATGTATTTAAAAATAAAAGAAGAGATTTCATATGTACTAAACAACAACGAAATTGAGGAAAAGATTTCCGGATTTCGGAAGTAAAGACATGTAAAGGACAAGAGAGGGAAAGATAGAGAGGAAAATAGAGAAAAGCTGTCGAATGAGAATGGAAAAGTGACCAAATAAAGGTCTTATACTGGCACACTAGACTTATTAGCACCATGGAACCGACTTCCAGCCCTTGCCAAAGGGGGAATGATTCGGACTAAGGAAGTAAAAAAAAGCACTGCTTAAGCATCTATCTATTCTCTCCACGCAAACGTTTGACGAAACTGTGAT]




>consensus_6152#1
TGCCCGAGGNTCCATCGATGTACGAACGGGTCGAATATGCATTTCTGTGTTTTTTTCTTC
TTCTTCTTTTTTGTTTCATTTCATTTCCTTCTTTTTTATGTCTGGTTCTTCCAATAATCA
TTGTTTGTGTGCGTGTGTGTGTCTGTCCAAACACATCCAAATTCATCCAAAACAAAAAAA
ACACTATCAGGGATGGCGCGGAAGTACCAGTGCCAGCAATTATTACTACCGCAGACATTT
CCGCATTTGTGATTACTATGTGTAAAAGGGGGACGAGACAACGAAGAAAGGAAGGAAAGA
AGGGAGGAATGTATTTAAAAATAAAAGAAGAGATTTCATATGTACTAAACAACAACGAAA
TTGAGGAAAAGATTTCCGGATTTCGGAAGTAAAGACATGTAAAGGACAAGAGAGGGAAAG
ATAGAGAGGAAAATAGAGAAAAGCTGTCGAATGAGAATGGAAAAGTGACCAAATAAAGGT
CTTATACTGGCACACTAGACTTATTAGCACCATGGAACCGACTTCCAGCCCTTGCCAAAG
GGGGAATGATTCGGACTAAGGAAGTAAAAAAAAGCACTGCTTAAGCATCTATCTATTCTC
TCCACGCAAACGTTTGACGAAACTGTGAT

consensusID : consensus_6152#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 453
fasta sequence

                              [CCGCTCTTCCTCCAGCAGCAGTAGCTGAAGCTGAGCGAAGCAAACGAAACTCTGGGATAAATAATTCGGCGTCGTACAGTTGGTAGACTTACTGCGACAGCCTACTTCGACGGACCCACACAGTAGTGTAATCGGAAAGGTGGCCTAAGTGTGTGTGTGTGTTTGCAGTGGTAGTATGCAAGTGTGTGAGCACATAAGGAAGTGAATATTACGAAGCCCTTCTCATCCTAGCATGGGAGCCGTGTGAAGCAGTGTGTGTGTGCGTTCATAGTAATTATCCAGTAGCGCAAGTAGAGTTGCTAGCGGACTGCCGAACTACTACAGTACAAAGCCAAAACACGGCGATAGGATCCCTGGTCTACCTCTACAGTACAGCGCAGCGGCACATCACAGCCATAAACACAGCAGCCACAGAATGAGCAACGAACTGTCCTGCAAGGGAAGCCCACATCC]

[+] EMBL BM639800             [CCGCTCTTCCTCCAGCAGCAGTAGCTGAAGCTGAGCGAAGCAAACGAAACTCTGGGATAAATAATTCGGCGTCGTACAGTTGGTAGACTTACTGCGACAGCCTACTTCGACGGACCCACACAGTAGTGTAATCGGAAAGGTGGCCTAAGTGTGTGTGTGTGTTTGCAGTGGTAGTATGCAAGTGTGTGAGCACATAAGGAAGTGAATATTACGAAGCCCTTCTCATCCTAGCATGGGAGCCGTGTGAAGCAGTGTGTGTGTGCGTTCATAGTAATTATCCAGTAGCGCAAGTAGAGTTGCTAGCGGACTGCCGAACTACTACAGTACAAAGCCAAAACACGGCGATAGGATCCCTGGTCTACCTCTACAGTACAGCGCAGCGGCACATCACAGCCATAAACACAGCAGCCACAGAATGAGCAACGAACTGTCCTGCAAGGGAAGCCCACATCC]




>consensus_6152#2
CCGCTCTTCCTCCAGCAGCAGTAGCTGAAGCTGAGCGAAGCAAACGAAACTCTGGGATAA
ATAATTCGGCGTCGTACAGTTGGTAGACTTACTGCGACAGCCTACTTCGACGGACCCACA
CAGTAGTGTAATCGGAAAGGTGGCCTAAGTGTGTGTGTGTGTTTGCAGTGGTAGTATGCA
AGTGTGTGAGCACATAAGGAAGTGAATATTACGAAGCCCTTCTCATCCTAGCATGGGAGC
CGTGTGAAGCAGTGTGTGTGTGCGTTCATAGTAATTATCCAGTAGCGCAAGTAGAGTTGC
TAGCGGACTGCCGAACTACTACAGTACAAAGCCAAAACACGGCGATAGGATCCCTGGTCT
ACCTCTACAGTACAGCGCAGCGGCACATCACAGCCATAAACACAGCAGCCACAGAATGAG
CAACGAACTGTCCTGCAAGGGAAGCCCACATCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6152#0      CCGCGGACGCGTGGGTCAAGACGCGCGATGTCGCAATTGGTGCAGCGCACGGCCAGCAGC 60
consensus_6152#1      ------------------------------------------------------------
consensus_6152#2      ------------------------------------------------------------
                                                                                  

consensus_6152#0      CCCACAGTATGCCCCGTCGTGCCCTTCTGGTCGTGGTAGTTTGCTGTTGCCGTTGAGTGC 120
consensus_6152#1      ------------------------------------------------------------
consensus_6152#2      ------------------------------------------------------------
                                                                                  

consensus_6152#0      GGGGACCACGGAAAACCGCGTAAAGCTGACTGATAGGGAAAA-AGGCACCCCAGCCATTC 179
consensus_6152#1      ------TGCCCGAGGNTCCATCGATGT-ACGAACGGGTCGAATATGCATTTCTGT-GTTT 52
consensus_6152#2      ------------------------------------------------------------
                                                                                  

consensus_6152#0      AGAGCGTCATAAACAGTGTGTGCAAACGGCGGCACCAGCTTGGTAGCGATCGGGGTCGGA 239
consensus_6152#1      TTTTCTTCTTCTTCTTTTTTGTTTCATTTCATTTCCTTCTTTTTTATG-TCTGGTTC--- 108
consensus_6152#2      ------------------------------------------------------------
                                                                                  

consensus_6152#0      GGTGTGTCGACGCGTAGTGTGTAGTGTGTGGCTGTGTGTGACACAAGAAAATAGAATCCC 299
consensus_6152#1      -TTCCAATAAT-CATTGTTTGT-GTGCGTGTGTGTGTCTGTCCAAACACATCCAAATTCA 165
consensus_6152#2      ------------------------------------------------------------
                                                                                  

consensus_6152#0      TTCGGGCAGACTCCAGATTGGTGGTAGAGTGCGCGCGGTCCTTCACGGGGTAACGAAACA 359
consensus_6152#1      TCCAAAACAAA--AAAAACACTATCAGGGATGGCGCGG---------AAGTACCAGTGCC 214
consensus_6152#2      ------------------------------------------------------------
                                                                                  

consensus_6152#0      GCGAGTCACGGGTGACGACGGCGACACGGTACACAGCGAACGCGGCACAGAAGAGCAACA 419
consensus_6152#1      AGCAATTATTACTACCGCAGACATTTCCGCAT-TTGTGATTACTATGTGTAAAAGGGGGA 273
consensus_6152#2      ------------------------------------------------------------
                                                                                  

consensus_6152#0      GTGATCATTCTGGTTTCGTCTTCGGCAGCGGCAAGGCACTCGACTCTTCCTCCAGCAGCA 479
consensus_6152#1      CGAGACAACGAAGAAAGGAA--GGAAAGAAGGGAGGAAT--GTATTTAAAAATAAAAGAA 329
consensus_6152#2      ----------------------------------------CCGCTCTTCCTCCAGCAGCA 20
                                                                  * *      *  ** *

consensus_6152#0      GTAGCTGAAGCTGAGCGAAGCAA--ACGAAACTCTGGGATAAATAATTCGGCGTCGTACA 537
consensus_6152#1      GAGATTTCATATGTACTAAACAACAACGAAATTGAGGAAAAGATTTCCGGATTTCGGA-- 387
consensus_6152#2      GTAGCTGAAGCTGAGCGAAGCAA--ACGAAACTCTGGGATAAATAATTCGGCGTCGTACA 78
                      *    *  *  **  * ** ***  ****** *  ** * * **     *   *** *  

consensus_6152#0      GTTGGTAGACTTACTGCGACAGCCTACTTCGACGGACCCACACAGTAGTGTAATCGAAAA 597
consensus_6152#1      ---AGTAAAGACA-TGTAAAGGACAAGAGAGGGAAAGATAGAGAGGAAAATAGA-GAAAA 442
consensus_6152#2      GTTGGTAGACTTACTGCGACAGCCTACTTCGACGGACCCACACAGTAGTGTAATCGGAAA 138
                          *** *   * **  *  * * *    *    *   * * ** *   **   * ***

consensus_6152#0      GCTGTCGAATGAGAATGGAAAAGTGACCAAATAAAGGTCTTATACTGGCACACTAGACTT 657
consensus_6152#1      GCTGTCGAATGAGAATGGAAAAGTGACCAAATAAAGGTCTTATACTGGCACACTAGACTT 502
consensus_6152#2      GGTGGC--CTAAGTGTGTGTGTGTGTTTG--CAGTGGTAGTATGCAAGTGTG-TGAGCAC 193
                      * ** *   * **  **     ***       *  ***  *** *  *     *   *  

consensus_6152#0      ATTAGCACCATGGAACCGACTTCCAGCCCTTGCCAAAGGGGGAATGATTCGGA-TAAGGA 716
consensus_6152#1      ATTAGCACCATGGAACCGACTTCCAGCCCTTGCCAAAGGGGGAATGATTCGGACTAAGGA 562
consensus_6152#2      ATAAGGAA-GTGAATATTACG--AAGCCCTTCTCATCCTAGCATGGGAGCCGTGTGAAGC 250
                      ** ** *   ** *    **    *******  **     * *  *   * *  * * * 

consensus_6152#0      AGTAAAAAAAAGCACTGCTTAAGCATCTATCTATTCTCTCCACGCAAACGTTTGACGAAA 776
consensus_6152#1      AGTAAAAAAAAGCACTGCTTAAGCATCTATCTATTCTCTCCACGCAAACGTTTGACGAAA 622
consensus_6152#2      AGTGTGTGTGTGCGTTCAT--AGTAATTATCCAGTAGCGC-AAGTAGAGTTGCTAGCGGA 307
                      ***        **  *  *  ** *  **** * *  * * * * * *  *   *    *

consensus_6152#0      CTGTGATTTTAGTTTTGGTTTTTTTTTTTTTGGTTTTAAGAGACAGTGCGTTTCTTTTAC 836
consensus_6152#1      CTGTGAT----------------------------------------------------- 629
consensus_6152#2      CTGCCGAACTACTACAG-----TACAAAGCCAAAACACGGCGATAGGATCCCTGGTCTAC 362
                      ***                                                         

consensus_6152#0      TCCCACAAAAATCAAAACTGACTATTTGAAATTGATTGAAAGTGAACTGATGATAAAAAG 896
consensus_6152#1      ------------------------------------------------------------
consensus_6152#2      CTCTACAGTACAGCGCAGCGGC-ACATCACAGCCAT---AAACACAGCAGCCACAGAATG 418
                                                                                  

consensus_6152#0      AGAACGAAAAAGAACTGCCCCATACTCACGCACCTGA 933
consensus_6152#1      -------------------------------------
consensus_6152#2      AGCAACGAACTGTCCTGCAAGGGAAGCCCACATCC-- 453