These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6155#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1195 fasta sequence [CGCCCGAGGNTAACTATGAATGTTAACACAAATTGGCGGTTAGTAATCGAACCAGCAGATGGAAAATAAGATAATTCAGAAACATTAATCTCTTTTTAAACTTAATTACAGAATCAAAAACAGCTATCTTCATATAATATGATGTACACACACACACATACACTTACAAATCAAAACATTCTTTAATAACGTAACAGCACAGAATCATACGAACACGGTAATATATATTTGTTGACCCTTCATTGCAAAGTAAGCGGAACANG-ATGATCAAAATAACGATCA-TTTGAAACGGTAATTCCGAGGATTCGAATTTTATTACGATCAGAGATACCGATATGATTATGCTGGATGGCGAAACTAGACGAAAAATGCCCGTTGG-AAGATAAAATCCACAGTACCGATTTCCAGCGGCACCAAA-CAAATTCAATCCCAGCAAGCCGAA-CAAGGGGGGTTCCTTTCGCCCTCAAAAGACGCCA-CAATCAATCACTAATCGTACAACAACAAACGTTAGAAAAGTACACGTGTCCTTACAGCTCACGGGGCGACACCTCCGTACAAGACGTACAAGGGCACACGGCTGAGTGGGGCCTGTTTGAGAGATTTGGGTAGTGTTCTATAAATATACTTTAACTATATTATAACAAAAAACAAGAATTGCTGGAAAGAATCGAGCACGCGATTGTGTGTGTGCATGTATGTAATTGTGTGTTTCTGCTGTTTTAATTTCATACTTCTAATTGGAAAACGATGAACAAGTGTAGCAACAACACGATATAAAAAGATACTTATCCTTCTCTCTATGCTAAAACCTGCACGGAATATAGATGTGAAAGAAGAAAAGGAAATGGGGTTCTAGGACCTAGTTACTATCTACTATTACTACCACTACAACCGATTCGTATGCACGATTCCTAACCCTGCAGCAGCACACATTCGGAAGGTTTCAAAACTACTACTCTCGTCCCTTTTTTCTGTACACACCTGTATCTCGAATCATCTCAGCAAACTGTTTTCCTAACTTTTCCATGTTTCCACACTAAATCGTGACCTCAAACACGTGCTCGCTACGTAGAAAGAGAGAGAGATAGAGAGATAGACAGAGTGGCATGCCTTTTTAGGAGCAGAAGCGATCAACTCTCACACACTGTGTCTGTTAGTAGAAATCCACTGTCCTAGATGTAGATTATATGCATTA] [+] EMBL AL695654 [CGCCCGAGGNTAACTATGAATGTTAACACAAATTGGCGGTTAGTAATCGAACCAGCAGATGGAAAATAAGATAATTCAGAAACATTAATCTCTTTTTAAACTTAATTACAGAATCAAAAACAGCTATCTTCATATAATATGATGTACACACACACACATACACTTACAAATCAAAACATTCTTTAATAACGTAACAGCACAGAATCATACGAACACGGTAATATATATTTGTTGACCCTTCATTGCAAAGTAAGCGGAACANGCATGATCAAAATAACGATCA TTTGAAACGGTAATTCCGAGGATTCGAATTTTATTACGATCAGAGATACCGATATGATTATGCTGGATGGCGAAACTAGACGAAAAATGCCCGTTGGCAAGATAAAATCCACAGTACCGATTTCCAGCGGCACCAAAGCAAATTCAATCCCAGCAAGCCGAACCAAGGGGGGTTCCTTTCGCCCTCAAAAGACGCCACCAATCAATCACTAATCG ] [+] EMBL BX610051 [ TCATTGCAAAGTAAGCGGAAAAAG ATGATCAAAATAACGATCATTTTGAAACGGTAATTCCGAGGATTCGAATTTTATTACGATCAGAGATACCGATATGATTATGCTGGATGGCGAAACTAGACGAAAAATGCCCGTTGG AAGATAAAATCCACAGTACCGATTTCCAGCGGCACCAAA CAAATTCAATCCCAGCAAGCCGAA AAAGGGGGGTTCCTTTCGCCCTCAAAAGACGCCA CAATCAATCACTAATCGTACAACAACAAACGTTAGAAAAGTACACGTGTCCTTACAGCTCACGGGGCGACACCTCCGTACAAGACGTACAAGGGCACACGGCTGAGTGGGGCCTGTTTGAGAGATTTGGGTAGTGTTCTATAAATATACTTTAACTATATTATAACAAAAAACAAGAATTGCTGGAAAGAATCGAGCACGCGATTGTGTGTGTGCATGTATGTAATTGTGTGTTTCTGCTGTTTTAATTTCATACTTCTAATTGGAAAACGATGAACAAGTGTAGCAACAACACGATATAAAAAGATACTTATCCTTCTCTCTATGCTAAAACCTGCACGGAATATAGATGTGAAAGAAGAAAAGGAAATGGGGTTCTAGGACCTAGTTACTATCTACTATTACTACCACTACAAC ] [+] EMBL BX609415 [ CTGTTTGAGAGATTTGGGTAGTGTTCTATAAATATACTTTAACTATATTATAACAAAAAACAAGAATTGCTGGAAAGAATCGAGCACGCGATTGTGTGTGTGCATGTATGTAATTGTGTGTTTCTGCTGTTTTAATTTCATACTTCTAATTGGAAAACGATGAACAAGTGTAGCAACAACACGATATAAAAAGATACTTATCCTTCTCTCTATGCTAAAACCTGCACGGAATATAGATGTGAAAGAAGAAAAGGAAATGGGGTTCTAGGACCTAGTTACTATCTACTATTACTACCACTACAACCGATTCGTATGCACGATTCCTAACCCTGCAGCAGCACACATTCGGAAGGTTTCAAAACTACTACTCTCGTCCCTTTTTTCTGTACACACCTGTATCTCGAATCATCTCAGCAAACTGTTTTCCTAACTTTTCCATGTTTCCACACTAAATCGTGACCTCAAACACGTGCTCGCTACGTAGAAAGAGAGAGAGATAGAGAGATAGACAGAGTGGCATGCCTTTTTAGGAGCAGAAGCGATCAACTCTCACACACTGTGTCTGTTAGTAGAAATCCACTGTCCTAGATGTAGATTATATGCATTA] [+] EMBL AGA283111 [ CTAATTGGAAAACGATGAACAAGTGTAGCAACAACACGATATAAAAAGATACTTATCCTTCTCTCTATGCTAAAACCTGCACGGAATATAGATGTNAAAGAAGAAAAGGAAATGGGGTTCTAGGACCTAGTTACTATCTACTATTACTACCACTACAACCGATTCGTATGCACGATTCCTAACCCTGCAGCAGCACANATTCGGAAGGTTTCAAAACTACTACTCTCGTCCCTTTTTTCTGTACACACCTGTATYTCGAATCATCTNAGCAAACTGTTTTCCTAACTTTTCCATGTTTCCACACTAAATCGTGANCTCAAACACGTGCTCGCTACGTAGA ] consensusID : consensus_6155#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 749 fasta sequence [ATGCAGAATACCCGCGGTTTGTTTTAATTTCATACTTCTACTTGGAAAACGATGANCAAGTGTAGCAACAACACGATATAAAAGAGATACTTATACCTATCTCTCTATAGCTAAAACCTGCACGGAATATAGATAGTAGAAAGAAGNACAAGGCAATGGGGTTCTAGGACGCTAAAGATATAACATATACTAAACTATATANTTAAGCCCAANCTAAAGCAANACCCNGGACTATCCGTTACATTAGCAAGGGAATNAACCTNAAAAACCACATTGACANGGACGCGGNAGGCACATATACCAGGACANACGNGNNTATACTCACACAGACAGTTAAACATNAACCTAANTCGGAGACGCCAGAGAGTATGAACANAAGGTCAGCACAACAAACGTAGGNAAAGTACCGACNGGGAANTCCCATCCNATCNGNCGAGAAGAGTATGGTNAGANAGTTAGCCCCGTTAAAAGGGGTTNTGANTGCGCGGNTGGNGNGTATANATCGCNATNGCCTTANAGGCAATCAGAGANANGGGAAGNGCGTNAGCNAGGGAACGAAGANGGGANTGAGACTANCNACCGNTNANNGGNGTAAGGACNAGAAGGGCAGGGAGGGCGGGGNGTCGACAGCAAGCGGGGCAGGGGNGGNAGTGCGGGGGGGGGAAGGGGATNGGGCAGGAACAGNGAGNCATGAANNGAGAGGGGGNNCAGTGNAAGGGGGCAANGGGGNGNGAGTNNNCGNAGGTGGG] [+] EMBL AL695409 [ATGCAGAATACCCGCGGTTTGTTTTAATTTCATACTTCTACTTGGAAAACGATGANCAAGTGTAGCAACAACACGATATAAAAGAGATACTTATACCTATCTCTCTATAGCTAAAACCTGCACGGAATATAGATAGTAGAAAGAAGNACAAGGCAATGGGGTTCTAGGACGCTAAAGATATAACATATACTAAACTATATANTTAAGCCCAANCTAAAGCAANACCCNGGACTATCCGTTACATTAGCAAGGGAATNAACCTNAAAAACCACATTGACANGGACGCGGNAGGCACATATACCAGGACANACGNGNNTATACTCACACAGACAGTTAAACATNAACCTAANTCGGAGACGCCAGAGAGTATGAACANAAGGTCAGCACAACAAACGTAGGNAAAGTACCGACNGGGAANTCCCATCCNATCNGNCGAGAAGAGTATGGTNAGANAGTTAGCCCCGTTAAAAGGGGTTNTGANTGCGCGGNTGGNGNGTATANATCGCNATNGCCTTANAGGCAATCAGAGANANGGGAAGNGCGTNAGCNAGGGAACGAAGANGGGANTGAGACTANCNACCGNTNANNGGNGTAAGGACNAGAAGGGCAGGGAGGGCGGGGNGTCGACAGCAAGCGGGGCAGGGGNGGNAGTGCGGGGGGGGGAAGGGGATNGGGCAGGAACAGNGAGNCATGAANNGAGAGGGGGNNCAGTGNAAGGGGGCAANGGGGNGNGAGTNNNCGNAGGTGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6155#0 CGCCCGAGGNTAACTATGAATGTTAACACAAATTGGCGGTTAGTAATCGAACCAGCAGAT 60 consensus_6155#1 ----------------------------------------------------------AT 2 ** consensus_6155#0 GGAAAATAAGATAATTCAGAAACATTAATCTCTT-TTTAAACTTAATTACAGAATCAAAA 119 consensus_6155#1 GCAGAATACCCGCGGTTTG---TTTTAATTTCATACTTCTACTTGGAAA-ACGATGANCA 58 * * **** * * ***** ** * ** **** * * ** * * consensus_6155#0 ACAGCTATCTTCATATAATATGATGTACACACACACACATACACTTACA-AATCAAAACA 178 consensus_6155#1 AGTGTAGCAACAACACGATATAAAAGAGATACTTATACCTATCTCTCTATAGCTAAAACC 118 * * * * **** * * * ** * ** ** * * * ***** consensus_6155#0 TTCTTTAATAACGTAACAGCACAGAATCATACGAACACGGTAATATATATTTGTTGACCC 238 consensus_6155#1 TGCACGGAATATA-GATAGTAGAAAG----AAGNACAAGGCAATGGGGTTCTAGGACGCT 173 * * * * * ** * * * * * *** ** *** * * * consensus_6155#0 TTCATTGCAAAGTAAGCGGAACANGATGATCAAAATAACGATCATTTGAAACGGTAATTC 298 consensus_6155#1 AAAGATATAACATATACTAAACTATATANTTAAGCCCA-----ANCTAAAGCAANACCCN 228 * ** ** * *** ** * ** * * * ** * * consensus_6155#0 CGAGGATTCGAATTTTATTACGATCAGAGATACCGATATGATTATGCTGGATGGCGAAAC 358 consensus_6155#1 GGACTATCCG--TTACATT---AGCAAGGGAATNAACCTNAAAAACCACATTGACANGG- 282 ** ** ** ** *** * ** * * * * * * * ** * consensus_6155#0 TAGACGAAAAATGCCCGTTGGAAGATAAAATCCACAGTACCGATTTCCAGCGGCACCAAA 418 consensus_6155#1 -ACGCGGNAGGCACATATACCAGGACANACGNGNNTATACTCACA-CAGACAGTTAAACA 340 * ** * * * * ** * * *** * * * * * * consensus_6155#0 CAAATTCAATCCCAGCAAGCCGAACAAGGGGGGTTCCTTTCGCCCTCAAAAGACGCCACA 478 consensus_6155#1 TNAACCTAANTCGGAGACGCCAGAGAGTATGAACANAAGGTCAGCACAACAAACGTAGGN 400 ** ** * * *** * * * * *** * *** consensus_6155#0 ATCAATCACTAATCGTACAACAACAAACGTTAGAAAAGTACACGTGTCCTTACAGCTCAC 538 consensus_6155#1 A--AAGTACCGACNGGGAANTCCCATCCNATCNGNCGAGAAGAGTATGGTNA-------- 450 * ** ** * * * ** * * * ** * * * consensus_6155#0 GGGGCGACACCTCCGTACAAGACGTACAAGGGCACACGGCTGAGTGGGGCCTGTTTGAGA 598 consensus_6155#1 -GANAGTTAGCCCCGTTAAAAGGGGTTNTGANTGCGCGGNTGGNGNGTATANATCGCNAT 509 * * * * **** ** * * * *** ** * * consensus_6155#0 GATTTGGGTAGTGTTCTATAAATATACTTTAACTATATTATAACAAAAAACAAGAATTGC 658 consensus_6155#1 NGCCTTANAGGCAATC---AGAGANANGGGAAGNGCGTNAGCNAGGGAACGAAGANGGGA 566 * * ** * * * * ** * * ** **** * consensus_6155#0 TGGAAAGAATCGAGCACGCGATTGTGTGTGTGCATGTATGTAATTGTGTGTTTCTGCTGT 718 consensus_6155#1 NTGAGACTANCNACCGNTNANNGGNGTAAGGACNAGAAGGGCAGGGAGGG----CGGGGN 622 ** * * * * * * ** * * * * * * * * * * * consensus_6155#0 TTTAATTTCATACTTCTAATTGGAAAACGATGAACAAGTGTAGCAACAACACGATATAAA 778 consensus_6155#1 GTCGACAGCAAGCGGGGCAG-GGGNGGNAGTGCGGGGGGGGGAAGGGGATNGGGCAGGAA 681 * * ** * * ** ** * * * * * ** consensus_6155#0 AAGATACTTATCCTTCTCTCTATGCTAAAACCTGCACGGAATATAGATGTGAAAGAAGAA 838 consensus_6155#1 CAGNGAGNCATGAANNGAGAGGGGGNNCAG--TGNAAGGGG-GCAANGGGGNGNGAGTNN 738 ** * ** * * ** * ** * * * ** consensus_6155#0 AAGGAAATGGGGTTCTAGGACCTAGTTACTATCTACTATTACTACCACTACAACCGATTC 898 consensus_6155#1 NCGNAGGTGGG------------------------------------------------- 749 * * **** consensus_6155#0 GTATGCACGATTCCTAACCCTGCAGCAGCACACATTCGGAAGGTTTCAAAACTACTACTC 958 consensus_6155#1 ------------------------------------------------------------ consensus_6155#0 TCGTCCCTTTTTTCTGTACACACCTGTATCTCGAATCATCTCAGCAAACTGTTTTCCTAA 1018 consensus_6155#1 ------------------------------------------------------------ consensus_6155#0 CTTTTCCATGTTTCCACACTAAATCGTGACCTCAAACACGTGCTCGCTACGTAGAAAGAG 1078 consensus_6155#1 ------------------------------------------------------------ consensus_6155#0 AGAGAGATAGAGAGATAGACAGAGTGGCATGCCTTTTTAGGAGCAGAAGCGATCAACTCT 1138 consensus_6155#1 ------------------------------------------------------------ consensus_6155#0 CACACACTGTGTCTGTTAGTAGAAATCCACTGTCCTAGATGTAGATTATATGCATTA 1195 consensus_6155#1 --------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||