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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6162#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1074 fasta sequence
[AATCGCCCCGAGGCTGAAAATGAAGGAAATAACGAAATGCGATAACGATGCAAGTTATGGAAGGAGATCGGTGGTATTGATTCAAGCAAGTGGAAACACTTTTCTTTTTAACCAAACATTACGCAATGGTGCCAACAAGCATCTCTTCGCGAGAGTCGCATGCAACATCGCTTAACAATCTATTAGACTGTAGCACAAACGCATCTAAATCGATGCATCGTATCCAACAATTGAGCTCTTGACAAAGGGTCTAACAACATTGTAACAGGTTATATTATAGTTACAGATTACATTGCATTCTCGTGATCGATCTTGTATTCCTTCCCCACCAATCCCGTATGAACACCTCAAACTAGTACGAATTTTAGTATAGCTAAGAGCAAACGGAGGAATCACACTTCTATGTATTGGGCTGCTAGAATTAGCGATATTTATATCCTTCGACCTGTCAAGGTAAATTGTGAAAGGAGCGTCATGTAGGTAACCAATAGTCGGTGTGTCGATCGCAAACAAATGCCACTATACTCTGTACCGAGAGTCCAAAAAACCCCTTAATCATTGTCGCCGTGCCTTCTGGCATGATACAATTAAAAGATTATAAAATCTTTTGTTACCAGTGCGCCTGACGGAGGAAACTCGATACAGGTTAACCTGGATTCCATGAAAATCCGTCAAGAGCGGTTTATATTAATATTTTCAATTATATATCCTCGGCATACGAAACAAATTTTAAGAGAGACGGAATTATATCGGGTAATACAATTTTTCGCTTAGAGCATGTGAGTGCGATAGTTAAAAAGTTTCTTTTCTATTTTTTCCTCGCATAATGGTCCTGAAAATTTTAATTTTTTAATAGAAACAATGCCTAATTATTGAAAATTACTTTCAATTTTGTTTTACGTTTTCCACATATTTTTTCAGTAATCATTGCAAAGCGTACTAAAGAGCAGCTATTAAGTTTTTCAAAATAAAAGTGTATTCACAGAAGATAGCTTATTCAGACAGGCTTTCTACTTATATTATGTAACGCGTTATGTAAAGTAACAAATGAGATGTTTCCCCCAATTTAATTAT]
[+] EMBL AL933763 [AATCGCCCCGAGGCTGAAAATGAAGGAAATAACGAAATGCGATAACGATGCAAGTTATGGAAGGAGATCGGTGGTATTGATTCAAGCAAGTGGAAACACTTTTCTTTTTAACCAAACATTACGCAATGGTGCCAACAAGCATCTCTTCGCGAGAGTCGCATGCAACATCGCTTAACAATCTATTAGACTGTAGCACAAACGCATCTAAATCGATGCATCGTATCCAACAATTGAGCTCTTGACAAAGGGTCTAACAACATTGTAACAGGTTATATTATAGTTACAGATTACATTGCATTCTCGTGATCGATCTTGTATTCCTTCCCCACCAATCCCGTATGAACACCTCAAACTAGTACGAATTTTAGTATAGCTAAGAGCAAACGGAGGAATCACACTTCTATGTATTGGGCTGCTAGAATTAGCGATATTTATATCCTTCGACCTGTCAAGGTAAATTGTGAAAGGAGCGTCATGTAGG ]
[+] EMBL BX620274 [ AGAGCAAACGGAGGAATCACACTTCTATGTATTGGGCTGCTAGAATTAGCGATATTTATATCCTTCGACCTGTCAAGGTAAATCGTGAAAGGAGCGTTATGTAGGTAACCAATAGTCGGTGTGTCGATCGCAAACAAATGCCACTATACTCTGTACCGAGAGTCCAAAAAACCCCTTAATCATTGTCGCCGTGCCTTCTGGCATGATACAATTAAAAGATTATAAAATCTTTTGTTACCAGTGCGCCTGACGGAGGAAACTCGATACAGGTTAACCTGGATTCCATGAAAATCCGTCAAGAGCGGTTTATATTAATATTTTCAATTATATATCCTCGGCATACGAAACAAATTTTAAGAGAGACGGAATTATATCGGGTAATACAATTTTTCGCTTAGAGCATGTGAGTGCGATAGTTAAAAAGTTTCTTTTCTATTTTTTCCTCGCATAATGGTCCTGAAAATTTTAATTTTTTAATAGAAACAATGCCTAATTATTGAAAATTACTTTCAATTTTGTTTTACGTTTTCCACATATTTTTTCAGTAATCATTGCAAAGCGTACTAAAGAGCAGCTATTAAGTTTTTCAAAATAAAAGTGTATTCACAGAAGATAGCTTATTCAGACAGGCTTTCTACTTATATTATGTAACGCGTTATGTAAAGTAACAAATGAGATGTTTCCCCCAATTTAATTAT]
consensusID : consensus_6162#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 768 fasta sequence
[CCGGATTGACGGTGGAGTAATGGAACGTCCAGAAAACTGCCCGGATAAGCTTTATGAACTAATGCGAATCTGTTGGCAACACCGAGCTTCGGCGAGACCTTCATTTATAGATATCATTCGTATGTTGTTACCCGATGCTAACGATAATTTTAAAAGAGTGTCTTTCTTTTTCTCGCCGGATGCTATGGATAATTCTATCCAGCCTGGAAATGAATTGTTAGATGATGTTACCGAACCGTTGCGTGCTAATGACGACGGTTTCGAAGAAGATGAGGATGATGCATATTCTATCGAATTGACGGACAGCCGATTAATGCACAATAATGGTCCTAAACCAGACATTCGTTCACCCCATTCACCTCAGAGGTGAGCAAACGCTCCAGGGTGCTCAGCATTCATATGGTTTACGAATATTTAGCCATGTTAAAAACAAACAAAACATATCGGCCAGCACCAGTCAGGAAAGCCGAAAATGAAGGAAATAACGAAATGCGATAACGATGCAAGTTATGGAAGGAGATCGGCGGTATTGATTAAGCAAGTGGAAACACTTTTCTTTTTAACCAAACATTACGCAATGGTGCCAACAAGCATCTCTTCGCGAGAGTCGCATGCAACATCGCTTAACAATCTATTAGACTGTAGCACAAACGCATCTAAATCGATGTATCGTATCCAACAATTGAGCTCTTGACAAAGGGTCTAAGAACATTGTAACAGGTTACATTATAGTTACAGATTACATTGCATTCTCGTGATCGATCTTGT]
[+] EMBL BM588253 [CCGGATTGACGGTGGAGTAATGGAACGTCCAGAAAACTGCCCGGATAAGCTTTATGAACTAATGCGAATCTGTTGGCAACACCGAGCTTCGGCGAGACCTTCATTTATAGATATCATTCGTATGTTGTTACCCGATGCTAACGATAATTTTAAAAGAGTGTCTTTCTTTTTCTCGCCGGATGCTATGGATAATTCTATCCAGCCTGGAAATGAATTGTTAGATGATGTTACCGAACCGTTGCGTGCTAATGACGACGGTTTCGAAGAAGATGAGGATGATGCATATTCTATCGAATTGACGGACAGCCGATTAATGCACAATAATGGTCCTAAACCAGACATTCGTTCACCCCATTCACCTCAGAGGTGAGCAAACGCTCCAGGGTGCTCAGCATTCATATGGTTTACGAATATTTAGCCATGTTAAAAACAAACAAAACATATCGGCCAGCACCAGTCAGGAAAGCCGAAAATGAAGGAAATAACGAAATGCGATAACGATGCAAGTTATGGAAGGAGATCGGCGGTATTGATTAAGCAAGTGGAAACACTTTTCTTTTTAACCAAACATTACGCAATGGTGCCAACAAGCATCTCTTCGCGAGAGTCGCATGCAACATCGCTTAACAATCT ]
[+] EMBL BX627988 [ GATGCTAACGATAATTTTAAAAGAGTGTCTTTCTTTTTCTCGCCGGATGCTATGGATAATTCTATCCAGCCTGGAAATGAATTGTTAGATGATGTTACCGAACCGTTGCGTGCTAATGACGACGGTTTCGAAGAAGATGAGGATGATGCATATTCTATCGAATTGACGGACAGCCGATTAATGCACAATAATGGTCCTAAACCAGACATTCGTTCACCCCATTCACCTCAGAGGTGAGCAAACGCTCCAGGGTGCTTAGCATTCATATGGTTTACGAATATTTAGCCATGTTAAAAACAAACAAAACATATCGGCCAGCACCAGTCAGGAAAGCCGAAAATGAAGGAAATGACGAAATGCGATAACGATGCAAGTTATGGAAGGAGATCGGTGGTATTGATTAAGCAAGTGGAAACACTTTTCTTTTTAACCAAACATTACGCAATGGTGCCAACAAGCATCTCTTCGCGAGAGTCGCATGCAACATCGCTTAACCATCTATTAGACTGTAGCACAAACGCATCTAAATCGATGTATCGTATCCAACAATTGAGCTCTTGACAAAGGGTCTAAGAACATTGTAACAGGTTACATTATAGTTACAGATTACATTGCATTCTCGTGATCGATCTTGT]
consensusID : consensus_6162#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 662 fasta sequence
[CCGCGGACGCGTGGGGGAAATGAATTGTTAGATGATTTTACCGAACCGTTGCGTGCTAATGACGACGGTTTCGAAGAAGATGAGGATGATGCATATTCTATCGAATTGACGGACAGCCGATTAATGCACAATAATGGTCCTAAACCAGACATTCGTTCACCCCATTCACCTCAGAGGTGAGCAAACGCTCCAGGGTGCTCAGCATTCATATGGTTTACGAATATTTAGCCATGTTAAAAACAAACAAAACATATCGGCCAGCACCAGTCAGGAAAGCCGAAAATGAAGGAAATAACGAAATGCGATAACGATGCAAGTTATGGAAGGAGATCGGCGGTATTGATTAAGCAAGTGGAAACACTTTTCTTTTTAACCAAACATTACGCAATGGTGCCAACAAGCATCTCTTCGCGAGAGTCGCATGCAACATCGCTTAACAATCTATTAGACTGTAGCACAAACGCATCTAAATATATGCATCGTATCCAACAATTGAGCTCTTGACAAAGGGTCTAAGAACATTGTAACAGGTTATATTATAGTTACAGATTACATTGCATTCTCGTGATCGATCTTGTATTCCTTCCCCACCAATCCGTATGAACACCTCAAACTAGTACGAATTTTAGTATAGCTAAGAGCAAACGGAGGAATCACACTTC]
[+] EMBL BM651178 [CCGCGGACGCGTGGGGGAAATGAATTGTTAGATGATTTTACCGAACCGTTGCGTGCTAATGACGACGGTTTCGAAGAAGATGAGGATGATGCATATTCTATCGAATTGACGGACAGCCGATTAATGCACAATAATGGTCCTAAACCAGACATTCGTTCACCCCATTCACCTCAGAGGTGAGCAAACGCTCCAGGGTGCTCAGCATTCATATGGTTTACGAATATTTAGCCATGTTAAAAACAAACAAAACATATCGGCCAGCACCAGTCAGGAAAGCCGAAAATGAAGGAAATAACGAAATGCGATAACGATGCAAGTTATGGAAGGAGATCGGCGGTATTGATTAAGCAAGTGGAAACACTTTTCTTTTTAACCAAACATTACGCAATGGTGCCAACAAGCATCTCTTCGCGAGAGTCGCATGCAACATCGCTTAACAATCTATTAGACTGTAGCACAAACGCATCTAAATATATGCATCGTATCCAACAATTGAGCTCTTGACAAAGGGTCTAAGAACATTGTAACAGGTTATATTATAGTTACAGATTACATTGCATTCTCGTGATCGATCTTGTATTCCTTCCCCACCAATCCGTATGAACACCTCAAACTAGTACGAATTTTAGTATAGCTAAGAGCAAACGGAGGAATCACACTTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6162#1 ------------------------------------------------------------
consensus_6162#2 ------------------------------------------------------------
consensus_6162#0 AATCGCCCCGAGGCTGAAAATGAAGGAAATAACGAAATGCGATAACGATGCAAGTTATGG 60
consensus_6162#1 ----------------------------------------------CCGGATTGACGGTG 14
consensus_6162#2 ------------------------------------------------------------
consensus_6162#0 AAGGAGATCGGTGGTATTGATTCAAGCAAGTGGAAACACTTTTCTTTTTAACCAAACATT 120
consensus_6162#1 GAGTAATGGAACGTCCAGAAAACTGCCCGGATAAGCTTTATGAACTAATGCGAATCTGTT 74
consensus_6162#2 ------------------------------------------------------------
consensus_6162#0 ACGCAATGGTGCCAACAAGCATCTCTTCGCGAGAGTCGCATGCAACATCGCTTAACAATC 180
consensus_6162#1 GGCAACACCGAGCTTCGGCGAGACCTTCATTTATAGATATCATTCG-----TATGTTGTT 129
consensus_6162#2 ------------------------------------------------------------
consensus_6162#0 TATTAGACTGTAGCACAAACGCATCTAAATCGATGCATCGTATCCAACAATTGAGCTCTT 240
consensus_6162#1 ACCCGATG--CTAACGATAATTTTAAAAGAGTGTCTTTCTTTT-----TCTCGCCGGATG 182
consensus_6162#2 ------------------------------------------------------------
consensus_6162#0 GACAAAGGGTCTAACAACA-TTGTAACAGGTTATATTATAGTTACAGATTACATTGCATT 299
consensus_6162#1 CT-ATGGATAATTCTATCCAGCCTGGAAATGAATTGTTAGATGATGTTACCGAACCGTTG 241
consensus_6162#2 CC-GCGGACGCGTGGG--------GGAAATGAATTGTTAGATGATTTTACCGAACCGTTG 51
consensus_6162#0 CTCGTGATCGATCTTGTATTCCTTCCCCACCAATC-CCGTATGAACACCTCAAACTAGTA 358
* * * *** **** * *** *
consensus_6162#1 CGTGCTAATGACGACGGTTTCGAAGAAGATGAGGATGATGCATATTCTATCGAATTGACG 301
consensus_6162#2 CGTGCTAATGACGACGGTTTCGAAGAAGATGAGGATGATGCATATTCTATCGAATTGACG 111
consensus_6162#0 CGAATT--TTAGTATAGCTAAGAGCAAACGGAGGA-ATCACAC-TTCTATGTATTGGGCT 414
** * * * * * * ** ** ***** ** ****** * * * *
consensus_6162#1 GACAGCCGATTAATGCACAATAATGGTCCTAAACCAGACAT--TCGTTCACCCCATTCAC 359
consensus_6162#2 GACAGCCGATTAATGCACAATAATGGTCCTAAACCAGACAT--TCGTTCACCCCATTCAC 169
consensus_6162#0 GCTAG--AATTAGCG-ATATTTATATCCTTCGACCTGTCAAGGTAAATTGTGAAAGGAGC 471
* ** **** * * * * ** * * *** * ** * * * *
consensus_6162#1 CTCAG--AGGTGAGCAAACGCTCCAGGGTGCTCAGCATTCATATGGTTTACGAATATTTA 417
consensus_6162#2 CTCAG--AGGTGAGCAAACGCTCCAGGGTGCTCAGCATTCATATGGTTTACGAATATTTA 227
consensus_6162#0 GTCATGTAGGTAACCAATAGTCGGTGTGTCGATCGCAAACAAATGCCACTATACTCTGTA 531
*** **** * *** * * ** *** ** *** * * * **
consensus_6162#1 GCCATGTTAAAAACAAACAAAACATATCGGCCAGCAC-CAGTCAGGAAAGCCGAAAATGA 476
consensus_6162#2 GCCATGTTAAAAACAAACAAAACATATCGGCCAGCAC-CAGTCAGGAAAGCCGAAAATGA 286
consensus_6162#0 CCGAGAGTCCAAAAAACCCCTTAATCATTGTCGCCGTGCCTTCTGGCATGATACAATTAA 591
* * * *** ** * ** * * * * ** ** * * ** * *
consensus_6162#1 AGGAA-ATAACGAAATGCGATAACGATGCAAGTTATGGAAGGAGATCGGCG-------GT 528
consensus_6162#2 AGGAA-ATAACGAAATGCGATAACGATGCAAGTTATGGAAGGAGATCGGCG-------GT 338
consensus_6162#0 AAGATTATAAAATCTTTTGTTACCAGTGCGCCTGACGGAGGAAACTCGATACAGGTTAAC 651
* ** **** * * ** * *** * * *** * * ***
consensus_6162#1 ATTGATT-------AAGCAAGTGGAAACACTTTTCTTTTTAACCAAACATTACGCAATGG 581
consensus_6162#2 ATTGATT-------AAGCAAGTGGAAACACTTTTCTTTTTAACCAAACATTACGCAATGG 391
consensus_6162#0 CTGGATTCCATGAAAATCCGTCAAGAGCGGTTTATATTAATATTTTCAATTATATATCCT 711
* **** ** * * * *** ** * **** *
consensus_6162#1 TGCCA-ACAAGCATCTCTTCGCGAGAGTCGCATGCAACATCGCTTAACA-ATCTATTAGA 639
consensus_6162#2 TGCCA-ACAAGCATCTCTTCGCGAGAGTCGCATGCAACATCGCTTAACA-ATCTATTAGA 449
consensus_6162#0 CGGCATACGAAACAAATTTTAAGAGAGACGGA-ATTATATCGGGTAATACAATTTTTCGC 770
* ** ** * ** ***** ** * * **** *** * * * ** *
consensus_6162#1 CTGTAGCACAAACGCATCTAAATCGATGTATCGTATCCAACAATTGAGCTCTTGACAAAG 699
consensus_6162#2 CTGTAGCACAAACGCATCTAAATATATGCATCGTATCCAACAATTGAGCTCTTGACAAAG 509
consensus_6162#0 TTAGAGCATGTGAGTGCGATAGTTAAAAAGTT-TCTTTTCTATTTTTTCCTCGCATAATG 829
* **** * * * * * * * * ** * * ** *
consensus_6162#1 GGTCTAAGAACATTG------TAACAGGT----TACATTATAGTTACAGATTACATTGCA 749
consensus_6162#2 GGTCTAAGAACATTG------TAACAGGT----TATATTATAGTTACAGATTACATTGCA 559
consensus_6162#0 GTCCTGAAAATTTTAATTTTTTAATAGAAACAATGCCTAATTATTGAAAATTACTTTCAA 889
* ** * ** ** *** ** * * ** ** * ***** ** *
consensus_6162#1 TTCTCGTGATCGATCTT---GT-------------------------------------- 768
consensus_6162#2 TTCTCGTGATCGATCTT---GTATTCCTTCCCCACCAATCCGTATGAACACCTCAAACTA 616
consensus_6162#0 TTTTGTTTTACGTTTTCCACATATTTTTTCAGTAATCATTGCAAAGCGTACTAAAGAGCA 949
** * * ** * * *
consensus_6162#1 ------------------------------------------------------------
consensus_6162#2 GTACGAATTTTAGTATAGCTAAGAGCAAACGGAGGAATCACACTTC-------------- 662
consensus_6162#0 GCTATTAAGTTTTTCAAAATAAAAGTGTATTCACAGAAGATAGCTTATTCAGACAGGCTT 1009
consensus_6162#1 ------------------------------------------------------------
consensus_6162#2 ------------------------------------------------------------
consensus_6162#0 TCTACTTATATTATGTAACGCGTTATGTAAAGTAACAAATGAGATGTTTCCCCCAATTTA 1069
consensus_6162#1 -----
consensus_6162#2 -----
consensus_6162#0 ATTAT 1074
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||