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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6164#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1404 fasta sequence
[CCGGCCCCATGTCGATCGGCAGGACGAGCCGGACGACGATACGCTCATGTCGGCCGATGAGCTGTTGACGGCGGCAAGCGTCCCGGGTGCAGCGAGCGAAATAACGATGCAACCGGTGGGTGGGGTGGTGGCGGTCGATGCCATCGGTCTGAGCGGTATCGAGCCAAGCTTGGCGCTACCCATCGGGCCTGATTTGGCCGGCATTAATACACCCTTTCTAGTCAATAACATTGCGCCCGGGCTGCCGCTAGCGAACGAGATACGGGAGATCCGTGCCGGGTGTAGAAGAATTCGCGAAGAACGGCCGGGGTTTTCCATCATATCGAGCGTGAATGAGCTGCTATCAAGGTTTCTTCAGGATGATCAGCAGCGCGAGCTGA-CCCTGCACGATGTGGACAAAGCGGAGCACGACAAGCTGCAGGATCTGTGCAAGCTCTACTCGCTGAATGCACAGCAGCTGAGCGAAAATGGCAGTGTGGTGATGCTGAGCAAAACCAGCAATACGATGCAATCGGTACGGATCGATCAGTCCAACTTGCCGAAACGGCTTGGAGATTTCAAACGGCGCTGCTACGGCAATGCGGAAGCGCTACAATTTCACGACGGTGCTACCAGCTAAACAATGACTATGGCTCCCATCACCGATACGGCACCGAACGGAGCTTTCGAGCGTTAG-AAACCGAGTTTGGA--CCGGGTTTTTGTGCCGGCGTGTTTACAAAACTGTAAGCGACAGCTTTGAAAATTGAAACTGTAAAGATAGCGAGCAAATATACAAGTGAATTAGTGTAGAATTAGGCGAAGCGCTTTTAGCTTTTGTTCAGTCTCACGCGCGCACAACACTGTTGGGAGGCTCGTTGCGTGTAGAGTTAGCATAAGCGAGTTAACAAACGACGACACAACACACCGACGAACAACAGGATTTGATTGCATCATGTCCTATGGACGAAGAAGAGGATAGAAGATGGAATAGACAAAAAAAAAACACCCGAGACGGACGAAGGTAGTTCCACTGGAGAAAATAACCACTATGTA-CAGTTAGCATGTAAGAGAGTTACGTGTAAGTAAGGTGGGTGTGGTGTCTCGAAGCTAACCACACAGTTGCGCACTTTGCCTGCGGCCATTCGCTTCACAAACGCTTGCCAGAAGCCGAGAAAGGAGGAGTTAGGAGTTTGTTCCCTTTGCGCAACAACAACAAACAAGCAAACAAACAAAACAAAAAACCTTCGCACCGTTACTAAACACAGAACGCGCTAGAGTTTTGTGCCGTTGTTAGGTTAGCAAGTTTTTAATTCACGTTAGCGGAAAGGTTTTGCTACTTTTAATGCGCAAGATTCTCTGTACAGTTGCAACGGCAGCAATGGACAAGATGCTAAGCAGCGCGAAAATGAGGAAAATTAATAAACC]
[+] EMBL BM585396 [CCGGCCCCATGTCGATCGGCAGGACGAGCCGGACGACGATACGCTCATGTCGGCCGATGAGCTGTTGACGGCGGCAAGCGTCCCGGGTGCAGCGAGCGAAATAACGATGCAACCGGTGGGTGGGGTGGTGGCGGTCGATGCCATCGGTCTGAGCGGTATCGAGCCAAGCTTGGCGCTACCCATCGGGCCTGATTTGGCCGGCATTAATACACCCTTTCTAGTCAATAACATTGCGCCCGGGCTGCCGCTAGCGAACGAGATACGGGAGATCCGTGCCGGGTGTAGAAGAATTCGCGAAGAACGGCCGGGGTTTTCCATCATATCGAGCGTGAATGAGCTGCTATCAAGGTTTCTTCAGGATGATCAGCAGCGCGAGCTGA CCCTGCACGATGTGGACAAAGCGGAGCACGACAAGCTGCAGGATCTGTGCAAGCTCTACTCGCTGAATGCACAGCAGCTGAGCGAAAATGGCAGTGTGGTGATGCTGAGCAAAACCAGCAATACGATGCAATCGGTACGGATCGATCAGTCCAACTTGCCGAAACGGCTTGGAGATTTCAAACGGCGCTGCTACGGCAATGCGGAAGCGCTACAATTTCACGACGGTGCTACCAGCTAAACAATGACTATGGCTCCCATCACCGATACGGCACCGAACGGAGCTTTCGAGCGTTAGAAAACCGAGTTTGGAACCCGGGTT ]
[+] EMBL BM593002 [ ccgGCTTGGCGCTACCCATCGGGCCTGATTTGGCCGGCATTAATACACCCTTTCTAGTCAATAACATTGCGCCCGGGCTGCCGGTGGGGAACGAGATACGGGAGATCCGTGCCGGGTGTAGAAGAATTCGCGAAGAACGGCCGGGGTTTTCCATCATATCGAGCGTGAATGAGCTGCTATCAAGGTTTCTTCAGGATGATCAGCAGCGCGAGCTGA CCCTGCACGATGTGGACAAAGCGGAGCACGACAAGCTGCAGGATCTGTGCAAGCTCTACTCGCTGAATGCACAGCAGCTGAGCGAAAATGGCAGTGTGGTGATGCTGAGCAAAACCAGCAATACGATGCAATCGGTACGGATCGATCAGTCCAACTTGCCGAAACGGCTTGGAGATTTCAAACGGCGCTGCTACGGCAATGCGGAAGCGCTACAATTTCACGACGGTGCTACCAGCTAAACAATGACTATGGCTCCCATCACCGATACGGCACCGAACGGAGCTTTCGAGCGTTAG AAACCGAGTTTGGA CCGGGTTTTTGTGCCGGCGTGTTTACAAAACTGTAAACGACAGCTTTGAAAATTGAAACTGTAAAGATAGCGAGCAAATATACAAGTGAATTAGTGTAGAATTAGGCGAAGCGCTTCTAGCTTTTGTTCAGCCCCACGCGCGCACAACACTGT ]
[+] EMBL CNS09N9W [ TAACATTGCGCCCGGGCTGCCGCTAGCGAACGAGATACGGGAGATCCGTGCCGGGTGTAGAAGAATTCGCGAAGAACGGCCGGGGTTTTCCATCATATCGAGCGTGAATGAGCTGCTATCAAGGTTTCTTCAGGATGATCAGCAGCGCGAGCTGATCCCTGCACGATGTGGACAAAGCGGA CACGACAAGCTGCAGGATCTGTGCAAGCTCTACTCGCTGAATGCACAGCAGCTAAGCGAAAATGGCAGTGTGGTGATGCTGAGCAAAACCAGCAACACGATGCAATCGGTACGGATCGATCAGTCCAACTTACCGAAACGGCTTGGAGATTTCAAACGGCGCTGCTACGGCAATGCGGAAGCGCTACAATTTCACGACGGTGCTACCAGCTAAACAATGACTATGGCTACCATCACCGATACGACACCGAACGGAGCTTTCGAGCGTTAG AAACCGAGTTTGGA CCGGGTTTTTGTGCCGGCGTGTTTACAAAACTGTAAGCGACAGCTTTGAAAATTGAAACTGTAAAGATAGCGAGCAAATATACAAGTGAATTAGTGTAGAATTAGGCGAA CGCTTTTAGCTTTTGTTCAGTCTCACGCGCGCACAACACTGTTGGGAGGCTCGTTGCGTGTAGAGTTAGCATAAGCGAGTTAACAAACGACGACACAACACACCGACGAACAACAGGATTTGATTGCATCATGTCCTATGGACGAAGAAGAGGATAGAAGATGGAATAGACAAAAAAAAAACACCCGAGACGGACGAAGGTAGTTCCACTGGAGAAAATAACCACTATGTA CAGTTAGCATGTAAGAGAGTTACGTGTAAGTAAGGTGGGTGTGGTGTCTCGAAGCTAACCACACAGTTGCGCACTTTGCCTGCGGCCATTCGCTTCACAAACGCTTGCCAGAAGCCGAGAAAGGAGGAGTTAGGAGTTTGTTCCCTTTGCG ]
[-] EMBL CNS09N9X [ TCGGTACGGATCGATCAGTCCAACTTACCGAAACGGCTTGGAGATTTCAAACGGGGCTGCTACGGCAATGCGGAAGCGCTACAATTTCACGACGGTGCTACCAGCTAAACAATGACTATGGCTACCATCACCGATACGACACCGAACGGGGCTTTCGAGCGTTAG AAACCGAGTTTGGA CCGGGTTTTTGTGCCGGCGTGTTTACAAAACTGTAAGCCACAGCTTTGAAAATTGAAACTGTAAAGATAGCGAGCAAATATACAAGTGAATTAGTGTAGAATTAGGCAAAGCGCTTTTAGCTTTTGTTCAATTTAACGGGCGCACAAAACTGTTGGGAGGCTCGTTGCGTGTAGAGTTAGCATAAGCGAGTTAACAAACGACGACACAACACACCGACGAACAACAGGATTTTATTGCATCATGTCCTATGGACGAAGAAGAGGATAGAAGATGGGATAGACAAAAAAAAAACACCCGAGACGGACGAAGGTAGTTCCACTGGAGAAAATAACCACTATGTATCAGTTAGCATGTAAGAGAGTAACGTGTAAGTAAGGTGGGTGTGGTGTCTCGAAGCTAACCACACAGTTGCGCACTTT CTGCGGCCATTCGCTTCACAAACGCTTGCCAGAAGCCGAGAAAGGAGGAGTTAGGAGTTTGTTCCCTTTGCGCAACAACAACAAACAAGCAAACAAACAAAACAAAAAACCTTCGCACCGTTACTAAACACAGAACGCGCTAGAGTTTTGTGCCGTTGTTAGGTTAGCAAGTTTTTAATTCACGTTAGCGGAAAGGTTTTGCTACTTTTAATGCGCAAGATTCTCTGTACAGTTGCAACGGCAGCAATGGACAAGATGCTAAGCAGCGCGAAAATGAGGAAAATTAATAAACC]
consensusID : consensus_6164#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 301 fasta sequence
[AGAGACCCGGGTATCTNAAGCCACAGCTTNTGCGCTAACCATCGAGGCCCTGATATTTGGCGCCGGGCNATTTAATTANCACACCCCTTTTCTAGTCAATAACATTGCGCCCGGGCTGGCGCTAGCGAACGAGATACGGGAGATCCGTGCCGGGGTGTAGAAGAATTCGCGAAGAACGGCCGGGGTTTTCCATCCATATCGAGCGTGAAATTGAGCTGCTNATCCAAAGGGGTATNNCTTTCCAGGGGAATGCATCAGCAGANCTGCGANGCTGACCCTGGCACGATGTGGACAAAGCGGA]
[+] EMBL AL933699 [AGAGACCCGGGTATCTNAAGCCACAGCTTNTGCGCTAACCATCGAGGCCCTGATATTTGGCGCCGGGCNATTTAATTANCACACCCCTTTTCTAGTCAATAACATTGCGCCCGGGCTGGCGCTAGCGAACGAGATACGGGAGATCCGTGCCGGGGTGTAGAAGAATTCGCGAAGAACGGCCGGGGTTTTCCATCCATATCGAGCGTGAAATTGAGCTGCTNATCCAAAGGGGTATNNCTTTCCAGGGGAATGCATCAGCAGANCTGCGANGCTGACCCTGGCACGATGTGGACAAAGCGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6164#0 CCGGCCCCATGTCGATCGGCAGGACGAGCCGGACGACGATACGCTCATGTCGGCCGATGA 60
consensus_6164#1 ------------------------------------------------------------
consensus_6164#0 GCTGTTGACGGCGGCAAGCGTCCCGGGTGCAGCGAGCGAAATAACGATGCAACCGGTGGG 120
consensus_6164#1 ------------------------------------------------------------
consensus_6164#0 TGGGGTGGTGGCGGTCGATGCCATCGGTCTGAGCGGTATCGAGCCAAGCT-TGGCGCTAC 179
consensus_6164#1 AGAGACCCGGGTATCTNAAGCCA-CAGCTTNTGCGCTAACCATCGAGGCCCTGATATTTG 59
* * ** * **** * * * *** ** * * * * ** ** *
consensus_6164#0 CCATCGGGCCTGATTTGGCCGGCATTAATACACCCTTTCTAGTCAATAACATTGCGCCCG 239
consensus_6164#1 GCGCCGGGCN--ATTTAATTANCAC----ACCCCTTTTCTAGTCAATAACATTGCGCCCG 113
* ***** **** ** ** ** *************************
consensus_6164#0 GGCTGCCGCTAGCGAACGAGATACGGGAGATCCGTGCCGGG-TGTAGAAGAATTCGCGAA 298
consensus_6164#1 GGCTGGCGCTAGCGAACGAGATACGGGAGATCCGTGCCGGGGTGTAGAAGAATTCGCGAA 173
***** *********************************** ******************
consensus_6164#0 GAACGGCCGGGGTTTTCCATC-ATATCGAGCGTGAA--TGAGCTGCTA--TCAAGG---- 349
consensus_6164#1 GAACGGCCGGGGTTTTCCATCCATATCGAGCGTGAAATTGAGCTGCTNATCCAAAGGGGT 233
********************* ************** ********* *** *
consensus_6164#0 -TTTCTTC-----AGGATG-ATCAGCAGCGC----GAGCTGACCCTG-CACGATGTGGAC 397
consensus_6164#1 ATNNCTTTCCAGGGGAATGCATCAGCAGANCTGCGANGCTGACCCTGGCACGATGTGGAC 293
* *** * *** ******** * ********** ************
consensus_6164#0 AAAGCGGAGCACGACAAGCTGCAGGATCTGTGCAAGCTCTACTCGCTGAATGCACAGCAG 457
consensus_6164#1 AAAGCGGA---------------------------------------------------- 301
********
consensus_6164#0 CTGAGCGAAAATGGCAGTGTGGTGATGCTGAGCAAAACCAGCAATACGATGCAATCGGTA 517
consensus_6164#1 ------------------------------------------------------------
consensus_6164#0 CGGATCGATCAGTCCAACTTGCCGAAACGGCTTGGAGATTTCAAACGGCGCTGCTACGGC 577
consensus_6164#1 ------------------------------------------------------------
consensus_6164#0 AATGCGGAAGCGCTACAATTTCACGACGGTGCTACCAGCTAAACAATGACTATGGCTCCC 637
consensus_6164#1 ------------------------------------------------------------
consensus_6164#0 ATCACCGATACGGCACCGAACGGAGCTTTCGAGCGTTAGAAACCGAGTTTGGACCGGGTT 697
consensus_6164#1 ------------------------------------------------------------
consensus_6164#0 TTTGTGCCGGCGTGTTTACAAAACTGTAAGCGACAGCTTTGAAAATTGAAACTGTAAAGA 757
consensus_6164#1 ------------------------------------------------------------
consensus_6164#0 TAGCGAGCAAATATACAAGTGAATTAGTGTAGAATTAGGCGAAGCGCTTTTAGCTTTTGT 817
consensus_6164#1 ------------------------------------------------------------
consensus_6164#0 TCAGTCTCACGCGCGCACAACACTGTTGGGAGGCTCGTTGCGTGTAGAGTTAGCATAAGC 877
consensus_6164#1 ------------------------------------------------------------
consensus_6164#0 GAGTTAACAAACGACGACACAACACACCGACGAACAACAGGATTTGATTGCATCATGTCC 937
consensus_6164#1 ------------------------------------------------------------
consensus_6164#0 TATGGACGAAGAAGAGGATAGAAGATGGAATAGACAAAAAAAAAACACCCGAGACGGACG 997
consensus_6164#1 ------------------------------------------------------------
consensus_6164#0 AAGGTAGTTCCACTGGAGAAAATAACCACTATGTACAGTTAGCATGTAAGAGAGTTACGT 1057
consensus_6164#1 ------------------------------------------------------------
consensus_6164#0 GTAAGTAAGGTGGGTGTGGTGTCTCGAAGCTAACCACACAGTTGCGCACTTTGCCTGCGG 1117
consensus_6164#1 ------------------------------------------------------------
consensus_6164#0 CCATTCGCTTCACAAACGCTTGCCAGAAGCCGAGAAAGGAGGAGTTAGGAGTTTGTTCCC 1177
consensus_6164#1 ------------------------------------------------------------
consensus_6164#0 TTTGCGCAACAACAACAAACAAGCAAACAAACAAAACAAAAAACCTTCGCACCGTTACTA 1237
consensus_6164#1 ------------------------------------------------------------
consensus_6164#0 AACACAGAACGCGCTAGAGTTTTGTGCCGTTGTTAGGTTAGCAAGTTTTTAATTCACGTT 1297
consensus_6164#1 ------------------------------------------------------------
consensus_6164#0 AGCGGAAAGGTTTTGCTACTTTTAATGCGCAAGATTCTCTGTACAGTTGCAACGGCAGCA 1357
consensus_6164#1 ------------------------------------------------------------
consensus_6164#0 ATGGACAAGATGCTAAGCAGCGCGAAAATGAGGAAAATTAATAAACC 1404
consensus_6164#1 -----------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||