These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6165#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 828 fasta sequence [CAGAATCGCNCACGAGGACTAATTACATATTGGCGATGCAAAACGGGCGTGGATGATGATAGGTCAGGAAGTGTAGTAATGTGGGGAGTGTGTGGGCAGATGTTGCGTAGTAATACAGCAAAACCAACTACTCAGGCACAGTCACGGGGCGCGACGCGAAGAATAGGTTGCTGGATTGTATGGTGAATTTTATTAAAATATTAATGAATTATCCCGTGTTCGACGTGTTGTTAGTCAATAGGTTTAACAAGGTACTTTCCATCTAACCGTGTTCTGCTAGAGGAAAGAGCAAAAAGAAGGAGATGGATAGAAAACGTTTCGTGAACAAAAATATTTCAGTTCCTTTCAATCACTACGATTTTTCATGAATTTTATCCTTGGATTTTGGATATGGTTTGCCAGCCATTGAATGCCGCAATTCAGTTTCATCAAATATTGTAACGTGTTTGAGACGTGAAATACAGGAACTAGAGTCAGAAATCGTACCAGGACAGGTTAGTGTTTATTTATTTCGTTCATACTTCACACAGTAGTGTGTGTCCTTTCGAATATTAACGACGTGTTGGTGTCAGTTAACAAGAAGAATAGAAATAAATTGCNTACCCGGCATATTAGTTCCTCGNTCCAATTAGAGCGTACAAGTTAGAAGTGTATAAGAAAACAAAATTGGAAACGTTAGATATGGTTTCTAGTTTGAACGGGATTGGCTGCAAGAGGTGCCGGAGGTTAGTTAGTATTTTCCCCGAAGGGGTTTTTCCTCACCTTTNACCGGTTNCGGAATGCNNAAATACCGAATNNAACGGGTGGTGAAATTAGACACAACGCTCT] [+] EMBL BX467388 [CAGAATCGCNCACGAGGACTAATTACATATTGGCGATGCAAAACGGGCGTGGATGATGATAGGTCAGGAAGTGTAGTAATGTGGGGAGTGTGTGGGCAGATGTTGCGTAGTAATACAGCAAAACCAACTACTCAGGCACAGTCACGGGGCGCGACGCGAAGAATAGGTTGCTGGATTGTATGGTGAATTTTATTAAAATATTAATGAATTATCCCGTGTTCGACGTGTTGTTAGTCAATAGGTTTAACAAGGTACTTTCCATCTAACCGTGTTCTGCTAGAGGAAAGAGCAAAAAGAAGGAGATGGATAGAAAACGTTTCGTGAACAAAAATATTTCAGTTCCTTTCAATCACTACGATTTTTCATGAATTTTATCCTTGGATTTTGGATATGGTTTGCCAGCCATTGAATGCCGCAATTCAGTTTCATCAAATATTGTAACGTGTTTGAGACGTGAAATACAGGAACTAGAGTCAGAAATCGTACCAGGACAGGTTAGTGTTTATTTATTTCGTTCATACTTCACACAGTAGTGTGTGTCCTTTCGAATATTAACGACGTGTTGGTGTCAGTTAACAAGAAGAATAGAAATAAATTGCNTACCCGGCATATTAGTTCCTCGNTCCAATTAGAGCGTACAAGTTAGAAGTGTATAAGAAAACAAAATTGGAAACGTTAGATATGGTTTCTAGTTTGAACGGGATTGGCTGCAAGAGGTGCCGGAGGTTAGTTAGTATTTTCCCCGAAGGGGTTTTTCCTCACCTTTNACCGGTTNCGGAATGCNNAAATACCGAATNNAACGGGTGGTGAAATTAGACACAACGCTCT] consensusID : consensus_6165#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 799 fasta sequence [GATCGCCGAGGNGGCAGTTAGTGTTATTTATTTCGTCATACTTCACACAGGTAGTGTGTGTCCTTTCGAATATTAACGACGTGTGGTGTCAGTTAACAAAAAATAAAAAATAAATTGCATACCGGCATATTAGTTCCTCGTCCAATAGAGCGTACAAAGTTAGAGTGTATAGAAACAAATTGAAACGTTTANGANATGTTTCTAGTTTGAACGGATTGGGCTTGGAAGAGGTGCGGAGGTAGTTTAGTATTTCCCGAGGGTTTTCCTCACCTTGACCGTTTCCGATGCTAATACGATAGAAAGGTTGTAGAAATTAAGACAACACTCTAATCAATAGGAACTAACGTGTAGCTCAACACCCCACCAATGCGCCAGACGCAAAGGTGCGAGGATAACACCGGAATGTGGCTGTCGTCCTCGGCGTCCTGTTTAGCTAGGAAGGATAGGAAGGAGTGAGTTTATGATGCGTGATGATGGCACCTCTGCTTGCAGAAGGTAACATTAGTAGATGGGCAGCGCTCCCTTCACAACTCACCTAGACGGAGTACTTCAGCAGAATCTAGGCTATGTATGGAATCCATAAATACAAGAATTTTATCGACTATATCATAAGGCAACTAATAGAGAAAGACACCACATACCAACCACAAGTGCGAGAGGTAACATAATACACTCTCACACTCACACTCACACAGCAAAAGCAAACCAACAAACAAGCATAAGGAAAGGGATTTGGGACGTTAGAGAGACTTAGTGTCACGTAATTAACAACTTTCAAGTCAAAATTTGAATTTTGAAA] [+] EMBL AL930060 [GATCGCCGAGGNGGCAGTTAGTGTTATTTATTTCGTCATACTTCACACAGGTAGTGTGTGTCCTTTCGAATATTAACGACGTGTGGTGTCAGTTAACAAAAAATAAAAAATAAATTGCATACCGGCATATTAGTTCCTCGTCCAATAGAGCGTACAAAGTTAGAGTGTATAGAAACAAATTGAAACGTTTANGANATGTTTCTAGTTTGAACGGATTGGGCTTGGAAGAGGTGCGGAGGTAGTTTAGTATTTCCCGAGGGTTTTCCTCACCTTGACCGTTTCCGATGCTAATACGATAGAAAGGTTGTAGAAATTAAGACAACACTCTAATCAATAGGAACTAACGTGTAGCTCAACACCCCACCAATGCGCCAGACGCAAAGGTGCGAGGATAACACCGGAATGTGGCTGTCGTCCTCGGCGTCCTGTTTAGCTAGGAAGGATAGGAAGGAGTGAGTTTATGATGCGTGATGATGGCACCTCTGCTTGCAGAAGGTAACAT ] [+] EMBL BX610156 [ TTTCTAGTTTGAACGGATT GGCT G AGAGGTGCGGAGGTAGTTTAGTATTTCCCGAGGGTTTTCCTCACCTTGACCGTTTCCGATGCTAATACGATAGAAAGGTTGTAGAAATTAAGACAACACTCTAATCAATAGGAACTAACGTGTAGCTCAACACCCCACCAATGCGCCAGACGCAAAGGTGCGAGGATAACACCGGAATGTGGCTGTCGTCCTCGGCGTCCTGTTTAGCTAGGAAGGATAGGAAGGAGTGAGTTTATGATGCGTGATGATGGCACCTCTGCTTGCAGAAGGTAACATTAGTAGATGGGCAGCGCTCCCTTCACAACTCACCTAGACGGAGTACTTCAGCAGAATCTAGGCTATGTATGGAATCCATAAATACAAGAATTTTATCGACTATATCATAAGGCAACTAATAGAGAAAGACACCACATACCAACCACAAGTGCGAGAGGTAACATAATACACTCTCACACTCACACTCACACAGCAAAAGCAAACCAACAAACAAGCATAAGGAAATGGATTTGGGACGTTAGAGAGACTTAGTGTCACGTAATTAACAACTTTCAAGTCAAA ] [-] EMBL BX614997 [ CTAGGAAGGATAGGAAGGAGTGAGTTTATGATGCGTGATGATGGCACCTCTGCTTGCAGAAGGTAACATTAGTAGATGGGCAGCGCTCCCTTCACAACTCACCTAGACGGAGTACTTCAGCAGAATCTAGGCTATGTATGGAATCCATAAATACAAGAATTTTATCGACTATATCATAAGGCAACTATTAGAGAAAGACACCACATACCAACCACAAGTGCGAGAGGTAACATAATACACTCTCACACTCACACTCACACAGCAAAAGCAAACCAACAAACAAGCATAAGGAAAGGGATTTGGGACGTTAGAGAGACTTAGTGTCACGTAATTAATAACTTTCAAGTCAAAATTTGAATTTTGAAA] [+] EMBL BX616011 [ CATAAGGCAACTAATAGAGAAAGACACCACATACCAACCACAAGGGCGAGAGGGAACATAATACACTCTCACACTCACACTCACACAGCAAAAGCAAACCAACAAACAAGCATAAGGAAAGGGAATTGGGACGTTAGAGAGACT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6165#0 CAGAATCGCNCACGAGG--ACTAATTACATAT-TGGCGATGCAAAACGGGCGTGGATGAT 57 consensus_6165#1 ---GATCGCCGAGGNGGCAGTTAGTGTTATTTATTTCGTCATACTTCACACAGGTAGTGT 57 ***** * * ** ** * ** * * ** * * * * * * consensus_6165#0 GATAGGTCAGGAAGTGTAGTAATGTGGGGAGTGTGTGGGCAGATGTTGCGTAGTAA---- 113 consensus_6165#1 GTGTCCTTTCGAATATTAACGACGTGTGGTGTCAGTTAACAAAAAATAAAAAATAAATTG 117 * * *** ** * *** ** ** ** ** * * * *** consensus_6165#0 --TACAGCAAAACCAACTACTCA---GGCACAGT-CACGGGGCGCGACGCGAAGAATAGG 167 consensus_6165#1 CATACCGGCATATTAGTTCCTCGTCCAATAGAGCGTACAAAGTTAGA-GTGTATAGAAAC 176 *** * * * * * *** * ** ** * ** * * * * * consensus_6165#0 TTGCTGGATTGTATGGTGAATTTTATTAAAATATTAATGAATTAT-CCCGTGTTCGACGT 226 consensus_6165#1 AAATTGAAACGTTTANGANATGTTTCTA--GTTTGAACGGATTGGGCTTGGAAGAGGTGC 234 ** * ** * ** ** ** * * ** * *** * * * * consensus_6165#0 GTTGTTAGTCAATAGGTTTAACAAGGTACTTTCCATCT-AACCGTGTTCTGCTAGAGGAA 285 consensus_6165#1 GGAGGTAGTTTAGTATTTCCCGAGGGTTTTCCTCACCTTGACCGT-TTCCGATGCTAATA 293 * * **** * ** * *** * ** ** ***** *** * * * consensus_6165#0 AGAGCAAAAAGAAGGAGATGGATAGAAAACGTTTCG-TGAACAAAAATATTTCAGTTCCT 344 consensus_6165#1 CGATAGAAAGGTTGTAGAAATTAAGACAACACTCTAATCAATAGGAACTAACGTGTAGCT 353 ** *** * * *** *** *** * * ** * ** ** ** consensus_6165#0 TTCAATCACTACGATTTTTCATGAATTTTATCCTTGGATTTTGGATATGGTTTGCCAGCC 404 consensus_6165#1 CAACACCCCACCAATGCGCCAGACGCAAAGGTGCGAGGATAACACCGGAATGTGGCTGTC 413 * * * * ** ** * * * ** * * * consensus_6165#0 ATTGAATGC-CGCAATTCAGTTTCATCAAATATT--GTAACGTGTTTGAGACGTGAAAT- 460 consensus_6165#1 GTCCTCGGCGTCCTGTTTAGCTAGGAAGGATAGGAAGGAGTGAGTTTATGATGCGTGATG 473 * ** * ** ** * *** * * * **** ** * * ** consensus_6165#0 ACAGGAACTAGAGTCAGAAATCGTACCAGGACAGGTTAGTGTTTATTTATTTCGTTCATA 520 consensus_6165#1 ATGGCACCTCTGCTTGCAGAAGGTAACATTA---GTAGATGGGCAGC-GCTCCCTTCACA 529 * * * ** * * * *** ** * ** ** * * * **** * consensus_6165#0 CTTCACACAGTAGTGTGTGTCCTTTCGAATATTAACGACGTGTTGGTGTCAGTTAACAAG 580 consensus_6165#1 ACTCACCTAGACGGAGTACTTCAGCAGAATCTAGGCTATGTAT-GGAATC------CATA 582 **** ** * * * **** * * * ** * ** ** ** consensus_6165#0 AAGAATAGAAATAAATTGCNTACCCGGCATATTAGTTCCTCGNTCCAATTAGAGCGTACA 640 consensus_6165#1 AATACAAGAATTTTATCGACTATATCATAAGGCAACTAATAGAGAAAGACACCACATACC 642 ** * **** * ** * ** * * * * * * * * *** consensus_6165#0 AGTTAGAAGTGTATAAGAAAACAAAATTGGAAACGTTAGATATGGTTTCTAGTTTGAACG 700 consensus_6165#1 AACCACAAGTGCGAGAGGTAACATAATACACTCTCACACTCACACTCACACAGCAAAAGC 702 * * ***** ** **** *** * * * * ** consensus_6165#0 GGATTGGCTGCAAGAGGTGCCGGAGGTTAGTTAGTATTTTCCCCGAAGGGGTTTTTCCTC 760 consensus_6165#1 AAACCAACAAACAAGCATAAGGAAAGGGATTTGGGACGTT----AGAGAGACTTAGTGTC 758 * * * * * * * * ** * * ** ** * ** ** consensus_6165#0 ACCT--TTNACCGGTTNCGGAATGCNNAAATACCGAATNNAACGGGTGGTGAAATTAGAC 818 consensus_6165#1 ACGTAATTAACAACTTTC---AAGTCAAAATTTGAATTTTGAAA---------------- 799 ** * ** ** ** * * * **** * * * consensus_6165#0 ACAACGCTCT 828 consensus_6165#1 ---------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||