cluster # 6165

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Anopheles gambiae
cluster # 6165 cluster # 6165 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6165#0 length = 828 sequences # 1

consensus_6165#1 length = 799 sequences # 4

consensusID : consensus_6165#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 828
fasta sequence

                              [CAGAATCGCNCACGAGGACTAATTACATATTGGCGATGCAAAACGGGCGTGGATGATGATAGGTCAGGAAGTGTAGTAATGTGGGGAGTGTGTGGGCAGATGTTGCGTAGTAATACAGCAAAACCAACTACTCAGGCACAGTCACGGGGCGCGACGCGAAGAATAGGTTGCTGGATTGTATGGTGAATTTTATTAAAATATTAATGAATTATCCCGTGTTCGACGTGTTGTTAGTCAATAGGTTTAACAAGGTACTTTCCATCTAACCGTGTTCTGCTAGAGGAAAGAGCAAAAAGAAGGAGATGGATAGAAAACGTTTCGTGAACAAAAATATTTCAGTTCCTTTCAATCACTACGATTTTTCATGAATTTTATCCTTGGATTTTGGATATGGTTTGCCAGCCATTGAATGCCGCAATTCAGTTTCATCAAATATTGTAACGTGTTTGAGACGTGAAATACAGGAACTAGAGTCAGAAATCGTACCAGGACAGGTTAGTGTTTATTTATTTCGTTCATACTTCACACAGTAGTGTGTGTCCTTTCGAATATTAACGACGTGTTGGTGTCAGTTAACAAGAAGAATAGAAATAAATTGCNTACCCGGCATATTAGTTCCTCGNTCCAATTAGAGCGTACAAGTTAGAAGTGTATAAGAAAACAAAATTGGAAACGTTAGATATGGTTTCTAGTTTGAACGGGATTGGCTGCAAGAGGTGCCGGAGGTTAGTTAGTATTTTCCCCGAAGGGGTTTTTCCTCACCTTTNACCGGTTNCGGAATGCNNAAATACCGAATNNAACGGGTGGTGAAATTAGACACAACGCTCT]

[+] EMBL BX467388             [CAGAATCGCNCACGAGGACTAATTACATATTGGCGATGCAAAACGGGCGTGGATGATGATAGGTCAGGAAGTGTAGTAATGTGGGGAGTGTGTGGGCAGATGTTGCGTAGTAATACAGCAAAACCAACTACTCAGGCACAGTCACGGGGCGCGACGCGAAGAATAGGTTGCTGGATTGTATGGTGAATTTTATTAAAATATTAATGAATTATCCCGTGTTCGACGTGTTGTTAGTCAATAGGTTTAACAAGGTACTTTCCATCTAACCGTGTTCTGCTAGAGGAAAGAGCAAAAAGAAGGAGATGGATAGAAAACGTTTCGTGAACAAAAATATTTCAGTTCCTTTCAATCACTACGATTTTTCATGAATTTTATCCTTGGATTTTGGATATGGTTTGCCAGCCATTGAATGCCGCAATTCAGTTTCATCAAATATTGTAACGTGTTTGAGACGTGAAATACAGGAACTAGAGTCAGAAATCGTACCAGGACAGGTTAGTGTTTATTTATTTCGTTCATACTTCACACAGTAGTGTGTGTCCTTTCGAATATTAACGACGTGTTGGTGTCAGTTAACAAGAAGAATAGAAATAAATTGCNTACCCGGCATATTAGTTCCTCGNTCCAATTAGAGCGTACAAGTTAGAAGTGTATAAGAAAACAAAATTGGAAACGTTAGATATGGTTTCTAGTTTGAACGGGATTGGCTGCAAGAGGTGCCGGAGGTTAGTTAGTATTTTCCCCGAAGGGGTTTTTCCTCACCTTTNACCGGTTNCGGAATGCNNAAATACCGAATNNAACGGGTGGTGAAATTAGACACAACGCTCT]




>consensus_6165#0
CAGAATCGCNCACGAGGACTAATTACATATTGGCGATGCAAAACGGGCGTGGATGATGAT
AGGTCAGGAAGTGTAGTAATGTGGGGAGTGTGTGGGCAGATGTTGCGTAGTAATACAGCA
AAACCAACTACTCAGGCACAGTCACGGGGCGCGACGCGAAGAATAGGTTGCTGGATTGTA
TGGTGAATTTTATTAAAATATTAATGAATTATCCCGTGTTCGACGTGTTGTTAGTCAATA
GGTTTAACAAGGTACTTTCCATCTAACCGTGTTCTGCTAGAGGAAAGAGCAAAAAGAAGG
AGATGGATAGAAAACGTTTCGTGAACAAAAATATTTCAGTTCCTTTCAATCACTACGATT
TTTCATGAATTTTATCCTTGGATTTTGGATATGGTTTGCCAGCCATTGAATGCCGCAATT
CAGTTTCATCAAATATTGTAACGTGTTTGAGACGTGAAATACAGGAACTAGAGTCAGAAA
TCGTACCAGGACAGGTTAGTGTTTATTTATTTCGTTCATACTTCACACAGTAGTGTGTGT
CCTTTCGAATATTAACGACGTGTTGGTGTCAGTTAACAAGAAGAATAGAAATAAATTGCN
TACCCGGCATATTAGTTCCTCGNTCCAATTAGAGCGTACAAGTTAGAAGTGTATAAGAAA
ACAAAATTGGAAACGTTAGATATGGTTTCTAGTTTGAACGGGATTGGCTGCAAGAGGTGC
CGGAGGTTAGTTAGTATTTTCCCCGAAGGGGTTTTTCCTCACCTTTNACCGGTTNCGGAA
TGCNNAAATACCGAATNNAACGGGTGGTGAAATTAGACACAACGCTCT

consensusID : consensus_6165#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 799
fasta sequence

                              [GATCGCCGAGGNGGCAGTTAGTGTTATTTATTTCGTCATACTTCACACAGGTAGTGTGTGTCCTTTCGAATATTAACGACGTGTGGTGTCAGTTAACAAAAAATAAAAAATAAATTGCATACCGGCATATTAGTTCCTCGTCCAATAGAGCGTACAAAGTTAGAGTGTATAGAAACAAATTGAAACGTTTANGANATGTTTCTAGTTTGAACGGATTGGGCTTGGAAGAGGTGCGGAGGTAGTTTAGTATTTCCCGAGGGTTTTCCTCACCTTGACCGTTTCCGATGCTAATACGATAGAAAGGTTGTAGAAATTAAGACAACACTCTAATCAATAGGAACTAACGTGTAGCTCAACACCCCACCAATGCGCCAGACGCAAAGGTGCGAGGATAACACCGGAATGTGGCTGTCGTCCTCGGCGTCCTGTTTAGCTAGGAAGGATAGGAAGGAGTGAGTTTATGATGCGTGATGATGGCACCTCTGCTTGCAGAAGGTAACATTAGTAGATGGGCAGCGCTCCCTTCACAACTCACCTAGACGGAGTACTTCAGCAGAATCTAGGCTATGTATGGAATCCATAAATACAAGAATTTTATCGACTATATCATAAGGCAACTAATAGAGAAAGACACCACATACCAACCACAAGTGCGAGAGGTAACATAATACACTCTCACACTCACACTCACACAGCAAAAGCAAACCAACAAACAAGCATAAGGAAAGGGATTTGGGACGTTAGAGAGACTTAGTGTCACGTAATTAACAACTTTCAAGTCAAAATTTGAATTTTGAAA]

[+] EMBL AL930060             [GATCGCCGAGGNGGCAGTTAGTGTTATTTATTTCGTCATACTTCACACAGGTAGTGTGTGTCCTTTCGAATATTAACGACGTGTGGTGTCAGTTAACAAAAAATAAAAAATAAATTGCATACCGGCATATTAGTTCCTCGTCCAATAGAGCGTACAAAGTTAGAGTGTATAGAAACAAATTGAAACGTTTANGANATGTTTCTAGTTTGAACGGATTGGGCTTGGAAGAGGTGCGGAGGTAGTTTAGTATTTCCCGAGGGTTTTCCTCACCTTGACCGTTTCCGATGCTAATACGATAGAAAGGTTGTAGAAATTAAGACAACACTCTAATCAATAGGAACTAACGTGTAGCTCAACACCCCACCAATGCGCCAGACGCAAAGGTGCGAGGATAACACCGGAATGTGGCTGTCGTCCTCGGCGTCCTGTTTAGCTAGGAAGGATAGGAAGGAGTGAGTTTATGATGCGTGATGATGGCACCTCTGCTTGCAGAAGGTAACAT                                                                                                                                                                                                                                                                                                         ]
[+] EMBL BX610156             [                                                                                                                                                                                                      TTTCTAGTTTGAACGGATT GGCT  G AGAGGTGCGGAGGTAGTTTAGTATTTCCCGAGGGTTTTCCTCACCTTGACCGTTTCCGATGCTAATACGATAGAAAGGTTGTAGAAATTAAGACAACACTCTAATCAATAGGAACTAACGTGTAGCTCAACACCCCACCAATGCGCCAGACGCAAAGGTGCGAGGATAACACCGGAATGTGGCTGTCGTCCTCGGCGTCCTGTTTAGCTAGGAAGGATAGGAAGGAGTGAGTTTATGATGCGTGATGATGGCACCTCTGCTTGCAGAAGGTAACATTAGTAGATGGGCAGCGCTCCCTTCACAACTCACCTAGACGGAGTACTTCAGCAGAATCTAGGCTATGTATGGAATCCATAAATACAAGAATTTTATCGACTATATCATAAGGCAACTAATAGAGAAAGACACCACATACCAACCACAAGTGCGAGAGGTAACATAATACACTCTCACACTCACACTCACACAGCAAAAGCAAACCAACAAACAAGCATAAGGAAATGGATTTGGGACGTTAGAGAGACTTAGTGTCACGTAATTAACAACTTTCAAGTCAAA               ]
[-] EMBL BX614997             [                                                                                                                                                                                                                                                                                                                                                                                                                                                 CTAGGAAGGATAGGAAGGAGTGAGTTTATGATGCGTGATGATGGCACCTCTGCTTGCAGAAGGTAACATTAGTAGATGGGCAGCGCTCCCTTCACAACTCACCTAGACGGAGTACTTCAGCAGAATCTAGGCTATGTATGGAATCCATAAATACAAGAATTTTATCGACTATATCATAAGGCAACTATTAGAGAAAGACACCACATACCAACCACAAGTGCGAGAGGTAACATAATACACTCTCACACTCACACTCACACAGCAAAAGCAAACCAACAAACAAGCATAAGGAAAGGGATTTGGGACGTTAGAGAGACTTAGTGTCACGTAATTAATAACTTTCAAGTCAAAATTTGAATTTTGAAA]
[+] EMBL BX616011             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CATAAGGCAACTAATAGAGAAAGACACCACATACCAACCACAAGGGCGAGAGGGAACATAATACACTCTCACACTCACACTCACACAGCAAAAGCAAACCAACAAACAAGCATAAGGAAAGGGAATTGGGACGTTAGAGAGACT                                                ]




>consensus_6165#1
GATCGCCGAGGNGGCAGTTAGTGTTATTTATTTCGTCATACTTCACACAGGTAGTGTGTG
TCCTTTCGAATATTAACGACGTGTGGTGTCAGTTAACAAAAAATAAAAAATAAATTGCAT
ACCGGCATATTAGTTCCTCGTCCAATAGAGCGTACAAAGTTAGAGTGTATAGAAACAAAT
TGAAACGTTTANGANATGTTTCTAGTTTGAACGGATTGGGCTTGGAAGAGGTGCGGAGGT
AGTTTAGTATTTCCCGAGGGTTTTCCTCACCTTGACCGTTTCCGATGCTAATACGATAGA
AAGGTTGTAGAAATTAAGACAACACTCTAATCAATAGGAACTAACGTGTAGCTCAACACC
CCACCAATGCGCCAGACGCAAAGGTGCGAGGATAACACCGGAATGTGGCTGTCGTCCTCG
GCGTCCTGTTTAGCTAGGAAGGATAGGAAGGAGTGAGTTTATGATGCGTGATGATGGCAC
CTCTGCTTGCAGAAGGTAACATTAGTAGATGGGCAGCGCTCCCTTCACAACTCACCTAGA
CGGAGTACTTCAGCAGAATCTAGGCTATGTATGGAATCCATAAATACAAGAATTTTATCG
ACTATATCATAAGGCAACTAATAGAGAAAGACACCACATACCAACCACAAGTGCGAGAGG
TAACATAATACACTCTCACACTCACACTCACACAGCAAAAGCAAACCAACAAACAAGCAT
AAGGAAAGGGATTTGGGACGTTAGAGAGACTTAGTGTCACGTAATTAACAACTTTCAAGT
CAAAATTTGAATTTTGAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6165#0      CAGAATCGCNCACGAGG--ACTAATTACATAT-TGGCGATGCAAAACGGGCGTGGATGAT 57
consensus_6165#1      ---GATCGCCGAGGNGGCAGTTAGTGTTATTTATTTCGTCATACTTCACACAGGTAGTGT 57
                          *****  * * **    ** *   ** * *  **    *   *   *  * *   *

consensus_6165#0      GATAGGTCAGGAAGTGTAGTAATGTGGGGAGTGTGTGGGCAGATGTTGCGTAGTAA---- 113
consensus_6165#1      GTGTCCTTTCGAATATTAACGACGTGTGGTGTCAGTTAACAAAAAATAAAAAATAAATTG 117
                      *     *   ***   **   * *** ** **  **   ** *   *    * ***    

consensus_6165#0      --TACAGCAAAACCAACTACTCA---GGCACAGT-CACGGGGCGCGACGCGAAGAATAGG 167
consensus_6165#1      CATACCGGCATATTAGTTCCTCGTCCAATAGAGCGTACAAAGTTAGA-GTGTATAGAAAC 176
                        *** *  * *  *  * ***       * **   **   *   ** * * * *  *  

consensus_6165#0      TTGCTGGATTGTATGGTGAATTTTATTAAAATATTAATGAATTAT-CCCGTGTTCGACGT 226
consensus_6165#1      AAATTGAAACGTTTANGANATGTTTCTA--GTTTGAACGGATTGGGCTTGGAAGAGGTGC 234
                          ** *  ** *     ** **  **   * * ** * ***   *  *     *  * 

consensus_6165#0      GTTGTTAGTCAATAGGTTTAACAAGGTACTTTCCATCT-AACCGTGTTCTGCTAGAGGAA 285
consensus_6165#1      GGAGGTAGTTTAGTATTTCCCGAGGGTTTTCCTCACCTTGACCGT-TTCCGATGCTAATA 293
                      *  * ****  *    **    * ***  *   ** **  ***** *** * *      *

consensus_6165#0      AGAGCAAAAAGAAGGAGATGGATAGAAAACGTTTCG-TGAACAAAAATATTTCAGTTCCT 344
consensus_6165#1      CGATAGAAAGGTTGTAGAAATTAAGACAACACTCTAATCAATAGGAACTAACGTGTAGCT 353
                       **   *** *  * ***     *** ***  *    * ** *  **       **  **

consensus_6165#0      TTCAATCACTACGATTTTTCATGAATTTTATCCTTGGATTTTGGATATGGTTTGCCAGCC 404
consensus_6165#1      CAACACCCCACCAATGCGCCAGACGCAAAGGTGCGAGGATAACACCGGAATGTGGCTGTC 413
                          * * *  * **    **               *  *          * ** * * *

consensus_6165#0      ATTGAATGC-CGCAATTCAGTTTCATCAAATATT--GTAACGTGTTTGAGACGTGAAAT- 460
consensus_6165#1      GTCCTCGGCGTCCTGTTTAGCTAGGAAGGATAGGAAGGAGTGAGTTTATGATGCGTGATG 473
                       *     **   *  ** ** *       ***    * *  * ****  ** * *  ** 

consensus_6165#0      ACAGGAACTAGAGTCAGAAATCGTACCAGGACAGGTTAGTGTTTATTTATTTCGTTCATA 520
consensus_6165#1      ATGGCACCTCTGCTTGCAGAAGGTAACATTA---GTAGATGGGCAGC-GCTCCCTTCACA 529
                      *  * * **    *   * *  *** **  *   **   **   *     * * **** *

consensus_6165#0      CTTCACACAGTAGTGTGTGTCCTTTCGAATATTAACGACGTGTTGGTGTCAGTTAACAAG 580
consensus_6165#1      ACTCACCTAGACGGAGTACTTCAGCAGAATCTAGGCTATGTAT-GGAATC------CATA 582
                        ****  **  *      * *    **** *   * * ** * **  **      **  

consensus_6165#0      AAGAATAGAAATAAATTGCNTACCCGGCATATTAGTTCCTCGNTCCAATTAGAGCGTACA 640
consensus_6165#1      AATACAAGAATTTTATCGACTATATCATAAGGCAACTAATAGAGAAAGACACCACATACC 642
                      ** *  **** *  ** *  **      *    *  *  * *    *   *   * *** 

consensus_6165#0      AGTTAGAAGTGTATAAGAAAACAAAATTGGAAACGTTAGATATGGTTTCTAGTTTGAACG 700
consensus_6165#1      AACCACAAGTGCGAGAGGTAACATAATACACTCTCACACTCACACTCACACAGCAAAAGC 702
                      *   * *****    **  **** ***          *   *   *  *       **  

consensus_6165#0      GGATTGGCTGCAAGAGGTGCCGGAGGTTAGTTAGTATTTTCCCCGAAGGGGTTTTTCCTC 760
consensus_6165#1      AAACCAACAAACAAGCATAAGGAAAGGGATTTGGGACGTT----AGAGAGACTTAGTGTC 758
                        *    *    *    *   * * *  * ** * *  **      ** *  **    **

consensus_6165#0      ACCT--TTNACCGGTTNCGGAATGCNNAAATACCGAATNNAACGGGTGGTGAAATTAGAC 818
consensus_6165#1      ACGTAATTAACAACTTTC---AAGTCAAAATTTGAATTTTGAAA---------------- 799
                      ** *  ** **   ** *   * *   ****    * *   *                  

consensus_6165#0      ACAACGCTCT 828
consensus_6165#1      ----------