These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_619#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 707 fasta sequence [CCGCGGACGCGTGGGCGGTAATTGAGGACATTGATCTGTCCGATGGGGTGTCGACCAATTTCAGCAACGTGGTCGCTGCCGCCGCAGCAGCCATGAATGTAGTCTCCTCTGGTCAGCAGCAACAGCAGCAGCAACAACAACAGCAACAACAGCAAACGACGACCATAGCGGGAAGCAAAATGTCATCGGACGTGGATAACAATGGATCTCAAAGTGACGACGATGATGGTGATATGATGGACGAGGGCGGAGATGAGGGTAGTGGCGACCTGGGGCACGATGATGACGGCGAACACATCACAAAGTACAACACGAAGATGCTGAAGCTGAAGAAGGACAGTGGACCGATGGCTGGGGCGAAGCTGCTGAACGCATCGGTTGGCGACAGCAAGTACGCGCTGCTAGCGAATCCAAACATTATGCGAAATTTCGAATACACGGTAAATGAATCGACCGGGGTAAGTGATACGGATGACGGCGAGGTACGCCAGTATGTGTGCAGACACTGTGGGAAGCGATACCGCTGGAAGTCAACCTTGCGGCGTCACGAAAATGTCGAGTGCGGTGGCAAGGAAGCGTCGCACCAGTGTCCCTACTGCAGCTACAAGGCGAAACAGCGCGGCAATCTCGGTGTGCACATACGCAAGCATCATTCGGAGATGCCGCAGCTGGAGAGCCGCCGTAGGTCGAACAAGTCGCGCCATTCG] [+] EMBL BM620741 [CCGCGGACGCGTGGGCGGTAATTGAGGACATTGATCTGTCCGATGGGGTGTCGACCAATTTCAGCAACGTGGTCGCTGCCGCCGCAGCAGCCATGAATGTAGTCTCCTCTGGTCAGCAGCAACAGCAGCAGCAACAACAACAGCAACAACAGCAAACGACGACCATAGCGGGAAGCAAAATGTCATCGGACGTGGATAACAATGGATCTCAAAGTGACGACGATGATGGTGATATGATGGACGAGGGCGGAGATGAGGGTAGTGGCGACCTGGGGCACGATGATGACGGCGAACACATCACAAAGTACAACACGAAGATGCTGAAGCTGAAGAAGGACAGTGGACCGATGGCTGGGGCGAAGCTGCTGAACGCATCGGTTGGCGACAGCAAGTACGCGCTGCTAGCGAATCCAAACATTATGCGAAATTTCGAATACACGGTAAATGAATCGACCGGGGTAAGTGATACGGATGACGGCGAGGTACGCCAGTATGTGTGCAGACACTGTGGGAAGCGATACCGCTGGAAGTCAACCTTGCGGCGTCACGAAAATGTCGAGTGCGGTGGCAAGGAAGCGTCGCACCAGTGTCCCTACTGCAGCTACAAGGCGAAACAGCGCGGCAATCTCGGTGTGCACATACGCAAGCATCATTCGGAGATGCCGCAGCTGGAGAGCCGCCGTAGGTCGAACAAGTCGCGCCATTCG] consensusID : consensus_619#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 665 fasta sequence [CCGGTGGCCGGAACCGAGCGACAGTTGTTGAACTTTTCGTTGTCACGTAAACTGGGATCCGCAGGGCAACAGTCCCAGCAGCACGTCACGATCACTGGTGCAGGACCTCCCGGCCTGACGACGATCAATGCTTCGACCCTACAGCAGATCCCGATAGCTGCAGCCATAAGTGGTGCTAATGCACGCGGTGGCTCGGTGACTACCCGCTACACGGTGAACGAATACGAAACGTCGGGCTCTAACACGTCCCAGAGCGCTGACTTCCCGCCTGGAATGATCGACGATCTCGATTACTCGGTAATTGAGGACATTGATCTGTCCGATGGGGTGTCGACCAATTTCAGCAACGTGGTCGCTGCCGCCGCCGCAGCAGCCATGAATGTAGTCTCCTCTGGTCAGCAGCAACAGCAGCAGCAACAACAACAGCAACAACAGCAAACGACGACCATAGCGGGAAGCAAAATGTCATCGGACGTGGATAACAATGGATCTCAAAGTGACGACGATGATGGTGATATGATGGACGAGGGCGGAGATGAGGGTAGTGGCGACCTGGGGCACGATGACGACGGCGAACACATCACAAAGTACAACACGAAGATGCTGAAGCTGAAGAAGGACAGTGGACCGATGGCTGGGGCGAAGCTGCTGAACGCATCGGTTGG] [+] EMBL BM638704 [CCGGTGGCCGGAACCGAGCGACAGTTGTTGAACTTTTCGTTGTCACGTAAACTGGGATCCGCAGGGCAACAGTCCCAGCAGCACGTCACGATCACTGGTGCAGGACCTCCCGGCCTGACGACGATCAATGCTTCGACCCTACAGCAGATCCCGATAGCTGCAGCCATAAGTGGTGCTAATGCACGCGGTGGCTCGGTGACTACCCGCTACACGGTGAACGAATACGAAACGTCGGGCTCTAACACGTCCCAGAGCGCTGACTTCCCGCCTGGAATGATCGACGATCTCGATTACTCGGTAATTGAGGACATTGATCTGTCCGATGGGGTGTCGACCAATTTCAGCAACGTGGTCGCTGCCGCCGCCGCAGCAGCCATGAATGTAGTCTCCTCTGGTCAGCAGCAACAGCAGCAGCAACAACAACAGCAACAACAGCAAACGACGACCATAGCGGGAAGCAAAATGTCATCGGACGTGGATAACAATGGATCTCAAAGTGACGACGATGATGGTGATATGATGGACGAGGGCGGAGATGAGGGTAGTGGCGACCTGGGGCACGATGACGACGGCGAACACATCACAAAGTACAACACGAAGATGCTGAAGCTGAAGAAGGACAGTGGACCGATGGCTGGGGCGAAGCTGCTGAACGCATCGGTTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_619#0 ------------------------------------------------------------ consensus_619#1 CCGGTGGCCGGAACCGAGCGACAGTTGTTGAACTTTTCGTTGTCACGTAAACTGGGATCC 60 consensus_619#0 ------------------------------------------------------------ consensus_619#1 GCAGGGCAACAGTCCCAGCAGCACGTCACGATCACTGGTGCAGGACCTCCCGGCCTGACG 120 consensus_619#0 ------------------------------------------------------------ consensus_619#1 ACGATCAATGCTTCGACCCTACAGCAGATCCCGATAGCTGCAGCCATAAGTGGTGCTAAT 180 consensus_619#0 ------------------------------------------------------------ consensus_619#1 GCACGCGGTGGCTCGGTGACTACCCGCTACACGGTGAACGAATACGAAACGTCGGGCTCT 240 consensus_619#0 --------------------------------------CCGCGGACGCG--TGGGCGGTA 20 consensus_619#1 AACACGTCCCAGAGCGCTGACTTCCCGCCTGGAATGATCGACGATCTCGATTACTCGGTA 300 * ** * ** * ***** consensus_619#0 ATTGAGGACATTGATCTGTCCGATGGGGTGTCGACCAATTTCAGCAACGTGGTCGCTGCC 80 consensus_619#1 ATTGAGGACATTGATCTGTCCGATGGGGTGTCGACCAATTTCAGCAACGTGGTCGCTGCC 360 ************************************************************ consensus_619#0 GCCGC---AGCAGCCATGAATGTAGTCTCCTCTGGTCAGCAGCAACAGCAGCAGCAACAA 137 consensus_619#1 GCCGCCGCAGCAGCCATGAATGTAGTCTCCTCTGGTCAGCAGCAACAGCAGCAGCAACAA 420 ***** **************************************************** consensus_619#0 CAACAGCAACAACAGCAAACGACGACCATAGCGGGAAGCAAAATGTCATCGGACGTGGAT 197 consensus_619#1 CAACAGCAACAACAGCAAACGACGACCATAGCGGGAAGCAAAATGTCATCGGACGTGGAT 480 ************************************************************ consensus_619#0 AACAATGGATCTCAAAGTGACGACGATGATGGTGATATGATGGACGAGGGCGGAGATGAG 257 consensus_619#1 AACAATGGATCTCAAAGTGACGACGATGATGGTGATATGATGGACGAGGGCGGAGATGAG 540 ************************************************************ consensus_619#0 GGTAGTGGCGACCTGGGGCACGATGATGACGGCGAACACATCACAAAGTACAACACGAAG 317 consensus_619#1 GGTAGTGGCGACCTGGGGCACGATGACGACGGCGAACACATCACAAAGTACAACACGAAG 600 ************************** ********************************* consensus_619#0 ATGCTGAAGCTGAAGAAGGACAGTGGACCGATGGCTGGGGCGAAGCTGCTGAACGCATCG 377 consensus_619#1 ATGCTGAAGCTGAAGAAGGACAGTGGACCGATGGCTGGGGCGAAGCTGCTGAACGCATCG 660 ************************************************************ consensus_619#0 GTTGGCGACAGCAAGTACGCGCTGCTAGCGAATCCAAACATTATGCGAAATTTCGAATAC 437 consensus_619#1 GTTGG------------------------------------------------------- 665 ***** consensus_619#0 ACGGTAAATGAATCGACCGGGGTAAGTGATACGGATGACGGCGAGGTACGCCAGTATGTG 497 consensus_619#1 ------------------------------------------------------------ consensus_619#0 TGCAGACACTGTGGGAAGCGATACCGCTGGAAGTCAACCTTGCGGCGTCACGAAAATGTC 557 consensus_619#1 ------------------------------------------------------------ consensus_619#0 GAGTGCGGTGGCAAGGAAGCGTCGCACCAGTGTCCCTACTGCAGCTACAAGGCGAAACAG 617 consensus_619#1 ------------------------------------------------------------ consensus_619#0 CGCGGCAATCTCGGTGTGCACATACGCAAGCATCATTCGGAGATGCCGCAGCTGGAGAGC 677 consensus_619#1 ------------------------------------------------------------ consensus_619#0 CGCCGTAGGTCGAACAAGTCGCGCCATTCG 707 consensus_619#1 ------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||