These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6194#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1759 fasta sequence [CCGCGGACGCGTGGGCAGGCAGCGAAGAGATCGAGCTGAACCGCCTGTCGGCCGCAACTCCGCTGCAAAACTTTGTCCCCTCAACGATACGATTTCGCAATGTAGTCTACAGGACAAATGAGAAAGAAATATTGGGCAACGTGTCGGGACGCTTCCAACATGGTCGTCTAGTGGCGCTCATGGGACCTTCAGGCGCGGGCAAGTCTTCGCTCCTGAACGTACTGTCCGGTGCGCAAGTGTTCGGCATGATCGGTACCGTCACGATCAACGGTGAGCCGGTGGAAGAGAACGATCCACGCAGCGTGTACGTCGAGCAGGAGTGTCCACTGCTGGCGTTTCTCACCGTCCAGGAAACGATGCAGTTTGCCGTGGACATGAAGATGCCGCAGAGTTCCCCGAAATCGGCCAAGCAGGCCAAAATTGATGATATTCTGGAGATGGTCGGTTTGGATACGGCTCGAAACACGGTCGTTCGCAGTCTGTCCGGGGGCGAGCAGCGCCGACTGGCGGTTGCTGTTGAGCTGATCACCAATCCACCGATAATGCTGTTCGACGAGCCAACGAGCGGGCTGGACAGTGTGTCGTCGACGCAGGTGATTGCACATCTAAAATCGTTGGCGATGAGTGGCCGTACAATCGTTTGTACGAT-CCACCAGCCGGCTTCAAGTCTATTCCAGCTGTTCGACGATGTGTATCTGCTACGGCAGGGACGCTGTTTGTATGCTGGGCCAGTTGAGCAGATGCTTACACGGTTTGCCCGGGTTGGATTGCGCTGTCCGGAGTATTACAATCCGGCCGATTTTGCGCTGGAATCGATATCGGCCAACCAGCCGGAAGCGCACCGGATGCTGTGCCAGCTGGTGGACGAGGAGATGCGGGAAGTTAATGCGGGTGCACCGTCCAGCCCGACGACGCTCGCTGCTCAGCTCGGACAGGGTGGGAAGAGGATTGCTCGTTATCAGACAGCTGGCTATTATCAGTTGTACACACTGTTGAAGCGATCGGTAGTGTCGTCGGCGAGGGATGAGTTTTTCCTCAAGATTCGACTCGGTATGCATCTGGCGCTGGGGCTCGTCTTCGTTGCGGTACACTATGATGCTGGGTCGGATGCGGCCAAGGTGCTGGCAAACGTTGGTTGCTTCTTCCAGCTGGTTGCCTTCGTGTATTTTACGAACGCAGTGTCGGTGGTTAACTATGCGGATGAGGTGAGCGTCGCGATCAAGGAAATCGCCAACAACTGGTACAGCCGGGAGGCGTACTTCGCCGCCAAGCTGATCCACGACCTACCGCTCCAGCTGTTCTGTCCCTCGTTTCTGCTCGCGATCGTGTACTACCTAACCGGCCAGCCGCTCGAGTGGGCCCGGTTCGGCATGCTGCTCGGTGTGTTCGCGATCGGTGGCGTCATCGGTCAAAGCCTGGGCCTGATCGGGGGCATCTGTTTCGAGGTGAAGATGCAAAACTTTTTCGTAGCGAACGCGTGCATCGTACCGATACTGTTTTCGGGCTTCTTTGTCAATGCGGGCGACATGATAGCGATCCTGCGACCGCTCAGTACGGTGTCGTTCTTTCGGTACCAGTTCCACGGCGCGATGCAGGCACTGTACGGGTACGATCGGGGTAATATACCGTGCGGACAGGTGTACTGCTATTACAAGAAACCGACCACGCTGCTGGAGCAGTTCGATATCGACGAGTACGGGTATGGGACGAGCATTGCGAAGGCGTTAGTGTTGGTGCTGATAATGCAGCTGATAATTTA] [+] EMBL BM634936 [CCGCGGACGCGTGGGCAGGCAGCGAAGAGATCGAGCTGAACCGCCTGTCGGCCGCAACTCCGCTGCAAAACTTTGTCCCCTCAACGATACGATTTCGCAATGTAGTCTACAGGACAAATGAGAAAGAAATATTGGGCAACGTGTCGGGACGCTTCCAACATGGTCGTCTAGTGGCGCTCATGGGACCTTCAGGCGCGGGCAAGTCTTCGCTCCTGAACGTACTGTCCGGTGCGCAAGTGTTCGGCATGATCGGTACCGTCACGATCAACGGTGAGCCGGTGGAAGAGAACGATCCACGCAGCGTGTACGTCGAGCAGGAGTGTCCACTGCTGGCGTTTCTCACCGTCCAGGAAACGATGCAGTTTGCCGTGGACATGAAGATGCCGCAGAGTTCCCCGAAATCGGCCAAGCAGGCCAAAATTGATGATATTCTGGAGATGGTCGGTTTGGATACGGCTCGAAACACGGTCGTTCGCAGTCTGTCCGGGGGCGAGCAGCGCCGACTGGCGGTTGCTGTTGAGCTGATCACCAATCCACCGATAATGCTGTTCGACGAGCCAACGAGCGGGCTGGACAGTGTGTCGTCGACGCAGGTGATTGCACATCTAAAATCGTTGGCGATGAGTGGCCGTACAATCGTTTGTACGATCCCACCAGCC ] [+] EMBL BM639730 [ ccgGTTCGACGAGCCAACGAGCGGGCTGGACAGTGTGTCGTCGACGCAGGTGATTGCACATCTAAAATCGTTGGCGATGAGTGGCCGTACAATCGTTTGTACGAT CCACCAGCCGGCTTCAAGTCTATTCCAGCTGTTCGACGATGTGTATCTGCTACGGCAGGGACGCTGTTTGTATGCTGGGCCAGTTGAGCAGATGCTTACACGGTTTGCCCGGGTTGGATTGCGCTGTCCGGAGTATTACAATCCGGCCGATTTTGCGCTGGAATCGATATCGGCCAACCAGCCGGAAGCGCACCGGATGCTGTGCCAGCTGGTGGACGAGGAGATGCGGGAAGTTAATGCGGGTGCACCGTCCAGCCCGACGACGCTCGCTGCTCAGCTCGGACAGGGTGGGAAGAGGATTGCTCGTTATCAGACAGCTGGCTATTATCAGTTGTACACACTGTTGAAGCGATCGGTAGTGTCGTCGGCGAGGGATGAGTTTTTCCTCAAGATTCGACTCGGTATGCATCTGGCGCTGGGGCTCGTCTTCGTTGCGGTACACTATGATGCTGGGTCGGATGCGGCCAAGGTGCTGGCAAACGTTGGTTGCTTCTTCCAGCTGGTTGCCTTCGTGTATT ] [+] EMBL BM639960 [ ccgcGGAC GCGGGGCGTCGACGCAGGTGATTGCACACCTAAAATCGATGGCGATGAGTGGCCGTACAATCGTCTGTACGAT CCACCAGCCGGCTTCCAGTCTGTTCCAGCTGTTCGACGATGTGTATCTGCTGCGACAGGGACGCTGTTTGTATGCTGGGCCGGTTGAGCAGATGCTGACACGGTTTGCCCGGGTTGGATTGCGCTGTCCGGAGTATTACAATCCGGCCGATTTTGCGCTGGAATCGATATCGGCCAACCAGCCGGAAGCGCACCGGATGCTGTGCCAGCTGGTGGACGAGGAGATGCGGGAGGTTAATGCGGGTGC ] [+] EMBL BM649413 [ ccgGCGGCCAAGGTGCTGGCAAACGTTGGTTGCTTCTTCCAGCTGTTTGCCTTCGTGTATTTTACGAACGCAGTGTCGGTGGTTAACTATGCGGATGAGGTGAGCGTCGCGATCAAGGAAATCGCCAACAACTGGTACAGCCGGGAGGCGTACTTCGCCGCCAAGCTGATCCACGACCTACCGCTCCAGCTGTTCTGTCCCTCGTTTCTGCTCGCGATCGTGTACTACCTAACCGGCCAGCCGCTCGAGTGGGCCCGGTTCGGCATGCTGCTCGGTGTGTTCGCGATCGGTGGCGTCATCGGTCAAAGCCTGGGCCTGATCGGGGGCATCTGTTTCGAGGTGAAGATGCAAAACTTTTTCGTAGCGAACGCGTGCATCGTACCGATACTGTTTTCGGGCTTCTTTGTCAATGCGGGCGACATGATAGCGATCCTGCGACCGCTCAGTACGGTGTCGTTCTTTCGGTACCAGTTCCACGGCGCGATGCAGGCACTGTACGGGTACGATCGGGGTAATATACCGTGCGGACAGGTGTACTGCTATTACAAGAAACCGACCACGCTGCTGGAGCAGTTCGATATCGACGAGTACGGGTATGGGACGAGCATTGCGAAGGCGTTAGTGTTGGTGCTGATAATGCAGCTGATAATTTA] consensusID : consensus_6194#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 584 fasta sequence [AATCCCCGAGGTTTAAAGAGATCGAGCTGAACGCCTGTCGGCCGCAACTCCGCTGCAAAACTTTGTCCCCTCAACGATACGATTTCGCAATGTGGTTTACAGGACAAATGAGAAAGAAATATTGGGCAATGTGTCGGGACGCTTCCAACATGGTCGTCTAGTGGCGCTCATGGGACCTTCCGGCGCGGGCAAGTCTTCACTCCTGAACGTACTGTCCGGTGCACAAGTGTTCGGCATGATCGGTACCGTCACGATCAACGGTGAGCCGGTGGAAGAAAACGATCCACGCAGCGTGTACGTCGAGCAGGAGTGTCCACTGCTGGCGTTTCTCACCGTCCAGGAAACGATGCAGTTTGCCGTGGACATGAAGATGCCGCAGAGTTCCCCGAAATCGGCAAGCAGGCCAAAATCGATGACATTCTGGAGATGGTCGGTTTGGATACGGCTCGAAACACAGTCGTTCGCAGTCTGTCCGGAGGTGAACAGCGTCGACTGGCGGTAGCGGTTGAGCTGATCACCAATCCACCGATAATGCTGTTCGACGAGCCAACGAGCGGGCTGGACAGTGTGTCGTCGACGCAGGT] [+] EMBL AL693082 [AATCCCCGAGGTTTAAAGAGATCGAGCTGAACGCCTGTCGGCCGCAACTCCGCTGCAAAACTTTGTCCCCTCAACGATACGATTTCGCAATGTGGTTTACAGGACAAATGAGAAAGAAATATTGGGCAATGTGTCGGGACGCTTCCAACATGGTCGTCTAGTGGCGCTCATGGGACCTTCCGGCGCGGGCAAGTCTTCACTCCTGAACGTACTGTCCGGTGCACAAGTGTTCGGCATGATCGGTACCGTCACGATCAACGGTGAGCCGGTGGAAGAAAACGATCCACGCAGCGTGTACGTCGAGCAGGAGTGTCCACTGCTGGCGTTTCTCACCGTCCAGGAAACGATGCAGTTTGCCGTGGACATGAAGATGCCGCAGAGTTCCCCGAAATCGGCAAGCAGGCCAAAATCGATGACATTCTGGAGATGGTCGGTTTGGATACGGCTCGAAACACAGTCGTTCGCAGTCTGTCCGGAGGTGAACAGCGTCGACTGGCGGTAGCGGTTGAGCTGATCACCAATCCACCGATAATGCTGTTCGACGAGCCAACGAGCGGGCTGGACAGTGTGTCGTCGACGCAGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6194#0 CCGCGGACGCGTGGGCAGGCAGCGAAGAGATCGAGCTGAACCGCCTGTCGGCCGCAACTC 60 consensus_6194#1 ---------AATCCCCGAGGTTTAAAGAGATCGAGCTGAAC-GCCTGTCGGCCGCAACTC 50 * * * ***************** ****************** consensus_6194#0 CGCTGCAAAACTTTGTCCCCTCAACGATACGATTTCGCAATGTAGTCTACAGGACAAATG 120 consensus_6194#1 CGCTGCAAAACTTTGTCCCCTCAACGATACGATTTCGCAATGTGGTTTACAGGACAAATG 110 ******************************************* ** ************* consensus_6194#0 AGAAAGAAATATTGGGCAACGTGTCGGGACGCTTCCAACATGGTCGTCTAGTGGCGCTCA 180 consensus_6194#1 AGAAAGAAATATTGGGCAATGTGTCGGGACGCTTCCAACATGGTCGTCTAGTGGCGCTCA 170 ******************* **************************************** consensus_6194#0 TGGGACCTTCAGGCGCGGGCAAGTCTTCGCTCCTGAACGTACTGTCCGGTGCGCAAGTGT 240 consensus_6194#1 TGGGACCTTCCGGCGCGGGCAAGTCTTCACTCCTGAACGTACTGTCCGGTGCACAAGTGT 230 ********** ***************** *********************** ******* consensus_6194#0 TCGGCATGATCGGTACCGTCACGATCAACGGTGAGCCGGTGGAAGAGAACGATCCACGCA 300 consensus_6194#1 TCGGCATGATCGGTACCGTCACGATCAACGGTGAGCCGGTGGAAGAAAACGATCCACGCA 290 ********************************************** ************* consensus_6194#0 GCGTGTACGTCGAGCAGGAGTGTCCACTGCTGGCGTTTCTCACCGTCCAGGAAACGATGC 360 consensus_6194#1 GCGTGTACGTCGAGCAGGAGTGTCCACTGCTGGCGTTTCTCACCGTCCAGGAAACGATGC 350 ************************************************************ consensus_6194#0 AGTTTGCCGTGGACATGAAGATGCCGCAGAGTTCCCCGAAATCGGCCAAGCAGGCCAAAA 420 consensus_6194#1 AGTTTGCCGTGGACATGAAGATGCCGCAGAGTTCCCCGAAATCGGC-AAGCAGGCCAAAA 409 ********************************************** ************* consensus_6194#0 TTGATGATATTCTGGAGATGGTCGGTTTGGATACGGCTCGAAACACGGTCGTTCGCAGTC 480 consensus_6194#1 TCGATGACATTCTGGAGATGGTCGGTTTGGATACGGCTCGAAACACAGTCGTTCGCAGTC 469 * ***** ************************************** ************* consensus_6194#0 TGTCCGGGGGCGAGCAGCGCCGACTGGCGGTTGCTGTTGAGCTGATCACCAATCCACCGA 540 consensus_6194#1 TGTCCGGAGGTGAACAGCGTCGACTGGCGGTAGCGGTTGAGCTGATCACCAATCCACCGA 529 ******* ** ** ***** *********** ** ************************* consensus_6194#0 TAATGCTGTTCGACGAGCCAACGAGCGGGCTGGACAGTGTGTCGTCGACGCAGGTGATTG 600 consensus_6194#1 TAATGCTGTTCGACGAGCCAACGAGCGGGCTGGACAGTGTGTCGTCGACGCAGGT----- 584 ******************************************************* consensus_6194#0 CACATCTAAAATCGTTGGCGATGAGTGGCCGTACAATCGTTTGTACGATCCACCAGCCGG 660 consensus_6194#1 ------------------------------------------------------------ consensus_6194#0 CTTCAAGTCTATTCCAGCTGTTCGACGATGTGTATCTGCTACGGCAGGGACGCTGTTTGT 720 consensus_6194#1 ------------------------------------------------------------ consensus_6194#0 ATGCTGGGCCAGTTGAGCAGATGCTTACACGGTTTGCCCGGGTTGGATTGCGCTGTCCGG 780 consensus_6194#1 ------------------------------------------------------------ consensus_6194#0 AGTATTACAATCCGGCCGATTTTGCGCTGGAATCGATATCGGCCAACCAGCCGGAAGCGC 840 consensus_6194#1 ------------------------------------------------------------ consensus_6194#0 ACCGGATGCTGTGCCAGCTGGTGGACGAGGAGATGCGGGAAGTTAATGCGGGTGCACCGT 900 consensus_6194#1 ------------------------------------------------------------ consensus_6194#0 CCAGCCCGACGACGCTCGCTGCTCAGCTCGGACAGGGTGGGAAGAGGATTGCTCGTTATC 960 consensus_6194#1 ------------------------------------------------------------ consensus_6194#0 AGACAGCTGGCTATTATCAGTTGTACACACTGTTGAAGCGATCGGTAGTGTCGTCGGCGA 1020 consensus_6194#1 ------------------------------------------------------------ consensus_6194#0 GGGATGAGTTTTTCCTCAAGATTCGACTCGGTATGCATCTGGCGCTGGGGCTCGTCTTCG 1080 consensus_6194#1 ------------------------------------------------------------ consensus_6194#0 TTGCGGTACACTATGATGCTGGGTCGGATGCGGCCAAGGTGCTGGCAAACGTTGGTTGCT 1140 consensus_6194#1 ------------------------------------------------------------ consensus_6194#0 TCTTCCAGCTGGTTGCCTTCGTGTATTTTACGAACGCAGTGTCGGTGGTTAACTATGCGG 1200 consensus_6194#1 ------------------------------------------------------------ consensus_6194#0 ATGAGGTGAGCGTCGCGATCAAGGAAATCGCCAACAACTGGTACAGCCGGGAGGCGTACT 1260 consensus_6194#1 ------------------------------------------------------------ consensus_6194#0 TCGCCGCCAAGCTGATCCACGACCTACCGCTCCAGCTGTTCTGTCCCTCGTTTCTGCTCG 1320 consensus_6194#1 ------------------------------------------------------------ consensus_6194#0 CGATCGTGTACTACCTAACCGGCCAGCCGCTCGAGTGGGCCCGGTTCGGCATGCTGCTCG 1380 consensus_6194#1 ------------------------------------------------------------ consensus_6194#0 GTGTGTTCGCGATCGGTGGCGTCATCGGTCAAAGCCTGGGCCTGATCGGGGGCATCTGTT 1440 consensus_6194#1 ------------------------------------------------------------ consensus_6194#0 TCGAGGTGAAGATGCAAAACTTTTTCGTAGCGAACGCGTGCATCGTACCGATACTGTTTT 1500 consensus_6194#1 ------------------------------------------------------------ consensus_6194#0 CGGGCTTCTTTGTCAATGCGGGCGACATGATAGCGATCCTGCGACCGCTCAGTACGGTGT 1560 consensus_6194#1 ------------------------------------------------------------ consensus_6194#0 CGTTCTTTCGGTACCAGTTCCACGGCGCGATGCAGGCACTGTACGGGTACGATCGGGGTA 1620 consensus_6194#1 ------------------------------------------------------------ consensus_6194#0 ATATACCGTGCGGACAGGTGTACTGCTATTACAAGAAACCGACCACGCTGCTGGAGCAGT 1680 consensus_6194#1 ------------------------------------------------------------ consensus_6194#0 TCGATATCGACGAGTACGGGTATGGGACGAGCATTGCGAAGGCGTTAGTGTTGGTGCTGA 1740 consensus_6194#1 ------------------------------------------------------------ consensus_6194#0 TAATGCAGCTGATAATTTA 1759 consensus_6194#1 ------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||