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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6201#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1274 fasta sequence
[CCGCGGACGCGTGGGGGGCGACATAAAGAAAGCGAAATCTGTCGGGAAAGTAAAGAAAGTTGCTGCAAGCACGGCGGAACCGGACGAAGAAGTGAACGGAGCTGAAGAGCAAAAGTCTAAGAAGACGAAAAAGGTCAAGTCCGTCGATGCCGAGCAAAATGAGGCAATGAACGGCAAAGTGAAGAAAGGGAAAAAATTGAAGTCCGAAGCACAGCGGCCAGAGCTGAATGGAAAAGAGAAGAAAAAGAAACGCAAACTGGCCGAGCCAGAGGAAGCGGACAGCGATGACGGTTCCGACCATGATGCTGCCGGCTCGAATGCGAACAGCGTATTGAAGAAGAAAACGAAGAAGGTTAAGAAGGTAACTGAGCAGGCTGAGATGAATGGTAAAAAGAAAAAAACTAAAACCGAGTCACAACCCGTCCAGCTCAACGGCAAGGAGTCGAAGAAAACGAAGGGTAAGCAGGCCACCGCCGAAAAATCCGACAAAGAGTTGACAAAGTCGAGCATGAAACAGGTGGAAAAGGAGCATAAAGAAGCGCTGGCCAGATTAGAAACGACCGATCCGGAACTGTTCGCCTTTTTGAAGAAGAATGACGAAAAACTGCTG-AATTCGGCCAGCTGGGCGGAAGCGATTCGGAATTCTCCGACTCGGAGAATGAGGCTGAAGACGAGGAGGGAGCTGTGCACGAATTGCCGGACAAGCTGGACGTTGCTAGTGACGAGAGCGACTTTGATCCTAATGAGGATGAAGACGAGCAAGGTCCCGGTGAGGTGGACGATGAAGATGAAGACGGTGAGGAAGAGGAGAAAGCCGCCGACGATGACGATGGCACGCCGGGCAAGAGGGTTACGTTTAAAATGCTGAAAGCATGGACCAACGATCTGACTACGCTGCCAATAAAGCACGTTCACGGTATCCGCAACATTTGCAAAGCTTTCAATTCGGCCCTGTACACCGTGACGGGAGATAAGAGCGTTATCCCGCCGTACCGCGTTGAAGGTTCGGCTATGTTTAACGGCATCGTACAAACGTGCGTTCTTTACCTTGGGCCGGCCCTTCGGAGCTATCTGGCATTGACCGAGAAGCGACAGTTTAAGGATCTGAAGAATGATTTCCGGTTCAAGAAGGTGAGGGCAAGCATAAAGACATACCTGATCGATCTGACCAACCTGCTCGAGAACGTCTCTTCGTCGCACATCATGTCCGTGCTGCTGAAACACTTGCACGAGTTTTCATCGATTCTGATCTGCTACCAGAACCTAACGAAACC]
[+] EMBL BM610690 [CCGCGGACGCGTGGGGGGCGACATAAAGAAAGCGAAATCTGTCGGGAAAGTAAAGAAAGTTGCTGCAAGCACGGCGGAACCGGACGAAGAAGTGAACGGAGCTGAAGAGCAAAAGTCTAAGAAGACGAAAAAGGTCAAGTCCGTCGATGCCGAGCAAAATGAGGCAATGAACGGCAAAGTGAAGAAAGGGAAAAAATTGAAGTCCGAAGCACAGCGGCCAGAGCTGAATGGAAAAGAGAAGAAAAAGAAACGCAAACTGGCCGAGCCAGAGGAAGCGGACAGCGATGACGGTTCCGACCATGATGCTGCCGGCTCGAATGCGAACAGCGTATTGAAGAAGAAAACGAAGAAGGTTAAGAAGGTAACTGAGCAGGCTGAGATGAATGGTAAAAAGAAAAAAACTAAAACCGAGTCACAACCCGTCCAGCTCAACGGCAAGGAGTCGAAGAAAACGAAGGGTAAGCAGGCCACCGCCGAAAAATCCGACAAAGAGTTGACAAAGTCGAGCATGAAACAGGTGGAAAAGGAGCATAAAGAAGCGCTGGCCAGATTAGAAACGACCGATCCGGAACTGTTCGCCTTTTTGAAGAAGAATGACGAAAAACTGCTG AATTCGGCCAGCTGGGCGGAAGCGATTCGGAATTCTCCGACTCGGAGAA ]
[+] EMBL BM604969 [ ccgCTGAGCAGGCTGAGATGAATGGTAAAAAGAAAAAAACTAAAACCGAGTCACAACCCGTCCAGCTCAACGGCAAGGAGTCGAAGAAAACGAAGGGTAAGCAGGCCACCGCCGAAACATCCGACAAAGAGTTGACAAAGTCGAGCATGAAACAGGTGGAAAAGGAGCATAAAGAAGCGCTGGCCAGATTGGAAACGACCGATCCGGAACTGTTCGCCTTTTTGAAGAAGAATGACGAAAAACTGCTGAAATTCGGCCAGCTGGGCGGAAGCGATTCGGAATTCTCCGACTCGGAGAATGAGGCTGAAGACGAGGAGGGAGCTGTGCACGAATTGCCGGACAAGCTGGACGTTGCTAGTGACGAGAGCGACTTTGATCCTAATGAGGATGAAGACGAGCAAGGTCCCGGTGAGGTGGACGATGAAGATGAAGACGGTGAGGAAGAGGAGAAAGCCGCCGACGATGACGATGGCACGCCGGGCAAGAGGGTTACGTTTAAAATGCTGAAAGCATGGACCAACGATCTGACTACGCTGCCAATAAAGCACGTTCACGGTATCCGCAACATTTGCAAAGCTTTCAATTCGGCCCTGTACACCGTGACGGGAGATAAGAGCGTTATCCCGCCGTACCGCGTTGAAGGTTCGGCTATGTTTAACGGCATCGTACAAACGTGCGTTCTTTACCTTGGGCCGGCCCT ]
[+] EMBL BM597238 [ ccgACGAATTGCCGGACAAGCTGGACGTTGCTAGTGACGAGAGCGACTTTGATCCTAATGAGGATGAAGACGAGCAAGGTCCCGGTGAGGTGGACGATGAAGATGAAGACGGTGAGGAAGAGGAGAAAGCCGCCGACGATGACGATGGCACGCCGGGCAAGAGGGTTACGTTTAAAATGCTGAAAGCATGGACCAACGATCTGACTACGCTGCCAATAAAGCACGTTCACGGTATCCGCAACATTTGCAAAGCTTTCAATTCGGCCCTGTACACCGTGACGGGAGATAAGAGCGTTATCCCGCCGTACCGCGTTGAAGGTTCGGCTATGTTTAACGGCATCGTACAAACGTGCGTTCTGTACCTTGGGCCGGCCCTTCGGAGCTATCTGGCATTGACCGAGAAGCGACAGTTTAAGGATCTGAAGAATGATTTCCGGTTCAAGAAGGTGAGGGCAAGCATAAAGACATACCTGATCGATCTGACCAACCTGCTCGAGAACGTCTCTTCGTCGCACATCATGTCCGTGCTGCTGAAACACTTGCACGAGTTTTCATCGATTCTGATCTGCTACCAGAACCTAACGAAACC]
consensusID : consensus_6201#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 671 fasta sequence
[CCGGCACCACCGGCAGGAGAAAACATCCTCAAAAATACGCTTTTTCCGTTTGTTTAACTGTTTTCTCGTTATAATTACATTTTAGTGTGGTTCTTCACAACTTCAAGATGAAGATCAAACAGTCAAAGAAAAAGGAAGACTTCCAGAACATGTCCCTGGACAACTTCTTGGACAACATGGATGCAGACGTTGGAGACGATGAGCAAGAGGCCAAACCGAAGAGTAAACTTAAATCTAATGGCATAGAAAAGGCCAAACACAAACAGGAAGCAAAGGGCGACATAAAGAAAGCGAAATCTGTCGGGAAAGTAAAGAAAGTTGCTGCAAGCACGGCGGAACCGGACGAAGAAGTGAACGGAGCTGAAGAGCAAAAGTCTAGGAAGACGAAAAAGGTCAAGTCCGTCGATGCCGAGCAAAATGAGGCAATGAACGGCAAAGTGAAGAAAGGGAAAAAATTGAAGTCCGAAGCACAGCGGCCAGAGCTGAATGGAAAAGAGAAGAAAAAGAAACGCAAACTGGCCGAGCCAGAGGAAGCGGACAGCGATGACGGTTCCGACCACGATGCTGCCGGCTCGAATGCGAACAGCGTATTGAAGAAGAAAACGAAGAAGGGTAAGAAGGTCCTGAGCAGGCTGAGATGAATGGTAAAAAGAAAAAACTAAACCGAGTCA]
[+] EMBL BM600659 [CCGGCACCACCGGCAGGAGAAAACATCCTCAAAAATACGCTTTTTCCGTTTGTTTAACTGTTTTCTCGTTATAATTACATTTTAGTGTGGTTCTTCACAACTTCAAGATGAAGATCAAACAGTCAAAGAAAAAGGAAGACTTCCAGAACATGTCCCTGGACAACTTCTTGGACAACATGGATGCAGACGTTGGAGACGATGAGCAAGAGGCCAAACCGAAGAGTAAACTTAAATCTAATGGCATAGAAAAGGCCAAACACAAACAGGAAGCAAAGGGCGACATAAAGAAAGCGAAATCTGTCGGGAAAGTAAAGAAAGTTGCTGCAAGCACGGCGGAACCGGACGAAGAAGTGAACGGAGCTGAAGAGCAAAAGTCTAGGAAGACGAAAAAGGTCAAGTCCGTCGATGCCGAGCAAAATGAGGCAATGAACGGCAAAGTGAAGAAAGGGAAAAAATTGAAGTCCGAAGCACAGCGGCCAGAGCTGAATGGAAAAGAGAAGAAAAAGAAACGCAAACTGGCCGAGCCAGAGGAAGCGGACAGCGATGACGGTTCCGACCACGATGCTGCCGGCTCGAATGCGAACAGCGTATTGAAGAAGAAAACGAAGAAGGGTAAGAAGGTCCTGAGCAGGCTGAGATGAATGGTAAAAAGAAAAAACTAAACCGAGTCA]
consensusID : consensus_6201#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 506 fasta sequence
[ACCCGGTCAGGCTCAACGGCANGGAGTCGAAGAANACGAAGGGTAAGCAGGCCACCGCCGCAAAAATCCGACAAAGAGATAGAAGAGCCACACACAGAGAGCGCCGGATACTGCTCTGGACACGGAAAAGTGTTGCCGAATATGATACACGACAGTAATGAAAAAAATTACCTCAAACTGCACGGAGAAAAGGAGCNCAAAAGAGGGAGTGGAATATAGGAGGCAGAAGGGAGGCATATACAACACATTTATCAATTTAGTAGACACCGCAACATAAGTATCACGTTACAACATACACACACATATTCAGAAACGAGACGAAAAATACGTACTAATAAGTATACTTACCAGGCACGGGCAGCAGTAGTAGTACTAAATACTACTACAAAGTATGCTTTCTATGATGCTCTAGACAGAGAACAAGAAAAACAAAAAAAATCATAACTCGTATTTGGCGGGTATTCCAAAACTTTAATAACGTATTAGACGCTAAAACCGAAATCGAA]
[+] EMBL AL933205 [ACCCGGTCAGGCTCAACGGCANGGAGTCGAAGAANACGAAGGGTAAGCAGGCCACCGCCGCAAAAATCCGACAAAGAGATAGAAGAGCCACACACAGAGAGCGCCGGATACTGCTCTGGACACGGAAAAGTGTTGCCGAATATGATACACGACAGTAATGAAAAAAATTACCTCAAACTGCACGGAGAAAAGGAGCNCAAAAGAGGGAGTGGAATATAGGAGGCAGAAGGGAGGCATATACAACACATTTATCAATTTAGTAGACACCGCAACATAAGTATCACGTTACAACATACACACACATATTCAGAAACGAGACGAAAAATACGTACTAATAAGTATACTTACCAGGCACGGGCAGCAGTAGTAGTACTAAATACTACTACAAAGTATGCTTTCTATGATGCTCTAGACAGAGAACAAGAAAAACAAAAAAAATCATAACTCGTATTTGGCGGGTATTCCAAAACTTTAATAACGTATTAGACGCTAAAACCGAAATCGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6201#0 ------------------------------------------------------------
consensus_6201#1 CCGGCACCACCGGCAGGAGAAAACATCCTCAAAAATACGCTTTTTCCGTTTGTTTAACTG 60
consensus_6201#2 ------------------------------------------------------------
consensus_6201#0 ------------------------------------------------------------
consensus_6201#1 TTTTCTCGTTATAATTACATTTTAGTGTGGTTCTTCACAACTTCAAGATGAAGATCAAAC 120
consensus_6201#2 ------------------------------------------------------------
consensus_6201#0 ------------------------------------------------------------
consensus_6201#1 AGTCAAAGAAAAAGGAAGACTTCCAGAACATGTCCCTGGACAACTTCTTGGACAACATGG 180
consensus_6201#2 ------------------------------------------------------------
consensus_6201#0 ------------------------------------------------------------
consensus_6201#1 ATGCAGACGTTGGAGACGATGAGCAAGAGGCCAAACCGAAGAGTAAACTTAAATCTAATG 240
consensus_6201#2 ------------------------------------------------------------
consensus_6201#0 ----------------CCGCGGACGCGTGG---GGGGCGACATAAAGAAAGCGAAATCTG 41
consensus_6201#1 GCATAGAAAAGGCCAAACACAAACAGGAAGCAAAGGGCGACATAAAGAAAGCGAAATCTG 300
consensus_6201#2 ------------------------ACCCGGTCAGGCTCAACGGCANGGAGTCGAAG---A 33
* * * ** * * * ****
consensus_6201#0 TCGGGAAAGTAAAGAAAGTTGCTGCAAGCACGGCGGAACCGGACGAAGAAGTGAACGGAG 101
consensus_6201#1 TCGGGAAAGTAAAGAAAGTTGCTGCAAGCACGGCGGAACCGGACGAAGAAGTGAACGGAG 360
consensus_6201#2 ANACGAAGGGTAAGCAGGCCACCGC-----CGCAAAAATCCGACAAAGAGATAGA-AGAG 87
*** * *** * * * ** ** ** * *** **** * * ***
consensus_6201#0 CTGAAGAGCAAAAGTCTAAGAAGACGAAAAAGGTCAAGTCCGTCGATGCCGAGCAAAATG 161
consensus_6201#1 CTGAAGAGCAAAAGTCTAGGAAGACGAAAAAGGTCAAGTCCGTCGATGCCGAGCAAAATG 420
consensus_6201#2 CCACACACAGAGAGCGCCGGATACTGCTCTGGACACGGAAAAGTGTTGCCGAATATGATA 147
* * * * ** ** * * * * ****** * **
consensus_6201#0 AGGCAATGAACGGCAAAGTGAAGAAAGGGAAAAAATTGAAGTCCGAAGCACAGCGGCCAG 221
consensus_6201#1 AGGCAATGAACGGCAAAGTGAAGAAAGGGAAAAAATTGAAGTCCGAAGCACAGCGGCCAG 480
consensus_6201#2 CACGACAGTAATGAAAAAAATTACCTCAAACTGCACGGAGAAAAGGAGCNCAAAAGAGGG 207
* * * * *** * * ** * *** ** * *
consensus_6201#0 AGCTGAATGGAAAAGAGAAGAAAAAGAAACGCAAACTGGCCGAGCCAGAGGAAGCGGACA 281
consensus_6201#1 AGCTGAATGGAAAAGAGAAGAAAAAGAAACGCAAACTGGCCGAGCCAGAGGAAGCGGACA 540
consensus_6201#2 AGTGGAATATAGGAGGCAGAAGGGAGGCATATACAACACATTTATCA-ATTTAGTAGACA 266
** **** * ** * * ** * * * ** * ** ****
consensus_6201#0 GCGATGACGGTTCCGACCATGATGCTGCCGGCTCGAATGCGAACAGCGTATTGAAGAAGA 341
consensus_6201#1 GCGATGACGGTTCCGACCACGATGCTGCCGGCTCGAATGCGAACAGCGTATTGAAGAAGA 600
consensus_6201#2 CCG-CAACA-TAAGTATCACGTTACAACATACACACACATATTCAGAAACGAGACGAAAA 324
** ** * * ** * * * * * * * *** ** *** *
consensus_6201#0 AAACGAAGAAGGTTAAGAAGGTAACTGAGCAGGCTGAGATGAATGGTAAAAAGAAAAAAA 401
consensus_6201#1 AAACGAAGAAGGGTAAGAAGGTC-CTGAGCAGGCTGAGATGAATGGTAAAAAGAAAAAAC 659
consensus_6201#2 ATACGTA-----CTAATAAGTATACTTACCAGGCACGGGC-AGCAGTAGTAGTACTAAAT 378
* *** * *** *** ** * ***** * * *** * * ***
consensus_6201#0 CTAAAACCGAGTCACAACCCGTCCAGCTCAACGGCAAGGAGTCGAAGAAAACGAAGGGTA 461
consensus_6201#1 T--AAACCGAGTCA---------------------------------------------- 671
consensus_6201#2 ACTACTACAAAGTATGCTTTCTATGATGCTCTAGACAGAGAACAAGAAAAACAAAAAAAA 438
* * * *
consensus_6201#0 A-GCAGGCCACCGCCGAAAAATCCGACAAAGAGTTGACAAAGTCGAGCATGAAACAGGTG 520
consensus_6201#1 ------------------------------------------------------------
consensus_6201#2 TCATAACTCGTATTTGGCGGGTATTCCAAAACTTTAATAACGTATTAGACGCTAAAACCG 498
consensus_6201#0 GAAAAGGAGCATAAAGAAGCGCTGGCCAGATTAGAAACGACCGATCCGGAACTGTTCGCC 580
consensus_6201#1 ------------------------------------------------------------
consensus_6201#2 AAATCGAA---------------------------------------------------- 506
consensus_6201#0 TTTTTGAAGAAGAATGACGAAAAACTGCTGAATTCGGCCAGCTGGGCGGAAGCGATTCGG 640
consensus_6201#1 ------------------------------------------------------------
consensus_6201#2 ------------------------------------------------------------
consensus_6201#0 AATTCTCCGACTCGGAGAATGAGGCTGAAGACGAGGAGGGAGCTGTGCACGAATTGCCGG 700
consensus_6201#1 ------------------------------------------------------------
consensus_6201#2 ------------------------------------------------------------
consensus_6201#0 ACAAGCTGGACGTTGCTAGTGACGAGAGCGACTTTGATCCTAATGAGGATGAAGACGAGC 760
consensus_6201#1 ------------------------------------------------------------
consensus_6201#2 ------------------------------------------------------------
consensus_6201#0 AAGGTCCCGGTGAGGTGGACGATGAAGATGAAGACGGTGAGGAAGAGGAGAAAGCCGCCG 820
consensus_6201#1 ------------------------------------------------------------
consensus_6201#2 ------------------------------------------------------------
consensus_6201#0 ACGATGACGATGGCACGCCGGGCAAGAGGGTTACGTTTAAAATGCTGAAAGCATGGACCA 880
consensus_6201#1 ------------------------------------------------------------
consensus_6201#2 ------------------------------------------------------------
consensus_6201#0 ACGATCTGACTACGCTGCCAATAAAGCACGTTCACGGTATCCGCAACATTTGCAAAGCTT 940
consensus_6201#1 ------------------------------------------------------------
consensus_6201#2 ------------------------------------------------------------
consensus_6201#0 TCAATTCGGCCCTGTACACCGTGACGGGAGATAAGAGCGTTATCCCGCCGTACCGCGTTG 1000
consensus_6201#1 ------------------------------------------------------------
consensus_6201#2 ------------------------------------------------------------
consensus_6201#0 AAGGTTCGGCTATGTTTAACGGCATCGTACAAACGTGCGTTCTTTACCTTGGGCCGGCCC 1060
consensus_6201#1 ------------------------------------------------------------
consensus_6201#2 ------------------------------------------------------------
consensus_6201#0 TTCGGAGCTATCTGGCATTGACCGAGAAGCGACAGTTTAAGGATCTGAAGAATGATTTCC 1120
consensus_6201#1 ------------------------------------------------------------
consensus_6201#2 ------------------------------------------------------------
consensus_6201#0 GGTTCAAGAAGGTGAGGGCAAGCATAAAGACATACCTGATCGATCTGACCAACCTGCTCG 1180
consensus_6201#1 ------------------------------------------------------------
consensus_6201#2 ------------------------------------------------------------
consensus_6201#0 AGAACGTCTCTTCGTCGCACATCATGTCCGTGCTGCTGAAACACTTGCACGAGTTTTCAT 1240
consensus_6201#1 ------------------------------------------------------------
consensus_6201#2 ------------------------------------------------------------
consensus_6201#0 CGATTCTGATCTGCTACCAGAACCTAACGAAACC 1274
consensus_6201#1 ----------------------------------
consensus_6201#2 ----------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||