cluster # 6209

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Anopheles gambiae
cluster # 6209 cluster # 6209 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6209#0 length = 859 sequences # 3

consensus_6209#1 length = 288 sequences # 1
consensus_6209#2 length = 247 sequences # 1

consensusID : consensus_6209#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 859
fasta sequence

                              [CCGCGAAATTCTTTCCATCACCGCTATGTTGGCGGTTCCACAGTGCTTCGTGCGACCAAACGAGATGAAGAAAGCGGCCGATGATGCTAAGATGCGCTTCGCGCACGTCGATGGCGACCATCTGACGCTGCTGAACGTGTACCATGCGTTTAAGCAGAACAATGAAGATCAGGGCTGGTGCTATGATAACTTCATCAACTACCGCTCCCTGAAGTCGGCCGACAATGTGAGACAGCAGCTAGCGCGCATCATGGACCGCTTCCAGCTGCAGCGCACCAGCACGGACTTCACCTCGAGAGAGTACTATTTTAACATTCCCAAAGCATTGGTACAGGGCTTCTTCATGCAGGTCGCACATTTGGAACGAACCAAGCACTATCAGACGATAAAGGACAACCAGGTGGTGCAGCTGCATCCGTCCACTTGTCTGGACCACAAACCGGAATGGGTAATTTACAACGAGTTTGTGCTGACGACGAAAAACTACATCA-GAACTGTCACGGATGTAAAGCCGGAATGGTTGCTGCAGATTGCCCCACAGTACTACGACATGAATAACTTCCCGCTGTGCGAGGCGAAACGGCAGCTCGAGCTGATACTGGCGCGCATGGACTCGAAGCAGTTCCAGCAAGGATTTTAAATAGTAATTATGCTCAAACTCTGATGCATCGCGCGCGCGTTTTAGCTATCCCTCTTCGTCATACCTTAATACTGCGCGCGAGGTAGCGAAGAGAGGACGCCAATGGCAAGCGGCACCCACGTGTGAGAGGTGAGAGCATTTCAATCAAAGAAAAGTATCCAGCTGCTTTTAAGTTTCTCCAGTTCTTTTTTGTGCGTCTCTGTCCCGTCAAAGCATCAT]

[+] EMBL BM587206             [CCGCGAAATTCTTTCCATCACCGCTATGTTGGCGGTTCCACAGTGCTTCGTGCGACCAAACGAGATGAAGAAAGCGGCCGATGATGCTAAGATGCGCTTCGCGCACGTCGATGGCGACCATCTGACGCTGCTGAACGTGTACCATGCGTTTAAGCAGAACAATGAAGATCAGGGCTGGTGCTATGATAACTTCATCAACTACCGCTCCCTGAAGTCGGCCGACAATGTGAGACAGCAGCTAGCGCGCATCATGGACCGCTTCCAGCTGCAGCGCACCAGCACGGACTTCACCTCGAGAGAGTACTATTTTAACATTCCCAAAGCATTGGTACAGGGCTTCTTCATGCAGGTCGCACATTTGGAACGAACCAAGCACTATCACACGATAAAGGACAACCAGGTGGGGCAGCTGCATCCGTCCACTTGTCTGGACCACAAACCGGAATGGGTCATTTACGACGAGTTTGTGCTGACGACTAAAAACTACATCATTAACTGTCACGGATGTAAAGCCGGAATGGTTGCTGCAGATTGCCCCACAGTACTACGACATGAATAACTTCCCGCTGTGCGATGC                                                                                                                                                                                                                                                                                           ]
[+] EMBL BX615852             [                                                       CCAAACGAGATGAAGAAAGCTGCCGATGATGCTAAGATGCGCTTCGCGCACGTCGATGGCGACCATCTGACGCTGCTGAACGTGTACCATGCGTTTAAGCAGAACAATGAAGATCAGGGCTGGTGCTATGATAACTTCATCAACTACCGCTCCCTGAAGTCGGCGGACAACGTGAGACAGCAGCTGGCGCGCATCATGGACCGCTTCCAGCTGCAGCGCACCAGCACGGACTTCACCTC  GAGAGTACTATTTTAACATTCGCAAAGCATTGGTACAGGGCTTCTTCATGCAGGTCGCACATTTGGAACGAACCAAGCACTATCAGACGATAAAGGACAACCAGGTGGTGCAGCTGCATCCGTCCACTTGTCTGGACCACAAACCGGAATGGGTAATTTACAACGAGTTTGTGCTGACGACGAAAAACTACATCA GAACTGTCACGGATGTAAAGCCGTAATGGTTGCTGCAGATTGCCCCACAGTACTACGACATGAATAACTTCCCTCTATGCGAGGCGAAACGGCAGCTCGAGCTGATACTGGCGCGCATGGACTCGAAGCAGTTCCAGCAAGGATTTTAAATAGTAATTATGCTCAAACTCTGATGCATCGCGCGCGCGTTTTA                                                                                                                                                                               ]
[+] EMBL BX601803             [                                                                                                                                                                                                                                                                                                                                                   CTTCATGCAGGTCGCACATTTGGAACGAACCAAGCACTATCAGACGATAAAGGACAACCAGGTGGTGCAGCTGCATCCGTCCACTTGTCTGGACCACAAACCGGAATGGGTAATTTACAACGAGTTTGTGCTGACGACGAAAAACTACATCA GAACTGTCACGGATGTAAAGCCGGAATGGTTGCTGCAGATTGCCCCACAGTACTACGACATGAATAACTTCCCGCTGTGCGAGGCGAAACGGCAGCTCGAGCTGATACTGGCGCGCATGGACTCGAAGCAGTTCCAGCAAGGATTTTAAAATGTAATTATGCTCAAACTCTGCTGCACCGCGCGCGCGTTTTAGCTATCCCTCTTCGTCATACCTTAATACTGCGCGCGAGGTAGCGAAGAGAGGACGCCAATGGCAAGCGGCACCCACGTGTGAGAGGTGAGAGCATTTCAATCAAAGAAAAGTATCCAGCTGCTTTTAAGTTTCTCCAGTTCTTTTTTGTGCGTCTCTGTCCCGTCAAAGCATCAT]




>consensus_6209#0
CCGCGAAATTCTTTCCATCACCGCTATGTTGGCGGTTCCACAGTGCTTCGTGCGACCAAA
CGAGATGAAGAAAGCGGCCGATGATGCTAAGATGCGCTTCGCGCACGTCGATGGCGACCA
TCTGACGCTGCTGAACGTGTACCATGCGTTTAAGCAGAACAATGAAGATCAGGGCTGGTG
CTATGATAACTTCATCAACTACCGCTCCCTGAAGTCGGCCGACAATGTGAGACAGCAGCT
AGCGCGCATCATGGACCGCTTCCAGCTGCAGCGCACCAGCACGGACTTCACCTCGAGAGA
GTACTATTTTAACATTCCCAAAGCATTGGTACAGGGCTTCTTCATGCAGGTCGCACATTT
GGAACGAACCAAGCACTATCAGACGATAAAGGACAACCAGGTGGTGCAGCTGCATCCGTC
CACTTGTCTGGACCACAAACCGGAATGGGTAATTTACAACGAGTTTGTGCTGACGACGAA
AAACTACATCAGAACTGTCACGGATGTAAAGCCGGAATGGTTGCTGCAGATTGCCCCACA
GTACTACGACATGAATAACTTCCCGCTGTGCGAGGCGAAACGGCAGCTCGAGCTGATACT
GGCGCGCATGGACTCGAAGCAGTTCCAGCAAGGATTTTAAATAGTAATTATGCTCAAACT
CTGATGCATCGCGCGCGCGTTTTAGCTATCCCTCTTCGTCATACCTTAATACTGCGCGCG
AGGTAGCGAAGAGAGGACGCCAATGGCAAGCGGCACCCACGTGTGAGAGGTGAGAGCATT
TCAATCAAAGAAAAGTATCCAGCTGCTTTTAAGTTTCTCCAGTTCTTTTTTGTGCGTCTC
TGTCCCGTCAAAGCATCAT

consensusID : consensus_6209#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 288
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGACGAGTTTGTGCTGACGACGAAAAACTACATCAGAACTGTCACGGATGTAAAGCCGGAATGGTTGCTGCAGATTGCCCCACAGTACTACCACATGAATAACTTCCCTCTATGCGAGGGGAAACGGGAGCTCCAGCTGATACTGGCGCGCATGGACTCCAAGCAGTTCCAGCAAGGATTTTAAAATGGAATTATGCTCAAACTCTGGTGGACCGCGCGCGCGTTTTAACTATCCCTCT]

[+] EMBL BM592192             [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGACGAGTTTGTGCTGACGACGAAAAACTACATCAGAACTGTCACGGATGTAAAGCCGGAATGGTTGCTGCAGATTGCCCCACAGTACTACCACATGAATAACTTCCCTCTATGCGAGGGGAAACGGGAGCTCCAGCTGATACTGGCGCGCATGGACTCCAAGCAGTTCCAGCAAGGATTTTAAAATGGAATTATGCTCAAACTCTGGTGGACCGCGCGCGCGTTTTAACTATCCCTCT]




>consensus_6209#1
CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGACGAGTTTG
TGCTGACGACGAAAAACTACATCAGAACTGTCACGGATGTAAAGCCGGAATGGTTGCTGC
AGATTGCCCCACAGTACTACCACATGAATAACTTCCCTCTATGCGAGGGGAAACGGGAGC
TCCAGCTGATACTGGCGCGCATGGACTCCAAGCAGTTCCAGCAAGGATTTTAAAATGGAA
TTATGCTCAAACTCTGGTGGACCGCGCGCGCGTTTTAACTATCCCTCT

consensusID : consensus_6209#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 247
fasta sequence

                              [CCGCGGACGCGTGGGAAGAAAAGTATCAATCTGCTTTTAAGTTTCTCCAGTTCTTTTTTGTGCGTCTCTGTCCCGTCAAAGCATCATCTCCATACCCATACCACAAACACAGAACGGTGCGATTATACAAAAAGTAGGCTTTTAGGGAAGTAACTTACCTTAATTTCTTTGCTTTCGGGATACTTTGCGCCCTGAAAACGCGGTATGTGGCTAAAGTCAGTAATAAAGGCAATAGATATGTACACAC]

[+] EMBL BM597393             [CCGCGGACGCGTGGGAAGAAAAGTATCAATCTGCTTTTAAGTTTCTCCAGTTCTTTTTTGTGCGTCTCTGTCCCGTCAAAGCATCATCTCCATACCCATACCACAAACACAGAACGGTGCGATTATACAAAAAGTAGGCTTTTAGGGAAGTAACTTACCTTAATTTCTTTGCTTTCGGGATACTTTGCGCCCTGAAAACGCGGTATGTGGCTAAAGTCAGTAATAAAGGCAATAGATATGTACACAC]




>consensus_6209#2
CCGCGGACGCGTGGGAAGAAAAGTATCAATCTGCTTTTAAGTTTCTCCAGTTCTTTTTTG
TGCGTCTCTGTCCCGTCAAAGCATCATCTCCATACCCATACCACAAACACAGAACGGTGC
GATTATACAAAAAGTAGGCTTTTAGGGAAGTAACTTACCTTAATTTCTTTGCTTTCGGGA
TACTTTGCGCCCTGAAAACGCGGTATGTGGCTAAAGTCAGTAATAAAGGCAATAGATATG
TACACAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6209#0      CCGCGAAATTCTTTCCATCACCGCTATGTTGGCGGTTCCACAGTGCTTCGTGCGACCAAA 60
consensus_6209#1      ------------------------------------------------------------
consensus_6209#2      ------------------------------------------------------------
                                                                                  

consensus_6209#0      CGAGATGAAGAAAGCGGCCGATGATGCTAAGATGCGCTTCGCGCACGTCGATGGCGACCA 120
consensus_6209#1      ------------------------------------------------------------
consensus_6209#2      ------------------------------------------------------------
                                                                                  

consensus_6209#0      TCTGACGCTGCTGAACGTGTACCATGCGTTTAAGCAGAACAATGAAGATCAGGGCTGGTG 180
consensus_6209#1      ------------------------------------------------------------
consensus_6209#2      ------------------------------------------------------------
                                                                                  

consensus_6209#0      CTATGATAACTTCATCAACTACCGCTCCCTGAAGTCGGCCGACAATGTGAGACAGCAGCT 240
consensus_6209#1      ------------------------------------------------------------
consensus_6209#2      ------------------------------------------------------------
                                                                                  

consensus_6209#0      AGCGCGCATCATGGACCGCTTCCAGCTGCAGCGCACCAGCACGGACTTCACCTCGAGAGA 300
consensus_6209#1      ------------------------------------------------------------
consensus_6209#2      ------------------------------------------------------------
                                                                                  

consensus_6209#0      GTACTATTTTAACATTCCCAAAGCATTGGTACAGGGCTTCTTCATGCAGGTCGCACATTT 360
consensus_6209#1      ------------------------------------------------------------
consensus_6209#2      ------------------------------------------------------------
                                                                                  

consensus_6209#0      GGAACGAACCAAGCACTATCAGACGATAAAGGACAACCAGGTGGTGCAGCTGCATCCGTC 420
consensus_6209#1      -------------------------------------------CCGCCCACGCGTCCGCC 17
consensus_6209#2      -----------------------------CCGCGGACGCGTGGGAAGAAAAGTATCAATC 31
                                                                         *  **   *

consensus_6209#0      CACTTGTCTGGACCACAAACCGGAATGGGTAATTTACAACGAGTTTGTGCTGACGACGAA 480
consensus_6209#1      CACGCGTCCGC-CCACGCGTCCGCCCACGCG---TCCGACGAGTTTGTGCTGACGACGAA 73
consensus_6209#2      TGCTTTTAAGTTTCTCCAGTTCTTTTTTGTG--------CGTCTCTGTCCCGTCAAAGCA 83
                        *   *  *   * *            *          **  * *** * * * * * *

consensus_6209#0      AAACTACATCAGAACTGTCACGGATGTAAAGCCGGAATGGTTGCTGCAGATTGCCCCACA 540
consensus_6209#1      AAACTACATCAGAACTGTCACGGATGTAAAGCCGGAATGGTTGCTGCAGATTGCCCCACA 133
consensus_6209#2      TCATCTCCATACCCATACCACAAACACAGAAC-GGTGCGATTA-TACAAAAAGT------ 135
                        *   *   *    *  ***  *   * * * **   * **  * ** *  *       

consensus_6209#0      GTACTACGACATGAATAACTTCCCGCTGTGCGAGGCGAAACGGCAGCTCGAGCTGATACT 600
consensus_6209#1      GTACTACCACATGAATAACTTCCCTCTATGCGAGGGGAAACGGGAGCTCCAGCTGATACT 193
consensus_6209#2      AGGCTTTTAGGGAAGTAACTTACCTTAATTTCTTTGCTTTCGGGATACTTTGC------- 188
                         **   *    * ****** **    *           *** *      **       

consensus_6209#0      GGCGCGCATGGACTCGAAGCAGTTCCAGCAAGGATTTTAAATAGTAATTATGCTCAAACT 660
consensus_6209#1      GGCGCGCATGGACTCCAAGCAGTTCCAGCAAGGATTTTAAAATGGAATTATGCTCAAACT 253
consensus_6209#2      GCCCTGAAAACGCGGTATGTGGCTAAAGTCAGTAATAAAGGCAATAGATATGTACACAC- 247
                      * *  * *    *   * *  * *  **  ** * *  *      *  ****  ** ** 

consensus_6209#0      CTGATGCATCGCGCGCGCGTTTTAGCTATCCCTCTTCGTCATACCTTAATACTGCGCGCG 720
consensus_6209#1      CTGGTGGACCGCGCGCGCGTTTTAACTATCCCTCT------------------------- 288
consensus_6209#2      ------------------------------------------------------------
                                                                                  

consensus_6209#0      AGGTAGCGAAGAGAGGACGCCAATGGCAAGCGGCACCCACGTGTGAGAGGTGAGAGCATT 780
consensus_6209#1      ------------------------------------------------------------
consensus_6209#2      ------------------------------------------------------------
                                                                                  

consensus_6209#0      TCAATCAAAGAAAAGTATCCAGCTGCTTTTAAGTTTCTCCAGTTCTTTTTTGTGCGTCTC 840
consensus_6209#1      ------------------------------------------------------------
consensus_6209#2      ------------------------------------------------------------
                                                                                  

consensus_6209#0      TGTCCCGTCAAAGCATCAT 859
consensus_6209#1      -------------------
consensus_6209#2      -------------------