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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6215#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1054 fasta sequence
[CCGCGTTGTCACGCATTTCATTTTACACATATCCACACGTTCAAAGTATTGAGACACCGATATTGGTTTATCGAATTTATTAGATCCATTTTTTACTAGACATACTGGATTGCATAGTAAATTATTTATTTCCCTTTCGCGTTCACACGGAAAACAAAATTATCCTTATTCGAAATAATAATAAGAATAACAATAATAATAACAGTAATAATAATAATAATAATAAGGCAATAAGGTTGTGTTACATAGTTATTAAAAGAGGCAACATTACACTATACTTCAGACAAGCGAGTTATATTAACATTACGACTATATAAACCTATTGCATTAGTAGAGTCCCTGCCGGGTCCCACCCGGGCAAAGGGTGTTAGCATAGTTTGTTCGGTTCTTGCCCAATATTTGAACAACATTAGTATAGTTTGAATTGCACGCCTGTTCCAAAGCTCTGTTTGAGTGGAGCAGGATCGTGTACTGTTCGCGGGCGTGTTTCATTTAACCATACAAACTAGAAGCCAACCACTGTCTCCGGGGCTGCACGATTGTTTTGGTAAGCACGACATGTGTTTGGTTTCTATTGGTAAAATACTGATTTCGGACAGTTTTTACCCTATCGATAATTGTGGCTAAATTGAGTAACGCCTCTCCCTCTCTGTCCTGACCATGTTCGGTCACAATCGGTACGTTTGTCCAACGCCAATTGGCTGTTGAATGTTTGTTTTCTTTTCTCATCAGTCTTTTTCAATCGTGCGTAATCTAAACCTAGCCGAAAAGCGAAGGTGCAGCATTGTCCTACCTATATACACGAGCAAATGCAAATAGTATGATAAACTAGTAGCTATAGATAGACACGTTTGTTTTTTTTTTAGCGTTATTAGCAACTAACAAACAGTTGCGGGGTGGAAACAAGTGTTGCGAACGGAACAGGTGTGTTACATTGCACAGGTGTGCAAGTGAAGAGAGGGTTGATTTTTAAACAAGCCCCGGAAAAAGGATGACAAACATGCAAAAGAAGCATACAAAACAAACGCTCATACACCGGCAGATTAATAGCGAT]
[+] EMBL BM611126 [CCGCGTTGTCACGCATTTCATTTTACACATATCCACACGTTCAAAGTATTGAGACACCGATATTGGTTTATCGAATTTATTAGATCCATTTTTTACTAGACATACTGGATTGCATAGTAAATTATTTATTTCCCTTTCGCGTTCACACGGAAAACAAAATTATCCTTATTCGAAATAATAATAAGAATAACAATAATAATAACAGTAATAATAATAATAATAATAAGGCAATAAGGTTGTGTTACATAGTTATTAAAAGAGGCAACATTACACTATACTTCAGACAAGCGAGTTATATTAACATTACGACTATATAAACCTATTGCATTAGTAGAGTCCCTGCCGGGTCCCACCCGGGCAAAGGGTGTTAGCATAGTTTGTTCGGTTCTTGCCCAATATTTGAACAACATTAGTATAGTTTGAATTGCACGCCTGTTCCAAAGCTCTGTTTGAGTGGAGCAGGATCGTGTACTGTTCGCGGGCGTGTTTCATTTAACCATACAAACTAGAAGCCAACCACTGTCTCCGGGGCTGCACGATTGTTTTGGTAAGCACGACATGTGTTTGGTTTCTATTGGTAAAATACTGATTTCGGACAGTTTTTACCCTATCGATAATTGTGGCTAAATTGAGTAACGCCTCTCCCTCTCTGTCCTGACCA ]
[+] EMBL BM635975 [ ccgGCCCAATATTTGAACAACATTAGTATAGTTTGAATTGCACGCCTGTTCCAAAGCTCTGTTTGAGTGGAGCAGGATCGTGTACTGTTCGCGGGCGTGTTTCATTTAACCATACAAACTAGAAGCCAACCACTGTCTCCGGGGCTGCACGATTGTTTTGGTAAGCACGACATGTGTTTGGTTTCTATTGGTAAAATACTGATTTCGGACAGTTTTTACCCTATCGATAATTGTGGCTAAATTGAGTAACGCCTCTCCCTCTCTGTCCTGACCATGTTCGGTCACAATCGGTACGTTTGTCCAACGCCAATTGGCTGTTGAATGTTTGTTTTCTTTTCTCATCAGTCTTTTTCAATCGTGCGTAATCTAAACCTAGCCGAAAAGCGAAGGTGCAGCATTGTCCTACCTATATACACGAGCAAATGCAAATAGTATGATAAACTAGTAGCTATAGATAGACACGTTTGTTTTTTTTTTAGCGTTATTAGCAACTAACAAACAGTTGCGGGGTGGAAACAAGTGTTGCGAACGGAACAGGTGTGTTACATTGCACAGGTGTGCAAGTGAAGAGAGGGTTGATTTTTAAACAAGCCCCGGAAAAAGGATGACAAACATGCAAAAGAAGCATACAAAACAAACGCTCATACACCGGCAGATTAATAGCGAT]
consensusID : consensus_6215#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 998 fasta sequence
[GGATTAATATAAGGCAATAAGGTTGTGTTACATAGTTATTANAAGAGGCAACATTACACTATACTTCAGACAAGCGAGTTATATTAACATTACGACTATATAAACCTATTGGATTAGTAGAGTCCCTGCCGGGTCCCACCCGGGCAAAGGGTGTTAGCATAGTTTGTTCGGTTCTTGCCCAATATTTGAACAACATTAGTATAGTTTGAATTGCACGCCTGTTCCAAAGCTCTGTTTGAGTGGAGCAGGATCGTGTACTGTTCGCGGGCGTGTTTCATTTAACCATACAAACTAGAAGCCAACCAGGACGGAACCACTGTCTCCGGGGCTGCACGATTGTTTNNGGTAAGCACGACATGTGTTGGTTTCTATTGGTAAAATACTGAATTTGGATAGTTTTTACCCTATCGATAATTGTTGCTAAATTGAGTAACGCCTCTCCCTCTCTGTCCTGACCATGTTCGGTCACAATCGGTACGTTTGTCCAACGCCAATTGGCTGTGAATGTNTGTTCTTTTCTCATCAGTCTTTTTCAATCGTGCGTAATCTAAACCTAGCTGAAAAGCGAAGGTGCAGCATTGTCCTACCTATATACACGAGCAAATGCAAATAGTATGATAAACTAGTAGCTATAGATAGACACGTTTGTTTTTTTTTTAGCGTTATTAGCAACTAACAAACAGTTGCGGGGTGGAAACAAGTGTTGCGAACGAACAGGTGTGTTACATTGCACAGGTGTGCAAGTGAAGAGAGGGTTGATTTTTAAACAAGCCCCGGAAAAAGGGTGACAAACATGCAAAAGAAGCATACAAAACAAACGCTCATACACCGGCAGATATTCGCTGTGAGGAGGGGGTTACAGTTTAATAGCGATTGTGATTTTCGTAATCATAATTTTACACGCCCCATAGCGTCCAGGGTGCTATGGCTAAAATCTAAGACGACCTGCACATTAACTAGCCCTGTATGTTATTAAGGCGATTCAAGCTCTACCAAGC]
[+] EMBL AL694278 [GGATTAATATAAGGCAATAAGGTTGTGTTACATAGTTATTANAAGAGGCAACATTACACTATACTTCAGACAAGCGAGTTATATTAACATTACGACTATATAAACCTATTGGATTAGTAGAGTCCCTGCCGGGTCCCACCCGGGCAAAGGGTGTTAGCATAGTTTGTTCGGTTCTTGCCCAATATTTGAACAACATTAGTATAGTTTGAATTGCACGCCTGTTCCAAAGCTCTGTTTGAGTGGAGCAGGATCGTGTACTGTTCGCGGGCGTGTTTCATTTAACCATACAAACTAGAAGCCAACCAGGACGGAACCACTGTCTCCGGGGCTGCACGATTGTTTNNGGTAAGCACGACATGTGTTGGTTTCTATTGGTAAAATACTGAATTTGGATAGTTTTTACCCTATCGATAATTGTTGCTAAATTGAGTAACGCCTCTCCCTCTCTGTCCTGACCATGTTCGGTCACAATCGGTACGTTTGTCCAACGCCAATTGGCTGTGAATGTNTGTTCTTTTCTCATCAGTCTTTTTCAATCGTGCGTAATCTAAACCTAGCTGAAAAGCGAAGGTGCAGCATTGTCCTACCTATATACACGAGCAAATG ]
[-] EMBL BX627648 [ TTTTTCAATCGTGCGTAATCTAAACCTAGCTGAAAAGCGAAGGTGCAGCATTGTCCTACCTATATACACGAGCAAATGCAAATAGTATGATAAACTAGTAGCTATAGATAGACACGTTTGTTTTTTTTTTAGCGTTATTAGCAACTAACAAACAGTTGCGGGGTGGAAACAAGTGTTGCGAACGAACAGGTGTGTTACATTGCACAGGTGTGCAAGTGAAGAGAGGGTTGATTTTTAAACAAGCCCCGGAAAAAGGGTGACAAACATGCAAAAGAAGCATACAAAACAAACGCTCATACACCGGCAGATATTCGCTGTGAGGAGGGGGTTACAGTTTAATAGCGATTGTGATTTTCGTAATCATAATTTTACACGCCCCATAGCGTCCAGGGTGCTATGGCTAAAATCTAAGACGACCTGCACATTAACTAGCCCTGTATGTTATTAAGGCGATTCAAGCTCTACCAAGC]
consensusID : consensus_6215#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 866 fasta sequence
[CCGCGGTTATTTTACTGTTCGAGATTTACCCTATTTACGAAACTCNTGGGTAAGGTAGAGAACACACACTACTAATACCGCGGGGTACGTTAGTACCGCGCTAAACACAACCCGAAACTCGAAAACAATCGAAACGTGTGCTATGGTAGAGCTTGAATCGCCTTAATAACATACAGGGCTAGTTAATGTGCAGGTCGTCTTAGATTTTAGCCATAGCACCCTGGACGCTATGNGGGCGTGTANNCATTCATGCTTACGAAAATCACCAATCGCTCATTAACACTNGTAAAACCCCCTCCCTTCACAGACGAACATATTCTAGACCGGGTGTTAATTGAGGCCGTATATCAGTTATCTACGGTAATAGACTATACCTNTATATAGGCATTTGGTACATAGGTTACAACCCCCTATATAATCTACCCCGCGACGGCCATACTGGCTCTTAAANAAAANACTACCGAAAAGCAGCCATCTTACGTACTTATCCCACCGTTTGCCAACCACCCGTTGGTTGGCAAAAATGTTTNAAAACCACCAAACCCTTCGGATTATACCGGTATNCCCCGCACACACGCAACNTCATTGGTAACTACACAAGGCACCCCGGCTCCACACGCCTTCGGGGTCACANAGGGCGTNTCACCNCCNTCTCGGGCCCCTCTACACACCTTCAACACCCCGNNCGTTACACACCGACCTCCCCCCCACACAACATCCCCAAAAGAACCGGTTTAGCATTACACTCTCAGTTCTCTGAACATTNAGNCNCCTTAACCCCTAAGCTTATGTANAAACTTTCCCCAGTTTAAACCCGTCACCATCTCTCGCAGGCCCNCNCTCTCCCANGGACCCCTTCCCCGCGA]
[+] EMBL AL693003 [CCGCGGTTATTTTACTGTTCGAGATTTACCCTATTTACGAAACTCNTGGGTAAGGTAGAGAACACACACTACTAATACCGCGGGGTACGTTAGTACCGCGCTAAACACAACCCGAAACTCGAAAACAATCGAAACGTGTGCTATGGTAGAGCTTGAATCGCCTTAATAACATACAGGGCTAGTTAATGTGCAGGTCGTCTTAGATTTTAGCCATAGCACCCTGGACGCTATGNGGGCGTGTANNCATTCATGCTTACGAAAATCACCAATCGCTCATTAACACTNGTAAAACCCCCTCCCTTCACAGACGAACATATTCTAGACCGGGTGTTAATTGAGGCCGTATATCAGTTATCTACGGTAATAGACTATACCTNTATATAGGCATTTGGTACATAGGTTACAACCCCCTATATAATCTACCCCGCGACGGCCATACTGGCTCTTAAANAAAANACTACCGAAAAGCAGCCATCTTACGTACTTATCCCACCGTTTGCCAACCACCCGTTGGTTGGCAAAAATGTTTNAAAACCACCAAACCCTTCGGATTATACCGGTATNCCCCGCACACACGCAACNTCATTGGTAACTACACAAGGCACCCCGGCTCCACACGCCTTCGGGGTCACANAGGGCGTNTCACCNCCNTCTCGGGCCCCTCTACACACCTTCAACACCCCGNNCGTTACACACCGACCTCCCCCCCACACAACATCCCCAAAAGAACCGGTTTAGCATTACACTCTCAGTTCTCTGAACATTNAGNCNCCTTAACCCCTAAGCTTATGTANAAACTTTCCCCAGTTTAAACCCGTCACCATCTCTCGCAGGCCCNCNCTCTCCCANGGACCCCTTCCCCGCGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6215#0 CCGCGTTGTCACGCATTTCATTTTACACATATCCACACGTTCAAAGTATTGAGACACCGA 60
consensus_6215#1 ------------------------------------------------------------
consensus_6215#2 ------------------------------------------------------------
consensus_6215#0 TATTGGTTTATCGAATTTATTAGATCCATTTTTTACTAGACATACTGGATTGCATAGTAA 120
consensus_6215#1 ------------------------------------------------------------
consensus_6215#2 ------------------------------------------------------------
consensus_6215#0 ATTATTTATTTCCCTTTCGCGTTCACACGGAAAACAAAATTATCCTTATTCGAAATAATA 180
consensus_6215#1 ------------------------------------------------------------
consensus_6215#2 -------------------------------------------------------CCGCG 5
consensus_6215#0 ATAAGAATAACAAT-AATAATAACAGTAATAATAATAATAATAA-TAAGGCAATAAGGTT 238
consensus_6215#1 ----------------------------------GGATTAATA--TAAGGCAATAAGGTT 24
consensus_6215#2 GTTATTTTACTGTTCGAGATTTACCCTATTTACGAAACTCNTGGGTAAGGTAGAGAACAC 65
* * * ***** * *
consensus_6215#0 GTGTTACATAGTTATTAAAAGAGGCAACATTA-CACTATACTTCAGACAAGC-GAGTTAT 296
consensus_6215#1 GTGTTACATAGTTATTANAAGAGGCAACATTA-CACTATACTTCAGACAAGC-GAGTTAT 82
consensus_6215#2 ACACTAC-----TAATACCGCGGGGTACGTTAGTACCGCGCTAAACACAACCCGAAACTC 120
*** ** ** ** ** *** ** ** * **** * **
consensus_6215#0 ATTAACATTACGACTATATAAACCTATTGCATTAGTAGAGTCCCTGCCGGGTCCCACCCG 356
consensus_6215#1 ATTAACATTACGACTATATAAACCTATTGGATTAGTAGAGTCCCTGCCGGGTCCCACCCG 142
consensus_6215#2 GAAAACAATCGAAACGTGTG---CTATGGTAGAGCTTGAATCGCCTTAATAACATACAGG 177
**** * * * * **** * * * ** ** * * ** *
consensus_6215#0 GGCAAAGGGTGTTAGCATAGTTTGTTCGGTTCTTGCC-CAATATT-TGAACAACATTAGT 414
consensus_6215#1 GGCAAAGGGTGTTAGCATAGTTTGTTCGGTTCTTGCC-CAATATT-TGAACAACATTAGT 200
consensus_6215#2 GCTAGTTAATGT--GCAGGTCGTCTTAGATTTTAGCCATAGCACCCTGGACGCTATGNGG 235
* * *** *** * ** * ** * *** * * ** ** ** *
consensus_6215#0 ATAGTTTGAATTGCACGCCTG------TTCCAAAGCTCTGTTTGAGTGGAGCAGGATCGT 468
consensus_6215#1 ATAGTTTGAATTGCACGCCTG------TTCCAAAGCTCTGTTTGAGTGGAGCAGGATCGT 254
consensus_6215#2 GCGTGTANNCATTCATGCTTACGAAAATCACCAATCGCTCATTAACACTNGTAAAACCCC 295
* * ** ** * * * ** * ** ** * * * * *
consensus_6215#0 GTACTGTTCGCGGGCGTGTTTCATTTA-ACCATACAA-ACTAGAAGCCAACCA------- 519
consensus_6215#1 GTACTGTTCGCGGGCGTGTTTCATTTA-ACCATACAA-ACTAGAAGCCAACCAGGACGGA 312
consensus_6215#2 CT-CCCTTCACAGACGAACATATTCTAGACCGGGTGTTAATTGAGGCCGTATATCA---- 350
* * *** * * ** * * ** *** * * ** *** *
consensus_6215#0 ----CTGTCTCCGGGGCTGCACGATTGTTTTGG-TAAGCACG----ACATGTGTTTGGTT 570
consensus_6215#1 ACCACTGTCTCCGGGGCTGCACGATTGTTTNNGGTAAGCACG----ACATGTGTT-GGTT 367
consensus_6215#2 ---GTTATCTACGGTAATAGACTATACCTNTATATAGGCATTTGGTACATAGGTTACAAC 407
* *** *** * ** ** * ** *** **** ***
consensus_6215#0 TCTATTGGTAAAATACTGATTTCGGACAGTTTTTACCCTATCGATAATTGTGGCTAAATT 630
consensus_6215#1 TCTATTGGTAAAATACTGAATTTGGATAGTTTTTACCCTATCGATAATTGTTGCTAAATT 427
consensus_6215#2 CCCCTATATAATCTACCCCGCGACGGCCATACTGGCTCTTAAANAAAANACTACCGAA-- 465
* * *** *** * * * * ** ** * **
consensus_6215#0 GAGTAACGCCTCTCCCTCTCTGTCCTGACCATGTTCGGTCACAATCGGTACGTTTGTCCA 690
consensus_6215#1 GAGTAACGCCTCTCCCTCTCTGTCCTGACCATGTTCGGTCACAATCGGTACGTTTGTCCA 487
consensus_6215#2 AAGCAGCCATCTTACGTACTTATCCCACC---GTTTGCCAACCACCCGTTGGTTGGCAAA 522
** * * * * * * *** * *** * ** * * ** *** * *
consensus_6215#0 A-CGCCAATTGGCTGTTGAATGTTTGTTTTCTTTTCTCATCAGTCTTTTTCAATCGTGCG 749
consensus_6215#1 A-CGCCAATTGGCTGT-GAATGTNTGTT--CTTTTCTCATCAGTCTTTTTCAATCGTGCG 543
consensus_6215#2 AATGTTTNAAAACCACCAAACCCTT-----CGGATTATACCGGTATNCCCCGCACACACG 577
* * * ** * * * * * ** * * * **
consensus_6215#0 TAATCTAAACCTAGCCGAAAAGCGAAGGTGCAGCATTGTCCTACCTATATACACGAGCAA 809
consensus_6215#1 TAATCTAAACCTAGCTGAAAAGCGAAGGTGCAGCATTGTCCTACCTATATACACGAGCAA 603
consensus_6215#2 CAACNT---CATTGGTAACTACACAAGGCAC--------CCCGGCTCCACACGCCTTCGG 626
** * * * * * * **** * ** ** * ** * *
consensus_6215#0 ATGCAAATAGTATGATAAACTAGTAGCTATAGATAGACACGTTTGTTTTTTTTTTAGCGT 869
consensus_6215#1 ATGCAAATAGTATGATAAACTAGTAGCTATAGATAGACACGTTTGTTTTTTTTTTAGCGT 663
consensus_6215#2 GGTCACANAGGGCGTNTCACCNCCNTCT-----CGGGCCCCTCTACACACCTTC-AACAC 680
** * ** * ** ** * * * * * ** * *
consensus_6215#0 TATTAGCAACTAACAAACAGTTGCGGGGTGGAAACAAGTGTTGCGAACGGAACAGGT--G 927
consensus_6215#1 TATTAGCAACTAACAAACAGTTGCGGGGTGGAAACAAGTGTTGCGAACG-AACAGGT--G 720
consensus_6215#2 CCCGNNCG--TTACACACCGACCTCCCCCCCACACAACATCCCCAAAAGAACCGGTTTAG 738
* * *** ** * * **** * ** * * * * * *
consensus_6215#0 TGTTACATTGCACAGGTGTGCAAGTGAAGAGAGGG-TTGATTTTTAAACAAGCCCCGGAA 986
consensus_6215#1 TGTTACATTGCACAGGTGTGCAAGTGAAGAGAGGG-TTGATTTTTAAACAAGCCCCGGAA 779
consensus_6215#2 CATTACACT-CTCAGTTCTCTGAACATTNAGNCNCCTTAACCCCTAAGC---TTATGTAN 794
***** * * *** * * * ** ** * *** * * *
consensus_6215#0 AAAGGATGACAAACATGCAAAAGA-AGCATACAAAACAAACGCTCATACACCGGCAGATT 1045
consensus_6215#1 AAAGGGTGACAAACATGCAAAAGA-AGCATACAAAACAAACGCTCATACACCGGCAGAT- 837
consensus_6215#2 AAACTTTCCCCAGTTTAAACCCGTCACCATCTCTCGCAGGCCCNCNCTCTCCCANGGACC 854
*** * * * * * * * *** ** * * * * ** **
consensus_6215#0 -AATAGCGAT-------------------------------------------------- 1054
consensus_6215#1 -ATTCGCTGTGAGGAGGGGGTTACAGTTTAATAGCGATTGTGATTTTCGTAATCATAATT 896
consensus_6215#2 CCTTCCCCGCGA------------------------------------------------ 866
* *
consensus_6215#0 ------------------------------------------------------------
consensus_6215#1 TTACACGCCCCATAGCGTCCAGGGTGCTATGGCTAAAATCTAAGACGACCTGCACATTAA 956
consensus_6215#2 ------------------------------------------------------------
consensus_6215#0 ------------------------------------------
consensus_6215#1 CTAGCCCTGTATGTTATTAAGGCGATTCAAGCTCTACCAAGC 998
consensus_6215#2 ------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||