These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6218#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 849 fasta sequence [ATATATGATGTAGTTAAATGACGTAACGGACCAAACTATTGTTTTTCTGTTAAAAATTTGAGTTAAGAAGATAAAACACTCTTAAACGATGCAGCGAACACCGGTGACAATGCTCACAATCAGCATCTCGCAGCATTGAAGAATCTACTGAAACGAACAGTCCACCTACCAGCATGACGGGCTCATCAACCCACGCTCGTCGTGTTTTGTTCAAGCGTGTGGAAAGCGCTGGTGGAAGCCACGGCGTATGACATTCCACTCCATGGTAACACTGGTGACTTGCAACGGTCGGCATGCAGTTGGTACCAAGTGGTAGAACAAGAACAAAAAAACCGATATATCTATATCCTTTGTCCACACACACACCGTTCTAAAGTTTGCGCTGCTTCGGATGCTGTTACCTAGCCTTTCATGCAGGTAGTGGATCAATTACAAGCAGAAAAAAAAGATAGAAGCAGATGTCACGCGGCACAAAATTGTTTTTCATTTAAAAAGTTTTTTGGTCGCGTACATTGCGTTAGAAAATCGGTTAAAAAAAGGAAAAAGGACTGTAAAAACACACACACGCTGAGAGAGCTTCATCATATAACAACGACAGCAGGGCAATTGAAACAGGTTAGTCAGGTGTGCTCTGTCTGACAAGAAATAGCAACAAAAACCAAACGAACACTCTGCAAGGTATCAGTGTCAGTTGCAGTGCGGAAGAGTGTAAGTAAATAGCATCCACTTAACGTCCACTCGATTGGTCGTGTAGTGATATAGTGAAGTGAGATACATGCGCTTGTGAC-AAATAAAATCTGCACAGCGTGTTACTCCGTAGCGGGAATTGGAACAGGTAATCGCTTTCAT] [+] EMBL BX612096 [ATATATGATGTAGTTAAATGACGTAACGGACCAAACTATTGTTTTTCTGTTAAAAATTTGAGTTAAGAAGATAAAACACTCTTAAACGATGCAGCGAACACCGGTGACAATGCTCACAATCAGCATCTCGCAGCATTGAAGAATCTACTGAAACGAACAGTCCACCTACCAGCATGACGGGCTCATCAACCCACGCTCGTCGTGTTTTGTTCAAGCGTGTGGAAAGCGCTGGTGGAAGCCACGGCGTATGACATTCCACTCCATGGTAACACTGGTGACTTGCAACGGTCGGCATGCAGTTGGTACCAAGTGGTAGAACAAGAACAAAAAAACCGATATATCTATATCCTTTGTCCACACACACACCGTTCTAAAGTTTGCGCTGCTTCGGATGCTGTTACCTAGCCTTTCATGCAGGTAGTGGATCAATTACAAGCAGAAAAAAAAGATAGAAGCAGATGTCACGCGGCACAAAATTGTTTTTCATTTAAAAAGTTTTTTGGTCGCGTACATTGCGTTAG ] [+] EMBL BX610359 [ ATTTGAGTTAAGAAGATAAAACACTCTTAAACGATGCAGCGAACACCGGTGACAATGCTCACAATCAGCATCTCGCAGCATTGAAGAATCTACTGAAACGAACAGTCCACCTACCAGCATGACGGGCTCATCAACCCACGCTCGTCGTGTTTTGTTCAAGCGTGTGGAAAGCGCTGGTGGAAGCCACGGCGTATGACATTCCACTCCATGGTAACACTGGTGACTTGCAACGGTCGGCATGCAGTTGGTACCAAGTGGTAGAACAAGAACAAAAAAACCGATATATCTATATCCTTTGTCCACACACACACCGTTCTAAAGTTTGCGCTGCTTCGGATGCTGTTACCTAGCCTTTCATGCAGGTAGTGGATCAATTACAAGCAGAAAAAAAAGATAGAAGCAGATGTCACGCGGCACAAAATTGTTTTTCATTTAAAAAGTTTTTTGGTCGCGTACATTGCGTTAGAAAATCGGTTAAAAAAAGGAAAAAGGACTGTAAAAACACACACACGCTGAGAGAGCTTCATCATATAACAACGACAGCAGGGCAATTGAAACAGGTTAGTCAGGTGTGCTCTGTCTGACAAGAAATAGCAACAAAAACCAAACGAACACTCTGCAAGGTATCAGTGTCAGTTGCAGTGCGGAAGAGTGTAAGTAAATAGCATCCACTTAACGTCCACTCGATTGGTCGTGTAGTGATATAGTGAAGTGAGATACATGCGCTTGTGAC AAATAA ] [+] EMBL BX609200 [ AAGAAGATAAAACACTCTTAAACGTTGCAGCGAACACCGGTGACAATGCTCACAATCAGCATCTCGCAGCATTGAAGAATCTACTGAAACGAACAGTCCACCTACCAGCATGACGGGCTCATCAACCCACGCTCGTCGTGTTTTGTTCAAGCGTGTGGAAAGCGCTGGTGGAAGCCACGGCGTATGACATTCCACTCCATGGTAACACTGGTGACTTGCAACGGTCGGCATGCAGTTGGTACCAAGTGGTAGAACAAGAACAAAAAAACCGATATATCTATATCCTTTGTCCACACACACACCGTTCTAAAGTTTGCGCTGCTTCGGATGCTGTTACCTAGCCTTTCATGCAGGTAGTGGATCAATTACAAGCAGAAAAAAAAGATAGAAGCAGATGTCACGCGGCACAAAATTGTTTTTCATTTAAAAAGTTTTTTGGTCGCGTACATTGCGTTAGAAAATCGGTTAAAAAAAGGAAAAAGGACTGTAAAAACACACACACGCTGAGAGAGCTTCATCATATAACAACGACAGCAGGGCAATTGAAACAGGTTAGTCAGGTGTGCTCTGTCTGACAAGAAATAGCAACAAAAACCAAACGAACACTCTGCAAGGTATCAGTGTCAGTTGCAGTGCGGAAGAGTGTAAGTAAATAGCATCCACTTAACGTCCACTCGATTGGTCGTGTAGTGATATAGTGAAGTGAGATACATGCGCTTGTGACAAAATAAAATCTGCACAGCGTGTTACTCCGTAGCGGGAATTGGAACAGGTAATCGCTTTCAT] consensusID : consensus_6218#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 668 fasta sequence [ATGACGTAACGGACCAAACTATTGTTTTTCTGTTAAAAATTTGAGTTAAGAAGATAAAACACTCTTAAACGATGCAGCGAACACCGGTGACAATGCTCACAATCAGCATCTCGCAGCATTGAAGAATCTACTGAAACGAACAGTCCACCTACCAGCATGACGGGCTCATCAACCCACGCTCGTCGTGTTTTGTTCAAGCGTGTGGAAAGCGCTGGTGGAAGCCACGGCGTATGACATTCCACTCCATGGTAACACTGGTGACTTGCAACGGTCGGCATGCAGTTGGTACCAAGTGGTAGAACAAGAACAAAAAAACCGATATATCAATTACAAGCAGAAAAAAAAGATAGAAGCAGATGTCACGCGGCACAAAATTGTTTTTCATTTAAAAAGTTTTTTGGTCGCGTACATTGCGTTAGAAAATCGGTTAAAAAAAGGAAAAAGGACTGTAAAAACACACACACGCTGAGAGAGCTTCATCATATAACAACGACAGCAGGGCAATTGAAACAGGTTAGTCAGGTGTGCTCTGTCTGACAAGAAATAGCAACAAAAACCAAACGAACACTCTGCAAGGTATCAGTGTCAGTTGCAGTGCGGAAGAGTGTAAGTAAATAGCATCCACTTAACGTCCACTCGATTGGTCGTGTAGTGATATAGTGAAGTGA] [+] EMBL BX609032 [ATGACGTAACGGACCAAACTATTGTTTTTCTGTTAAAAATTTGAGTTAAGAAGATAAAACACTCTTAAACGATGCAGCGAACACCGGTGACAATGCTCACAATCAGCATCTCGCAGCATTGAAGAATCTACTGAAACGAACAGTCCACCTACCAGCATGACGGGCTCATCAACCCACGCTCGTCGTGTTTTGTTCAAGCGTGTGGAAAGCGCTGGTGGAAGCCACGGCGTATGACATTCCACTCCATGGTAACACTGGTGACTTGCAACGGTCGGCATGCAGTTGGTACCAAGTGGTAGAACAAGAACAAAAAAACCGATATATCAATTACAAGCAGAAAAAAAAGATAGAAGCAGATGTCACGCGGCACAAAATTGTTTTTCATTTAAAAAGTTTTTTGGTCGCGTACATTGCGTTAGAAAATCGGTTAAAAAAAGGAAAAAGGACTGTAAAAACACACACACGCTGAGAGAGCTTCATCATATAACAACGACAGCAGGGCAATTGAAACAGGTTAGTCAGGTGTGCTCTGTCTGACAAGAAATAGCAACAAAAACCAAACGAACACTCTGCAAGGTATCAGTGTCAGTTGCAGTGCGGAAGAGTGTAAGTAAATAGCATCCACTTAACGTCCACTCGATTGGTCGTGTAGTGATATAGTGAAGTGA] [+] EMBL BX616516 [ atgGAGTTAAGAAGAAAAAACACTCTGAAACGAAGCAGCGAACACCGGTGACAATGCTCACAATCAGCATCTCGCAGCATTGAAGAATCTACTGAAACGAACAGTCCACCTACCAGCAGGACGGGCTCATCAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6218#0 ATATATGATGTAGTTAAATGACGTAACGGACCAAACTATTGTTTTTCTGTTAAAAATTTG 60 consensus_6218#1 -----------------ATGACGTAACGGACCAAACTATTGTTTTTCTGTTAAAAATTTG 43 ******************************************* consensus_6218#0 AGTTAAGAAGATAAAACACTCTTAAACGATGCAGCGAACACCGGTGACAATGCTCACAAT 120 consensus_6218#1 AGTTAAGAAGATAAAACACTCTTAAACGATGCAGCGAACACCGGTGACAATGCTCACAAT 103 ************************************************************ consensus_6218#0 CAGCATCTCGCAGCATTGAAGAATCTACTGAAACGAACAGTCCACCTACCAGCATGACGG 180 consensus_6218#1 CAGCATCTCGCAGCATTGAAGAATCTACTGAAACGAACAGTCCACCTACCAGCATGACGG 163 ************************************************************ consensus_6218#0 GCTCATCAACCCACGCTCGTCGTGTTTTGTTCAAGCGTGTGGAAAGCGCTGGTGGAAGCC 240 consensus_6218#1 GCTCATCAACCCACGCTCGTCGTGTTTTGTTCAAGCGTGTGGAAAGCGCTGGTGGAAGCC 223 ************************************************************ consensus_6218#0 ACGGCGTATGACATTCCACTCCATGGTAACACTGGTGACTTGCAACGGTCGGCATGCAGT 300 consensus_6218#1 ACGGCGTATGACATTCCACTCCATGGTAACACTGGTGACTTGCAACGGTCGGCATGCAGT 283 ************************************************************ consensus_6218#0 TGGTACCAAGTGGTAGAACAAGAACAAAAAAACCGATATATCTATATCCTTTGTCCACAC 360 consensus_6218#1 TGGTACCAAGTGGTAGAACAAGAACAAAAAAACCGATAT--------------------- 322 *************************************** consensus_6218#0 ACACACCGTTCTAAAGTTTGCGCTGCTTCGGATGCTGTTACCTAGCCTTTCATGCAGGTA 420 consensus_6218#1 ------------------------------------------------------------ consensus_6218#0 GTGGATCAATTACAAGCAGAAAAAAAAGATAGAAGCAGATGTCACGCGGCACAAAATTGT 480 consensus_6218#1 ----ATCAATTACAAGCAGAAAAAAAAGATAGAAGCAGATGTCACGCGGCACAAAATTGT 378 ******************************************************** consensus_6218#0 TTTTCATTTAAAAAGTTTTTTGGTCGCGTACATTGCGTTAGAAAATCGGTTAAAAAAAGG 540 consensus_6218#1 TTTTCATTTAAAAAGTTTTTTGGTCGCGTACATTGCGTTAGAAAATCGGTTAAAAAAAGG 438 ************************************************************ consensus_6218#0 AAAAAGGACTGTAAAAACACACACACGCTGAGAGAGCTTCATCATATAACAACGACAGCA 600 consensus_6218#1 AAAAAGGACTGTAAAAACACACACACGCTGAGAGAGCTTCATCATATAACAACGACAGCA 498 ************************************************************ consensus_6218#0 GGGCAATTGAAACAGGTTAGTCAGGTGTGCTCTGTCTGACAAGAAATAGCAACAAAAACC 660 consensus_6218#1 GGGCAATTGAAACAGGTTAGTCAGGTGTGCTCTGTCTGACAAGAAATAGCAACAAAAACC 558 ************************************************************ consensus_6218#0 AAACGAACACTCTGCAAGGTATCAGTGTCAGTTGCAGTGCGGAAGAGTGTAAGTAAATAG 720 consensus_6218#1 AAACGAACACTCTGCAAGGTATCAGTGTCAGTTGCAGTGCGGAAGAGTGTAAGTAAATAG 618 ************************************************************ consensus_6218#0 CATCCACTTAACGTCCACTCGATTGGTCGTGTAGTGATATAGTGAAGTGAGATACATGCG 780 consensus_6218#1 CATCCACTTAACGTCCACTCGATTGGTCGTGTAGTGATATAGTGAAGTGA---------- 668 ************************************************** consensus_6218#0 CTTGTGACAAATAAAATCTGCACAGCGTGTTACTCCGTAGCGGGAATTGGAACAGGTAAT 840 consensus_6218#1 ------------------------------------------------------------ consensus_6218#0 CGCTTTCAT 849 consensus_6218#1 --------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||