cluster # 6226

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Anopheles gambiae
cluster # 6226 cluster # 6226 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6226#0 length = 639 sequences # 2

consensus_6226#1 length = 528 sequences # 3

consensusID : consensus_6226#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 639
fasta sequence

                              [GGCAAGAATCGCGCACGAGGTTTATCTGATCAGGCATACTTAATCCATTATATTCAATGGTTTATGCTCGATCTTTTTTAATTTCATTAGCCAATAATTGTCGAAACTGCAGCTACTGTTTATAGCAGGTTGCAAGATCACGTGAAAGAACAGAAATATTATTGAGACGCAAGTACAACTTAATGGGGCCCTTTCCGTTTTAAGTTCGTAGGCTGAAATTTCAGCCTGTCAGCTGTATGCATTGTATAGCAGTTGTTCGAGCAGCTATCTAAGGTGAGTTTAATATACAGGTGGGCTTATCCCAAGTTTTGTGTATTCGTCAAGCCTCCAGGAAAGCTTTGAGTAAAAGCTTTCAGCCGTGCTTGAGAGACAAAGTGGTATTCAAAAATGGTCTATAATAACAGTGCTGAGACNCGCACCTTGAGGACTACGATACAGCTTGTGATNTTGCGGATTACCGTCACCAGATCTCTTTAGATGCACCTTGGGGTAAAGTGTAAACACCAGCCGTGCCATTTTGTTCGAGCAGGTACGTCGAATCTNGATTCTAGCTTTGAGGCTAGAATAATCTAGACTGTNNACATTGCAGGCTAGTNGTNNACTGTGTGGCTATACGGTATGGAGTATNNGACATGATTC]

[+] EMBL BX468048             [GGCAAGAATCGCGCACGAGGTTTATCTGATCAGGCATACTTAATCCATTATATTCAATGGTTTATGCTCGATCTTTTTTAATTTCATTAGCCAATAATTGTCGAAACTGCAGCTACTGTTTATAGCAGGTTGCAAGATCACGTGAAAGAACAGAAATATTATTGAGACGCAAGTACAACTTAATGGGGCCCTTTCCGTTTTAAGTTCGTAGGCTGAAATTTCAGCCTGTCAGCTGTATGCATTGTATAGCAGTTGTTCGAGCAGCTATCTAAGGTGAGTTTAATATACAGGTGGGCTTATCCCAAGTTTTGTGTATTCGTCAAGCCTCCAGGAAAGCTTTGAGTAAAAGCTTTCAGCCGTGCTTGAGAGACAAAGTGGTATTCAAAAATGGTCTATAATAACAGTGCTGAGACNCGCACCTTGAGGACTACGATACAGCTTGTGATNTTGCGGATTACCGTCACCAGATCTCTTTAGATGCACCTTGGGGTAAAGTGTAAACACCAGCCGTGCCATTTTGTTCGAGCAGGTACGTCGAATCTNGATTCTAGCTTTGAGGCTAGAATAATCTAGACTGTNNACATTGCAGGCTAGTNGTNNACTGTGTGGCTATACGGTATGGAGTATNNGACATGATTC]
[+] EMBL BX609861             [                                                                                                                                                                                                                   GCTGAAATTTCAGCCTGTCAGCTGTATGCATTGTATAGCAGTT TTCGAGCAGCTATCTAA GTGAGTTTAATATACAGGTGGGCTTATCCCAAGTTTTGTGTATTCGTCAAGCCTCCAG                                                                                                                                                                                                                                                                                                                    ]




>consensus_6226#0
GGCAAGAATCGCGCACGAGGTTTATCTGATCAGGCATACTTAATCCATTATATTCAATGG
TTTATGCTCGATCTTTTTTAATTTCATTAGCCAATAATTGTCGAAACTGCAGCTACTGTT
TATAGCAGGTTGCAAGATCACGTGAAAGAACAGAAATATTATTGAGACGCAAGTACAACT
TAATGGGGCCCTTTCCGTTTTAAGTTCGTAGGCTGAAATTTCAGCCTGTCAGCTGTATGC
ATTGTATAGCAGTTGTTCGAGCAGCTATCTAAGGTGAGTTTAATATACAGGTGGGCTTAT
CCCAAGTTTTGTGTATTCGTCAAGCCTCCAGGAAAGCTTTGAGTAAAAGCTTTCAGCCGT
GCTTGAGAGACAAAGTGGTATTCAAAAATGGTCTATAATAACAGTGCTGAGACNCGCACC
TTGAGGACTACGATACAGCTTGTGATNTTGCGGATTACCGTCACCAGATCTCTTTAGATG
CACCTTGGGGTAAAGTGTAAACACCAGCCGTGCCATTTTGTTCGAGCAGGTACGTCGAAT
CTNGATTCTAGCTTTGAGGCTAGAATAATCTAGACTGTNNACATTGCAGGCTAGTNGTNN
ACTGTGTGGCTATACGGTATGGAGTATNNGACATGATTC

consensusID : consensus_6226#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 528
fasta sequence

                              [CCGGTTTGTAGTTTTGTTACAGTAACCAAATCAAAGAATCATGAAGTTCCTTATGAAAGTGTTCCTGTCTGCACTGCTCGCCCTTGCGGTACTGGTGTCAGCTCAACCTGAAGAGACAAATGTCAACATTGGGCCCTTTCCGTTGTAAGTTC---GTAGGCTGAAATTTCAGCCTGTCAGCTGTTTACATTGTATAGCAGTTTTCGAGCAGCTATCTAAAAAAACTACGAGAGCCGTTGCCAAAAACATGGAACGAAGAAGGACTGCTGGGTGACTGGTCCTACCACTGCACCATCGGCCAAAAAACCTCGCGCTTAATGATCGCATCGAACAATCGCAATGGTGAACGAGTTCCGCTTATTGTAATTTTAAAATAAAAAGCATCTGAAGCGGCAGTAGCAGAATTCGTTCGTTCTATTGTAAGATGTTGCAAGATGTAAATGTTTGAAAACGACTATTGTCCTACACCTTCTTGCAATGACCAAAACCCAAACATATTACTGTAGAAATATTCACCAATCACAAACATTT]

[+] EMBL BM636871             [CCGGTTTGTAGTTTTGTTACAGTAACCAAATCAAAGAATCATGAAGTTCCTTATGAAAGTGTTCCTGTCTGCACTGCTCGCCCTTGCGGTACTGGTGTCAGCTCAACCTGAAGAGACAAATGTCAACATTGGGCCCTTTCCGTTGTAAGTTC   GTAGGCTGAAATTTCAGCCTGTCAGCTGTTTACATTGTATAGCAGTTTTCGAGCAGCTATCTAAAAAAACTACGAGAGCCGTTGCCAAAAACATGGAACGAAGAAGGACTGCTGGGTGACTGGTCCTACCACTGCACCATCGGCCAAAAAACCTCGCGCTTAATGATCGCATCGAACAATCGCAATGGTGAACGAGTTCCGCTTATTGTAATTTTAAAATAAAAAGCATCTGAAGCGGCAGTAGCAGAATTCGTTCGTTCTATTGTAAGATGTTGCAAGATGTAAATGTTTGAAAACG                                                                              ]
[+] EMBL BM648052             [            ccgGTTACAGTAACCAAATCAAAGAATCATGAAGTTCCTTATGAAAGTGTTCCTGTCTGCACTGCTCGCCCTTGCGGTACTGGTGTCAGCTCAACCTGAAGAGACAAATGTCAACATTGGGCCCTTTCCGTTGTAAGTCCGCTGTAAGCTGAAATTTCAGCCTGTCAGCTGTTTGCATTGTATAGCAGTTTTCGAGCAGCTATCTAAAAAAACTACGAGAGCCGTTGCCAAAAACATGGAACGAAGAAGGACTGCTGGGTGACTGGTCCTACCACTGCACCATCGGCCAAAAAACCTCGCGCTTAATGATCGCATCGAACAATCGCAATGGTGAACGAGTTCCGCTTATTGTAATTTTAAAATAAAAAGCATCTGAAGCGGCAGTAGCAGAATTCGTTCGTTCTATTGTAAGATGTTGCAAGATGTAAATGTTTGAAAACGACTATTGTCCTACACCTTCTTGCAATGACCAAAACCCAAACATATTACTGTAGAAATATTCACCAATCACAAACA   ]
[+] EMBL BM616873             [                                                                               ccgCTTGCGGTACTGGTGTCAGCTCAACCTGAAGAGACAAATGTCAACATTGGGCCCTTTCCGTTGTAAGTTC   GTAGGCTGAAATTTCAGCCTGTCAGCTGTTTACATTGTATAGCAGTTTTCGAGCAGCTATCTAAAAAAACTACGAGAGCCGTTGCCAAAAACATGGAACGAAGAAGGACTGCTGGGTGACTGGTCCTACCACTGCACCATCGGCCAAAAAACCTCGCGCTTAATGATCGCATCGAACAATCGCAATGGTGAACGAGTTCCGCTTATTGTAATTTTAAAATAAAAAGCATCTGAAGCGGCAGTAGCAGAATTCGTTCGTTCTATTGTAAGATGTTGCAAGATGTAAATGTTTGAAAACGACTATTGTCCTACACCTTCTTGCAATGACCAAAACCCAAACATATTACTGTAGAAATATTCACCAATCACAAACATTT]




>consensus_6226#1
CCGGTTTGTAGTTTTGTTACAGTAACCAAATCAAAGAATCATGAAGTTCCTTATGAAAGT
GTTCCTGTCTGCACTGCTCGCCCTTGCGGTACTGGTGTCAGCTCAACCTGAAGAGACAAA
TGTCAACATTGGGCCCTTTCCGTTGTAAGTTCGTAGGCTGAAATTTCAGCCTGTCAGCTG
TTTACATTGTATAGCAGTTTTCGAGCAGCTATCTAAAAAAACTACGAGAGCCGTTGCCAA
AAACATGGAACGAAGAAGGACTGCTGGGTGACTGGTCCTACCACTGCACCATCGGCCAAA
AAACCTCGCGCTTAATGATCGCATCGAACAATCGCAATGGTGAACGAGTTCCGCTTATTG
TAATTTTAAAATAAAAAGCATCTGAAGCGGCAGTAGCAGAATTCGTTCGTTCTATTGTAA
GATGTTGCAAGATGTAAATGTTTGAAAACGACTATTGTCCTACACCTTCTTGCAATGACC
AAAACCCAAACATATTACTGTAGAAATATTCACCAATCACAAACATTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6226#0      GGCAAGAATCGCGCACGAGGTTTATCTGATCAGGCATACTTAATCCATTATATTCAATGG 60
consensus_6226#1      --------------------------------------------------------CCGG 4
                                                                                **

consensus_6226#0      TTTATGCTCGATCTTTTTTAATTTCATTAGCCAATAATTGTCGAAACTGCAGCTACTGTT 120
consensus_6226#1      TTTGTAGTTTTGTTACAGTAACCAAATCAAAGAATCAT-GAAGTTCCTTATGAAAGTGTT 63
                      *** *  *     *    ***    ** *   *** ** *  *   **   *  * ****

consensus_6226#0      TATAGCAG-GTTGCAAGATCACGTGAAAGAACAGAAATATTA---TTGAGACGCAAGTAC 176
consensus_6226#1      CCTGTCTGCACTGCTCGCCCTTGCGGTACTGGTGTCAGCTCAACCTGAAGAGACAAATGT 123
                        *  * *   ***  *  *  * *  *     *  *  * *   *  ***  *** *  

consensus_6226#0      AACTTAATGGGGCCCTTTCCGTTTTAAGTTCGTAGGCTGAAATTTCAGCCTGTCAGCTGT 236
consensus_6226#1      CAAC--ATTGGGCCCTTTCCGTTGTAAGTTCGTAGGCTGAAATTTCAGCCTGTCAGCTGT 181
                       *    ** ************** ************************************

consensus_6226#0      ATGCATTGTATAGCAGTTGTTCGAGCAGCTATCTAAGGTGAGTTTAATATACAGGTGGGC 296
consensus_6226#1      TTACATTGTATAGCAGTT-TTCGAGCAGCTATCTAAAAAAACT---------ACGAGAGC 231
                       * *************** *****************    * *         * * * **

consensus_6226#0      TTATCCCAAGTTTTGTGTATTCGTCAAGCCTCCAGGAAAGCTTTGAGTAAAAGCTTTCAG 356
consensus_6226#1      CGTTGCCAAAAACATGGAACGAAGAAGGACTGCTGGGTGACT---GGTCCTACCACTGCA 288
                         * ****       * *      * * ** * **    **    **   * *  *   

consensus_6226#0      CCGTGCTTGAGAGACAAAGTGGTATTCAAAAATGGTCTATAATAACAGTGCTGAGACNCG 416
consensus_6226#1      CCAT--CGGCCAAAAAACCTCGCGCTTAATGATCGCATCGAACAATCGCAATGGTGAACG 346
                      ** *    *  * * **  * *   * **  ** *  *  ** **  *   **     **

consensus_6226#0      CACCTTGAGGACTACGATAC--AGCTTGTGATNTTGCGGATTACCGTCACCAGATCTCTT 474
consensus_6226#1      AGTTCCGCTTATTGTAATTTTAAAATAAAAAGCATCTGAAGCGGCAGTAGCAGAATTCGT 406
                            *   * *   **    *  *    *   *  * *    *   * ****  ** *

consensus_6226#0      TAGATGCACCTTGGGGTAAAGTGTAAACACCAGCCGTGCCATTTTGTTCGAGCAGGTACG 534
consensus_6226#1      TCGTTCTATTGTAAGATG--TTGCAAGATGTAAATGT----TTGAAAACGACTAT-TGTC 459
                      * * *  *   *  * *    ** **     *   **    **     ***  *  *   

consensus_6226#0      TCGAATCTNGATTCTAGCTTTGAGGCTAGAATAATCTAGACTGTNNACATTGCAGGCTAG 594
consensus_6226#1      CTACACCTTCTTGCAATGACCAAAACCCAAACATATTA--CTGTAGAAAT-ATTCACCAA 516
                          * **   * * *      *  *   ** *   **  ****  * **      * * 

consensus_6226#0      TNGTNNACTGTGTGGCTATACGGTATGGAGTATNNGACATGATTC 639
consensus_6226#1      TCACAAACATTT--------------------------------- 528
                      *     **  *