These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6240#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1141 fasta sequence [CCGCTCTCTCGTATGCACAACACTGCCGGGTGCTGGTTTTTTGTTTGTCCAGTTAGAAACTTCAGTATTTGTTTCGACATTAGTCCTTTCTTGGTGCTTTTCCACTCTATTTTCGGTGGCAGCTCAGTGTTACTAGCAGGCTTAAAGTGTAGTCAAATTACGAACATTCCGGTGCTCACCCAGTGCCAGGCCACTGGGAACTGATATATAAACCATCGCTAAATAAAGATGGTGTTTAGAAGCTGTAGGCAACATTTCTTTAGGAAGCTTCCATTTCCCAACTATCCCGAGAGACGTATTTTTCTATTTCTTTCATAAATCACTGTCCATGTTTTTCCTTGCAAATTTTCCCTCCATGCTTTTTAGGATAACATTTTTCGAATTAAATTATCTCTAGCTAGTCTTGCTATTGCCTCAAACAAACGTGATGATGAGAGAGGAATGCTGATTTTAGGAAGCTTTTTCGCTGCCTACTTGATCGCTGCAACGTTGGCAAGCTTACGGTTTGGGTGGCGTTTAGGGAGGTTTAGGAGCCGCATGGTAGATAGAAACTTCAGTTCCTGCCCTTTCTGGTGTAGTCAACATGGATTTTACGTACATCACAAGCATAATGTTAAATGATTTACTCCTTTTTTATTCAGACTCCAAAAGTATCTTATTTTTTCTAGTCCAATGAACAACGAATACACATTTCATTTTCTATTTCCCTGTTCTAGAAGCTGTTTAAACGCCCTCTAATGCAGTACTGTATAAATCTTGCTTACTGATCGTACATACAATACAAACTCTCTCACACACAATCGATTCAAGTCCGGTTCCGACCCTTTCCGCAAAACAAAACAAAACAAAAAACACTCTTAAGGAAAAAGCTCGTGTAAACCCNATCNGATGGACGAATCAATGAGAGGTAACCAGGCAAAGCTGTAANATNNAGCAAGACCCATCCCCCATCCTCNATGTTGNCGGGTAAATTGAAGAATTGNAACTCCGCCACCGGGGCTTCTTAATNCGNTNACNTTTCCCACCAGTTCTTTTTGNTTTAAGCCATTCCTTTTTTTTTCTCTCNNGCTTTGGAGAAANGATCAGCACACTCNGTACGCACTGTCTTGCTACCTGTACACCTGTNCCAAAGCAACCACTT] [+] EMBL BM640563 [CCGCTCTCTCGTATGCACAACACTGCCGGGTGCTGGTTTTTTGTTTGTCCAGTTAGAAACTTCAGTATTTGTTTCGACATTAGTCCTTTCTTGGTGCTTTTCCACTCTATTTTCGGTGGCAGCTCAGTGTTACTAGCAGGCTTAAAGTGTAGTCAAATTACGAACATTCCGGTGCTCACCCAGTGCCAGGCCACTGGGAACTGATATATAAACCATCGCTAAATAAAGATGGTGTTTAGAAGCTGTAGGCAACATTTCTTTAGGAAGCTTCCATTTCCCAACTATCCCGAGAGACGTATTTTTCTATTTCTTTCATAAATCACTGTCCATGTTTTTCCTTGCAAATTTTCCCTCCATGCTTTTTAGGATAACATTTTTCGAATTAAATTATCTCTAGCTAGTCTTGCTATTGCCTCAAACAAACGTGATGATGAGAGAGGAATGCTGATTTTAGGAAGCTTTTTCGCTGCCTACTTGATCGCTGCAACGTTGGCAAGCTTACGGTTTGGGTGGCGTTTAGGGAGGTTTAGGAGCCGCATGGTAGATAGAAACTTCAGTTCCTGCCCTTTCTGGTGTAGTCAACATGGATTTTACGTACATCACAAGCATAATGTTAAATGATTTACTCCTTTTTTATTCAGACTCCAAAAGTATCTTATTTTTTCTAGTCCAATGAACAACGAATAC ] [+] EMBL BX619089 [ GCATGGTAGATAGAAACTTCAGTTCCTGCCCTTTCTGGTGTAGTCAACATGGATTTTACGTACATCACAAGCATAATGTTAAATGATTTACTCCTTTTTTATTCAGACTCCAAAAGTATCTTATTTTTTCTAGTCCAATGAACAACGAATACACATTTCATTTTCTATTTCCCTGTTCTAGAAGCTGTTTAAACGCCCTCTAATGCAGTACTGTATAAATCTTGCTTACTGATCGTACATACAATACAAACTCTCTCACACACAATCGATTCAAGTCCGGTTCCGACCCTTTCCGCAAAACAAAACAAAACAAAAAACACTCTTAAGGAAAAAGCTCGTGTAAACCCNATCNGATGGACGAATCAATGAGAGGTAACCAGGCAAAGCTGTAANATNNAGCAAGACCCATCCCCCATCCTCNATGTTGNCGGGTAAATTGAAGAATTGNAACTCCGCCACCGGGGCTTCTTAATNCGNTNACNTTTCCCACCAGTTCTTTTTGNTTTAAGCCATTCCTTTTTTTTTCTCTCNNGCTTTGGAGAAANGATCAGCACACTCNGTACGCACTGTCTTGCTACCTGTACACCTGTNCCAAAGCAACCACTT] consensusID : consensus_6240#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 702 fasta sequence [CCGATTTACTCCTTTTTTATTCAGACTCCAAAAGTATCTTATTTTTTCTAGTCCAATGAACAACGAATACACATTTCATTTTCTATTTCCCTGTTCTAGAAGCTGTTTAAACGCCCTCTAATGCAGTACTGTATAAATCTTGCTTACTGATCGTACATACAATACAAACTCTCTCACACACAATCGATTCAAGTCCGGTTCCGACCCTTTCCGCAAAACAAAACAAAACAAAAAACACTCTTAAGGAAAAGCTCGTGTAAACCCATCGATGGACGAATCAATGAGAGGTAACAGGCAAAGCTGTAAATTAGAAGACAATCCCCATTTCATGTGCGGTAATGAGATGAACTCGCACGGCTCTTATCGTACTTCCACAGTCTTTGTTTAGCATCCTTTTTTTCTCTCAAGCTTTGGAGAAAGGATCAGCACAATCTGTACGCACTGTTTTGCTACCTGTACACCTGTTCAAAGCACCACTTTCTTATACATATATCGGCAAAATACGATATAGCTTTATGTAAGACAACACCACTCCCTGTAGAACTGTAACAACATCTACATCTTTCTGCCTATTTTTAAAACAATGCAGTCACATAGGGTACATTCTTGAAGAGCAAATCGATCAGTGGAGGAATAATACAGTGCTGCAATTATAGGGTGAAGTAACTCTAACTTTATTTAAAAAATACTTTCTTTCTATAC] [+] EMBL BM627397 [CCGATTTACTCCTTTTTTATTCAGACTCCAAAAGTATCTTATTTTTTCTAGTCCAATGAACAACGAATACACATTTCATTTTCTATTTCCCTGTTCTAGAAGCTGTTTAAACGCCCTCTAATGCAGTACTGTATAAATCTTGCTTACTGATCGTACATACAATACAAACTCTCTCACACACAATCGATTCAAGTCCGGTTCCGACCCTTTCCGCAAAACAAAACAAAACAAAAAACACTCTTAAGGAAAAGCTCGTGTAAACCCATCGATGGACGAATCAATGAGAGGTAACAGGCAAAGCTGTAAATTAGAAGACAATCCCCATTTCATGTGCGGTAATGAGATGAACTCGCACGGCTCTTATCGTACTTCCACAGTCTTTGTTTAGCATCCTTTTTTTCTCTCAAGCTTTGGAGAAAGGATCAGCACAATCTGTACGCACTGTTTTGCTACCTGTACACCTGTTCAAAGCACCACTTTCTTATACATATATCGGCAAAATACGATATAGCTTTATGTAAGACAACACCACTCCCTGTAGAACTGTAACAACATCTACATCTTTCTGCCTATTTTTAAAACAATGCAG ] [+] EMBL BX620236 [ ACTCTTAAGGAAAAGCTCGTGTAAACCCATCGATGGACGAATCAATGAGAGGTAACAGGCAAAGCTGTAAATTAGAAGACAATCCCCATTTCATGTGCGGTAATGAGATGAACTCGCTCGGCTCTTATCGTACTTCCACAGTCTTTGTTTAGCATCCTCTTTTTCTCTCAAGCTTTGGAGAAAGGATCAGCACAATCTGTACGCACTGTTTTGCTACCTGTACACCTGTTCAAAGCACCACTTTCTTATACATATATCGGCAAAATACGATATAGCTTTATGTAAGACAACACCACTCCCTGTAGAACTGTAACTACATCTACATCTTTCTGCCTATTTTTACAACAATGCAGTCACATAGGGTACATTCTTGAAGAGCAAATCGATCAGTGGAGGAATAATACAGTGCTGCAATTATAGGGTGAAGTAACTCTAACTTTATTTAAAAAATACTTTCTTTCTATAC] consensusID : consensus_6240#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 669 fasta sequence [GAATTGCCCGAGGTTATTTCTAGTCAATGAACAACGAATACACATTTCATTTTCTATTTCCCTGTTCTAGAAGCTGTTCAAACGCCCTCTAATGCAGTACTGTAACGAGGCGTACAAAACAGGCTTAGATAAAACGCCCTCTAATGCAGTACTGTAAAAATCTTGCTTACTGATCGTACATACAATACAAACTCTCTCACACACAATTGATTCAAGTCCGGTTCCGACCCTTTCCGCAAAACCAAAAACAAAAACAAAAAACACTCTTTAAGGAAAAAGCTCGTGTAAACCCATCGATGGACGAATCACATGACGAGGTAACAGGCAAAGCTGTAACATTANGAAGACAAATCCCCATTTCATGTGCGGTAAATTGAGATGAACTCGCTCGGCTCTTAATCGTACCTTCCACAGACTTAGTNTAGCCATTCCTCTTTTTCTCTCAAGCTTTGGAGACAAGGATCCAGACAATCTGGTACGCACTTGTNATAGCGTACCTGGTACACCTGTTCAAAGCACCATTTCTTATACCAGTATATCGGGCCAACATACGCATTCTAGCCTTTATGTAAGACANCAACCACTTCCCTGGTAGACACTGTGAACCTACATCTACAATCNTTATCTGGCTTATATTACAACCAAATGCCAGTCACCTTAGCGGTACAT] [+] EMBL AL692899 [GAATTGCCCGAGGTTATTTCTAGTCAATGAACAACGAATACACATTTCATTTTCTATTTCCCTGTTCTAGAAGCTGTTCAAACGCCCTCTAATGCAGTACTGTAACGAGGCGTACAAAACAGGCTTAGATAAAACGCCCTCTAATGCAGTACTGTAAAAATCTTGCTTACTGATCGTACATACAATACAAACTCTCTCACACACAATTGATTCAAGTCCGGTTCCGACCCTTTCCGCAAAACCAAAAACAAAAACAAAAAACACTCTTTAAGGAAAAAGCTCGTGTAAACCCATCGATGGACGAATCACATGACGAGGTAACAGGCAAAGCTGTAACATTANGAAGACAAATCCCCATTTCATGTGCGGTAAATTGAGATGAACTCGCTCGGCTCTTAATCGTACCTTCCACAGACTTAGTNTAGCCATTCCTCTTTTTCTCTCAAGCTTTGGAGACAAGGATCCAGACAATCTGGTACGCACTTGTNATAGCGTACCTGGTACACCTGTTCAAAGCACCATTTCTTATACCAGTATATCGGGCCAACATACGCATTCTAGCCTTTATGTAAGACANCAACCACTTCCCTGGTAGACACTGTGAACCTACATCTACAATCNTTATCTGGCTTATATTACAACCAAATGCCAGTCACCTTAGCGGTACAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6240#1 ------------------------------------------------------------ consensus_6240#2 ------------------------------------------------------------ consensus_6240#0 CCGCTCTCTCGTATGCACAACACTGCCGGGTGCTGGTTTTTTGTTTGTCCAGTTAGAAAC 60 consensus_6240#1 ------------------------------------------------------------ consensus_6240#2 ------------------------------------------------------------ consensus_6240#0 TTCAGTATTTGTTTCGACATTAGTCCTTTCTTGGTGCTTTTCCACTCTATTTTCGGTGGC 120 consensus_6240#1 ------------------------------------------------------------ consensus_6240#2 ------------------------------------------------------------ consensus_6240#0 AGCTCAGTGTTACTAGCAGGCTTAAAGTGTAGTCAAATTACGAACATTCCGGTGCTCACC 180 consensus_6240#1 ------------------------------------------------------------ consensus_6240#2 ------------------------------------------------------------ consensus_6240#0 CAGTGCCAGGCCACTGGGAACTGATATATAAACCATCGCTAAATAAAGATGGTGTTTAGA 240 consensus_6240#1 ------------------------------------------------------------ consensus_6240#2 ------------------------------------------------------------ consensus_6240#0 AGCTGTAGGCAACATTTCTTTAGGAAGCTTCCATTTCCCAACTATCCCGAGAGACGTATT 300 consensus_6240#1 ------------------------------------------------------------ consensus_6240#2 ------------------------------------------------------------ consensus_6240#0 TTTCTATTTCTTTCATAAATCACTGTCCATGTTTTTCCTTGCAAATTTTCCCTCCATGCT 360 consensus_6240#1 ------------------------------------------------------------ consensus_6240#2 ------------------------------------------------------------ consensus_6240#0 TTTTAGGATAACATTTTTCGAATTAAATTATCTCTAGCTAGTCTTGCTATTGCCTCAAAC 420 consensus_6240#1 ------------------------------------------------------------ consensus_6240#2 ------------------------------------------------------------ consensus_6240#0 AAACGTGATGATGAGAGAGGAATGCTGATTTTAGGAAGCTTTTTCGCTGCCTACTTGATC 480 consensus_6240#1 ------------------------------------------------------------ consensus_6240#2 ------------------------------------------------------------ consensus_6240#0 GCTGCAACGTTGGCAAGCTTACGGTTTGGGTGGCGTTTAGGGAGGTTTAGGAGCCGCATG 540 consensus_6240#1 ------------------------------------------------------------ consensus_6240#2 ------------------------------------------------------------ consensus_6240#0 GTAGATAGAAACTTCAGTTCCTGCCCTTTCTGGTGTAGTCAACATGGATTTTACGTACAT 600 consensus_6240#1 -----------------CCGAT-TTACTCCTTTTTTATTCAGACTCCAAAAGTATCTTAT 42 consensus_6240#2 ----------GAATTGCCCGAGGTTATTTCTAGTCAATGAACAACGAATACACATTTCAT 50 consensus_6240#0 CACAAGCATAATGTTAAATGAT-TTACTCCTTTTTTATTCAGACTCCAAAAGTATCTTAT 659 ** *** * ** * ** * * * * ** * ** consensus_6240#1 T-----TTTTCTAGTCCAATGAACAACGAATACACATTTCATT----TTCTATTTC---- 89 consensus_6240#2 TTTCTATTTCCCTGTTCTAGAAGCTGTTCAAACGCCCTCTAATGCAGTACTGTAACGAGG 110 consensus_6240#0 T-----TTTTCTAGTCCAATGAACAACGAATACACATTTCATT----TTCTATTTC---- 706 * *** * ** * * * * * ** * * * * * ** * * consensus_6240#1 CCTGTTCTAGAAGCT--GTTTAAACGCCCTCTAATGCAGTACTGTATAAATCTTGCTTAC 147 consensus_6240#2 CGTACAAAACAGGCTTAGATAAAACGCCCTCTAATGCAGTACTGTAAAAATCTTGCTTAC 170 consensus_6240#0 CCTGTTCTAGAAGCT--GTTTAAACGCCCTCTAATGCAGTACTGTATAAATCTTGCTTAC 764 * * * * *** * * ************************* ************* consensus_6240#1 TGATCGTACATACAATACAAACTCTCTCACACACAATCGATTCAAGTCCGGTTCCGACCC 207 consensus_6240#2 TGATCGTACATACAATACAAACTCTCTCACACACAATTGATTCAAGTCCGGTTCCGACCC 230 consensus_6240#0 TGATCGTACATACAATACAAACTCTCTCACACACAATCGATTCAAGTCCGGTTCCGACCC 824 ************************************* ********************** consensus_6240#1 TTTCCGCAAAAC--AAAACAAAA-CAAAAAACACTCTT--AAGGAAAAGCTCGTGTAAAC 262 consensus_6240#2 TTTCCGCAAAACCAAAAACAAAAACAAAAAACACTCTTTAAGGAAAAAGCTCGTGTAAAC 290 consensus_6240#0 TTTCCGCAAAAC--AAAACAAAA-CAAAAAACACTCTT-AAGGAAAAAGCTCGTGTAAAC 880 ************ ********* ************** * * **************** consensus_6240#1 CCA--TCGATGGACGAATCA-ATGA-GAGGTAAC-AGGCAAAGCTGTAA-ATTAG--AAG 314 consensus_6240#2 CCA--TCGATGGACGAATCACATGACGAGGTAAC-AGGCAAAGCTGTAACATTANG-AAG 346 consensus_6240#0 CCNATCNGATGGACGAATCA-ATGA-GAGGTAACCAGGCAAAGCTGTAANATNNAGCAAG 938 ** ************* **** ******** ************** ** *** consensus_6240#1 ACA-A-TCCCCATTTCATGTGC-----GGTAA--TGAGAT----GAACTCGCACGGC--- 358 consensus_6240#2 ACA-AATCCCCATTTCATGTGC-----GGTAAATTGAGAT----GAACTCGCTCGGC--- 393 consensus_6240#0 ACCCATCCCCCATCCTCNATGTTGNCGGGTAAATTGAAGAATTGNAACTCCGCCACCGGG 998 ** * ****** ** ***** *** ***** * * consensus_6240#1 ---TCTTA------TCGTAC-TTCCACAG----TCTTTGTTT--AGCA--TCCTTTTTTT 400 consensus_6240#2 ---TCTTAA-----TCGTACCTTCCACAG----ACTTAGTNT--AGCCATTCCTCTTTTT 439 consensus_6240#0 GCTTCTTAATNCGNTNACNTTTCCCACCAGTTCTTTTTGNTTTAAGCCATTCCTTTTTTT 1058 ***** * * **** ** * * *** **** ***** consensus_6240#1 --CTCTCAAGCTTTGGAGA-AAGGATCAGCACAATCTG-TACGCACT-GTTTTGC--TAC 453 consensus_6240#2 --CTCTCAAGCTTTGGAGACAAGGATCCAGACAATCTGGTACGCACTTGTNATAGCGTAC 497 consensus_6240#0 TTCTCTCNNGCTTTGGAGA-AANGATCAGCACACTCNG-TACGCACT-GTCTTGC--TAC 1113 ***** ********** ** **** *** ** * ******** ** * *** consensus_6240#1 CTG-TACACCTGTTC-AAAGCACCACTTTCTTATAC--ATATATCGG--CAAAATACGA- 506 consensus_6240#2 CTGGTACACCTGTTC-AAAGCACCA-TTTCTTATACCAGTATATCGGGCCAACATACGCA 555 consensus_6240#0 CTG-TACACCTGTNCCAAAGCAACCACTT------------------------------- 1141 *** ********* * ****** * ** consensus_6240#1 -TATAGC-TTTATGTAAGACAACA-CCACTCCCT--GTAGA-ACTGTAA--CAACATCTA 558 consensus_6240#2 TTCTAGCCTTTATGTAAGACANCAACCACTTCCCTGGTAGACACTGTGAACCTACATCTA 615 consensus_6240#0 ------------------------------------------------------------ consensus_6240#1 CATCTTTCTGCCTATTTTTAAAACAATGCAGTCACATAGGGTACATTCTTGAAGAGCAAA 618 consensus_6240#2 CAATCNT-TATCTGGCTT----ATATTACAACCAAATGCCAGTCACCTTAGCGGTACAT- 669 consensus_6240#0 ------------------------------------------------------------ consensus_6240#1 TCGATCAGTGGAGGAATAATACAGTGCTGCAATTATAGGGTGAAGTAACTCTAACTTTAT 678 consensus_6240#2 ------------------------------------------------------------ consensus_6240#0 ------------------------------------------------------------ consensus_6240#1 TTAAAAAATACTTTCTTTCTATAC 702 consensus_6240#2 ------------------------ consensus_6240#0 ------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||