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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6241#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1093 fasta sequence
[TTTTTTTTAAACGTTAATCGTAGAAGCTAATTTTATTGCTTATCGTGTACGTATAGAGT-GTAAGTATAGCTACCTGTTTAAGCGAACATTTTCTTTACCATTGAGCTGTATTTGCTGTCCTCTTGCTGGCGCGTTTGAATGATCTGCGCGTGCAA-G-GAC-ACACTCCTTGCTGCTGGCGTAATCGATCCGCTCGAGTGTGGCGAGCGCTTCGGTAAACCGTTTCACCTTAAACTGTGCCAACGCCTTCCGATATGTTGCCTTCGGGGAGGGATGTTCCTGCTGATCGGTGTANCGAACACGTGCAGCACTTCGTCGAAGCGGTTCTGCTTGATCAGACAGGCAGCAATGTTAAGGTACAGCGTTTCGAGCAGGGACTGCATTTCCTCGATCGTACCGGCTCCTTCGATGGCCGGGTCGAGCTGATCGATCGGTGACCAGGACAGCAAACACTTGGCTGCCTGGTTGAAGTAGGCGTGCGCAAACAACGGGTATTTGGAGAACATTTTCACGCCATTCTCTTTGTACTGTTTGGCCAGCGCGA-CGTTTTCGGGGACGGTGAGTTGGTAGTAATATTTTTGTCCCTCGATGCGCACCAGCTTCATGATGAACGTGACGTCACCGCGTTTGGCACTGCTGATCGTACATTTGCTTTGCTCGTTCGTTAACATTTGCTGCAGCAGAAGCTCCACATAGCAATCGACCGGTGTCAGGGCAGTCCCCATGGTGATCCAAAGTTCTTCGCTGGATCCTCCGCCAAGGTAGGATGACTCGTGCGCTTCAACATTGCTCACGTCGCTTATCGTTACCAGGCAACGGCTCAGCTCGGATGGTTTCTCCATGGAGGTAAAGCGAAATGAAAGCCGTTCCTTCCGCAGCCCCTTGGGTGCGATCCTCGTACAGCGGGGGCACTACACCGTCATCTCCAGCAGATGGTGGCTGCACTGTTGCCGGCTCCGTTTTTAGCGTGTCGGCGAGCGCTTCCTTGCGCACCAGTGGATTGATTTCGTCGTAATCGCTCGACTCGCGGCCCCAGAACCGGCGCACGTAGAAGGGTGGCTTCTTTTCCGACAGTACCGCGTACAGGATGCCCTGA]
[+] EMBL AGA283626 [TTTTTTTTAAACGTTAATCGTAGAAGCTAATTTTATTGCTTATCGTGTACGTATAGAGT GTAAGTATAGCTACCTGTTTAAGCGAACATTTTCTTTACCATTGAGCTGTATTTGCTGTCCTCTTGCTGGCGCGTTTGAATGATCTGCGCGTGCAACGCGAC ACACTCCTTGCTGCTGGCGTAATCGATCCGCTCGAGTGTGGCGAGCGCTTCGGTAAACCGTTTCACCTTAAACTGTGCCAACGCCTTCCGATATGTTGCCTTCGGGGAGGGATGTTCCTGCTGATCGGTGTANCGA ]
[+] EMBL CNS092Q8 [ gtTAATTTTATTGCTTATCGTGTACGTATAGAGTAGTAAGTATAGCTACCTGTTTAAGCGAACATTTTCTTTACCATTGAGCTGTATTTGCTGTCCTCTTGCTGGCGCGTTTGAATGATCTGCGCGTGCAA G AACTACACTCCTTGCTGCTGGCGTAATCGATCCGCTCGAGTGTGGCGAGCGCTTCGGTAAACCGTTTCACCTTAAACTGTGCCAACGCCTTCCGATATGTTGCCTTCGGGGAGGGTTTTTGCTGTTGATCGGTGTAGCGAACACGTGCAGCACTTCGTCGAAGCGGTTCTGCTTGATCAGACAGGCAGCAATGTTAAGGTACAGCGTTTCGAGCAGGGACTGCATTTCCTCGATCGTACCGGCTCCTTCGATGGCCGGGTCGAGCTGATCGATCGGTGACCAGGACAGCAAACACTTGGCTGCCTGGTTGAAGTAGGCGTGCGCAAACAACGGGTATTTGGAGAACATTTTCACGCCATTCTCTTTGTACTGTTTGGCCAGCGCGA CGTTTTCGGGGACGGTGAGTTGGTAGTAATATTTTTGTCCCTCGATGCGCACCAGCTTCATGATGAACGTGACGTCACCGCGTTTGGCACTGCTGATCGTACATTTGCTTTGCTCGTTCGTTAACATTTGCTGCAGCAGAAGCTCCACATAGCAATCGACCGGTGTCAGGGCAGTCCCCATGGTGATCCAAAGTTCTTCGCTGGATCCTCCGCCAAGGTAGGATGACTCGTGCGCTTCAACATTGCTCACGTCGCTTATCGTTACCAGGCAACGGCTCAGCTCGGATGGTTTCTCCATGGAGGTAAAGCGAAATGAAAGCCGTTCCTTCCGCAGCCCCTTGGGTGCGATCCTCGTACAGCGGGGGCACTACACCGTCATCTCC ]
[-] EMBL BX602375 [ GCGCAAACAACGGGTATTTGGAGAACATTTTCACGCCATTCTCTTTGTACTGTTTGGCCAGCGCGAGCG TTTCGGGGACGGTGAGTTGGTAGTAATATTTTTGTCCCTCGATGCGCACCAGCTTCATGATGAACGTGACGTCACCGCGTTTGGCACTGCTGATCCTACATTTGCTTTGCTCGTTCGTTAACATTTGCTGCAGCAGAAGCTCCACATAGCAATCGACCGGTGTCAGGGCAGTCCCCATGGTGATCCAAAGTTCTTCGCTGGATCCTCCGCCAAGGTAGGATGACTCGTGCGCTTCAACATTGCTCACGTCGCTTATCGTTACCAGGCAACGGCTCAGCTCGGATGGTTTCTCCATGGAGGTAAAGCGAAATGAAAGCCGTTCCTTCCGCAGCCCCTT GGTGCGATCCTCGTACAGCGGGGGCACTACACCGTCATCTCCAGCAGATGGTGGCTGCACTGTTGCCGGCTCCGTTTTTAGCGTGTCGGCGAGCGCTTCCTTGCGCACCAGTGGATTGATTTCGTCGTAATCGCTCGACTCGCGGCCCCAGAACCGGCGCACGTAGAAGGGTGGCTTCTTTTCCGACAGTACCGCGTACAGGATGCCCTGA]
consensusID : consensus_6241#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 800 fasta sequence
[TGTTCGGNTTACGNAAGCTACGTGCANCAACTTNGTCTGAANCCGGTTCNTGCTTGATCAGGCATGCCGTCATATGTTAAAGTACNAGCCGTTGTCGAGCAGGGACTGCATTTCCTCGATCGTACNCTGGCACCTTCGATGTCCGGGGTCGTAGCCTGAGACAGATCGGTGACCAGTACAGCGNNACACTTGGNTCCGTCCTGGTTGTAAGTAGGCGTGCGCATAACNTACGGGTATCTTGGAGTATACAATTTTCACGCCATTCTCTNTTGTGACTGTTTGGCACAGCGCGAGCGTTTCGGGGTACGTGTGAGTTGNGTAGTAATATTTTTGTCACCTCGATGCGCACCAGCTTCATGTATGANACTNTGTACGTCACCGCGTTTGGCACTGCTGATCGTACATTTGCTTTGCTCAGTTCGTTAACATTTGCTGCAGCAGATAGCTCCACATAGCAATCGTACCGGTGTCAGGGCAAGTCCCCATGGTGATCCATAAGTTCTTCGCTGGATCACTCCAGCCAAGGTAGGTATGACTCGTGCGCTTCATACATTGCTCACGTCGCTTATCGTTACCAGGCAACGGCTCAGCTCGGTATGGTTTCTCCATGGAGGTAAAGCGTAATATGTATATAGCCGTTCACTTCCGCAGCCCCTTGGTGCAGTATCACTCGTACAGCGGGGGCACTACACCGTCTATCTCCAGCAGATGGTGGCTGCACTGTTGCCGGCTCCGTTTCCATAGCGTGTCGGCGAGCGCTTCCTTGCGCACCCAGTGGATTGATTTAAACTCGGGGGATT]
[-] EMBL AL930048 [TGTTCGGNTTACGNAAGCTACGTGCANCAACTTNGTCTGAANCCGGTTCNTGCTTGATCAGGCATGCCGTCATATGTTAAAGTACNAGCCGTTGTCGAGCAGGGACTGCATTTCCTCGATCGTACNCTGGCACCTTCGATGTCCGGGGTCGTAGCCTGAGACAGATCGGTGACCAGTACAGCGNNACACTTGGNTCCGTCCTGGTTGTAAGTAGGCGTGCGCATAACNTACGGGTATCTTGGAGTATACAATTTTCACGCCATTCTCTNTTGTGACTGTTTGGCACAGCGCGAGCGTTTCGGGGTACGTGTGAGTTGNGTAGTAATATTTTTGTCACCTCGATGCGCACCAGCTTCATGTATGANACTNTGTACGTCACCGCGTTTGGCACTGCTGATCGTACATTTGCTTTGCTCAGTTCGTTAACATTTGCTGCAGCAGATAGCTCCACATAGCAATCGTACCGGTGTCAGGGCAAGTCCCCATGGTGATCCATAAGTTCTTCGCTGGATCACTCCAGCCAAGGTAGGTATGACTCGTGCGCTTCATACATTGCTCACGTCGCTTATCGTTACCAGGCAACGGCTCAGCTCGGTATGGTTTCTCCATGGAGGTAAAGCGTAATATGTATATAGCCGTTCACTTCCGCAGCCCCTTGGTGCAGTATCACTCGTACAGCGGGGGCACTACACCGTCTATCTCCAGCAGATGGTGGCTGCACTGTTGCCGGCTCCGTTTCCATAGCGTGTCGGCGAGCGCTTCCTTGCGCACCCAGTGGATTGATTTAAACTCGGGGGATT]
consensusID : consensus_6241#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 788 fasta sequence
[TTGAACTGTAATTTGGCCTGTCCCTCTTGCTGGCGCGTTTTGAATGATCCTGCGCGTGCAACCGCCGGACACACTCCTTGCTTGCTGGCGTAAATCGATCCGCTCGAGTGCTGCGAGCGCTTCGGTAAACCGTTTCACCGTAAACTGTGCCAACGCCTTCCGATATGTTGCCTTCGGGGAGGGATGTTCCTGCTGATCGGTGTAGCGAAGCACGTGCAGCACTTCGTCGAAGCGGTTCTGCTTGATCAGGCATGCCGCAATGTTAAGGTACAGCGTTTCGAGCAGGGACTGCATTTCCTCGATCGTACCGGCACCTTCGATGGCCGGGTCGAGCTGATCGATCGGTGACCAGGACAGCAAACACTTGACCGCCTGGTTGAAGTAGGCGTGCGCAAACAACGGGTATTTGGAGAACATTTTCACGCCATTCTCTTTGTACTGTTTGGCCAGCGCGAGCGTTTCGGGGACGGTGAGTTGGTAGTAATATTTTTGTCCCTCGATGCGCACCAGCTTCATGATGAACGTGACGTCACCGCGTTTGGCACTGCTGATCGTACATTTGCTTTGCTCGTTCGTTAACATTTGCTGCAGCAGAAGCTCCACATAGCAATCGACCGGTGTCAGGGCAGTCCCCATGGTGATCCAAAGTTCTTCGCTGGATCCTCCGCCAAGGTAGGATGACTCGTGCGCTTCAACATTGCTCACGTCGCTTANCGTTACCAGGCAACGGCTCAGCTCGGATGGTTTCTCCATGGAGGTAAAGCGAAATGAACCTCGTGCGGATCTGC]
[-] EMBL BX467438 [TTGAACTGTAATTTGGCCTGTCCCTCTTGCTGGCGCGTTTTGAATGATCCTGCGCGTGCAACCGCCGGACACACTCCTTGCTTGCTGGCGTAAATCGATCCGCTCGAGTGCTGCGAGCGCTTCGGTAAACCGTTTCACCGTAAACTGTGCCAACGCCTTCCGATATGTTGCCTTCGGGGAGGGATGTTCCTGCTGATCGGTGTAGCGAAGCACGTGCAGCACTTCGTCGAAGCGGTTCTGCTTGATCAGGCATGCCGCAATGTTAAGGTACAGCGTTTCGAGCAGGGACTGCATTTCCTCGATCGTACCGGCACCTTCGATGGCCGGGTCGAGCTGATCGATCGGTGACCAGGACAGCAAACACTTGACCGCCTGGTTGAAGTAGGCGTGCGCAAACAACGGGTATTTGGAGAACATTTTCACGCCATTCTCTTTGTACTGTTTGGCCAGCGCGAGCGTTTCGGGGACGGTGAGTTGGTAGTAATATTTTTGTCCCTCGATGCGCACCAGCTTCATGATGAACGTGACGTCACCGCGTTTGGCACTGCTGATCGTACATTTGCTTTGCTCGTTCGTTAACATTTGCTGCAGCAGAAGCTCCACATAGCAATCGACCGGTGTCAGGGCAGTCCCCATGGTGATCCAAAGTTCTTCGCTGGATCCTCCGCCAAGGTAGGATGACTCGTGCGCTTCAACATTGCTCACGTCGCTTANCGTTACCAGGCAACGGCTCAGCTCGGATGGTTTCTCCATGGAGGTAAAGCGAAATGAACCTCGTGCGGATCTGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6241#0 TTTTTTTTAAACGTTAATCGTAGAAGCTAATTTTATTGCTTATCGTGTACGTATAGAGTG 60
consensus_6241#2 ------------------------------------------------------------
consensus_6241#1 ------------------------------------------------------------
consensus_6241#0 TAAGTATAGCTACCTGTTTAAGCGAACATTTTCTTTACCATTGAGCTGTA-TTTG--CTG 117
consensus_6241#2 ----------------------------------------TTGAACTGTAATTTGGCCTG 20
consensus_6241#1 ------------------------------------------------------------
consensus_6241#0 TCC-TCTTGCTGGCGCGTTT-GAATGATC-TGCGCGTGCAA-----GGACACACTCCTTG 169
consensus_6241#2 TCCCTCTTGCTGGCGCGTTTTGAATGATCCTGCGCGTGCAACCGCCGGACACACTCCTTG 80
consensus_6241#1 ------------------------------------------------------------
consensus_6241#0 CT-GCTGGCGTAA-TCGATCCGCTCGAGTGTGGCGAGCGCTTCGGTAAACCGTTTCACCT 227
consensus_6241#2 CTTGCTGGCGTAAATCGATCCGCTCGAGTGCTGCGAGCGCTTCGGTAAACCGTTTCACCG 140
consensus_6241#1 ------------------------------------------------------------
consensus_6241#0 TAAACTGTGCCAACGCCTTCCGATATGTTGCCTTCGGGGAGGGATGTTCCTGCTGATCGG 287
consensus_6241#2 TAAACTGTGCCAACGCCTTCCGATATGTTGCCTTCGGGGAGGGATGTTCCTGCTGATCGG 200
consensus_6241#1 -----------------------------------------------------TGTTCGG 7
** ****
consensus_6241#0 TGTANCGAA-C-ACGTGCAGCA-CTTCGTC--GAAGCGGTTCT-GCTTGATCAGACAGGC 341
consensus_6241#2 TGTAGCGAAGC-ACGTGCAGCA-CTTCGTC--GAAGCGGTTCT-GCTTGATCAGGCATGC 255
consensus_6241#1 NTTACGNAAGCTACGTGCANCAACTTNGTCTGAANCCGGTTCNTGCTTGATCAGGCATGC 67
** ** * ******* ** *** *** * ****** ********** ** **
consensus_6241#0 AGCAAT--GTTAAGGTACAG--CGTT-TCGAGCAGGGACTGCATTTCCTCGATCGTACC- 395
consensus_6241#2 CGCAAT--GTTAAGGTACAG--CGTT-TCGAGCAGGGACTGCATTTCCTCGATCGTACC- 309
consensus_6241#1 CGTCATATGTTAAAGTACNAGCCGTTGTCGAGCAGGGACTGCATTTCCTCGATCGTACNC 127
* ** ***** **** **** *******************************
consensus_6241#0 -GGCTCCTTCGATGGCCGGG-TCG-AGCT---GATCGATCGGTGACCAGGACAGC-AAAC 448
consensus_6241#2 -GGCACCTTCGATGGCCGGG-TCG-AGCT---GATCGATCGGTGACCAGGACAGC-AAAC 362
consensus_6241#1 TGGCACCTTCGATGTCCGGGGTCGTAGCCTGAGACAGATCGGTGACCAGTACAGCGNNAC 187
*** ********* ***** *** *** ** ************* ***** **
consensus_6241#0 ACTTGGCTGC---CTGGTTG-AAGTAGGCGTGCGCA-AACA-ACGGGTAT-TTGGAGAAC 501
consensus_6241#2 ACTTGACCGC---CTGGTTG-AAGTAGGCGTGCGCA-AACA-ACGGGTAT-TTGGAGAAC 415
consensus_6241#1 ACTTGGNTCCGTCCTGGTTGTAAGTAGGCGTGCGCATAACNTACGGGTATCTTGGAGTAT 247
***** * ******* *************** *** ******** ****** *
consensus_6241#0 A---TTTTCACGCCATTCTCTTT-GT-ACTGTTTGGC-CAGCGCGACGTTTTCGGGG-AC 554
consensus_6241#2 A---TTTTCACGCCATTCTCTTT-GT-ACTGTTTGGC-CAGCGCGAGCGTTTCGGGG-AC 468
consensus_6241#1 ACAATTTTCACGCCATTCTCTNTTGTGACTGTTTGGCACAGCGCGAGCGTTTCGGGGTAC 307
* ***************** * ** ********** ******** ******** **
consensus_6241#0 G-GTGAGTTGG-TAGTAATATTTTTGTC-CCTCGATGCGCACCAGCTTCATG-ATGAACG 610
consensus_6241#2 G-GTGAGTTGG-TAGTAATATTTTTGTC-CCTCGATGCGCACCAGCTTCATG-ATGAACG 524
consensus_6241#1 GTGTGAGTTGNGTAGTAATATTTTTGTCACCTCGATGCGCACCAGCTTCATGTATGANAC 367
* ******** **************** *********************** ****
consensus_6241#0 TG---ACGTCACCGCGTTTGGCACTGCTGATCGTACATTTGCTTTGCTC-GTTCGTTAAC 666
consensus_6241#2 TG---ACGTCACCGCGTTTGGCACTGCTGATCGTACATTTGCTTTGCTC-GTTCGTTAAC 580
consensus_6241#1 TNTGTACGTCACCGCGTTTGGCACTGCTGATCGTACATTTGCTTTGCTCAGTTCGTTAAC 427
* ******************************************** **********
consensus_6241#0 ATTTGCTGCAGCAGA-AGCTCCACATAGCAATCG-ACCGGTGTCAGGGCA-GTCCCCATG 723
consensus_6241#2 ATTTGCTGCAGCAGA-AGCTCCACATAGCAATCG-ACCGGTGTCAGGGCA-GTCCCCATG 637
consensus_6241#1 ATTTGCTGCAGCAGATAGCTCCACATAGCAATCGTACCGGTGTCAGGGCAAGTCCCCATG 487
*************** ****************** *************** *********
consensus_6241#0 GTGATCCA-AAGTTCTTCGCTGGATC-CTCC-GCCAAGGTAGG-ATGACTCGTGCGCTTC 779
consensus_6241#2 GTGATCCA-AAGTTCTTCGCTGGATC-CTCC-GCCAAGGTAGG-ATGACTCGTGCGCTTC 693
consensus_6241#1 GTGATCCATAAGTTCTTCGCTGGATCACTCCAGCCAAGGTAGGTATGACTCGTGCGCTTC 547
******** ***************** **** *********** ****************
consensus_6241#0 A-ACATTGCTCACGTCGCTTATCGTTACCAGGCAACGGCTCAGCTCGG-ATGGTTTCTCC 837
consensus_6241#2 A-ACATTGCTCACGTCGCTTANCGTTACCAGGCAACGGCTCAGCTCGG-ATGGTTTCTCC 751
consensus_6241#1 ATACATTGCTCACGTCGCTTATCGTTACCAGGCAACGGCTCAGCTCGGTATGGTTTCTCC 607
* ******************* ************************** ***********
consensus_6241#0 ATGGAGGTAAAGCGAAATGAAAGC-----CGTTCCT-TCCGCAGCCCCTTGGGTGCGATC 891
consensus_6241#2 ATGGAGGTAAAGCGAAATGAACCT-----CGTGCGGATCTGC------------------ 788
consensus_6241#1 ATGGAGGTAAAGCGTAATATGTATATAGCCGTTCACTTCCGCAGCCCCTTGGTGCAGTAT 667
************** *** *** * ** **
consensus_6241#0 CTCGTACAGCGGGGGCACTACACCGTCATCTCCAGCAGATGGTGGCTGCACTGTTGCCGG 951
consensus_6241#2 ------------------------------------------------------------
consensus_6241#1 CACTCGTACAGCGGGGGCACTACACCGTCTATCTCCAGCAGATGGTGGCTGCACTGTTGC 727
consensus_6241#0 CTCCGTTTTTAGCGTGTCGGCGAGCGCTTCCTTGCGCACCAGTGGATTGATTTCGTCGTA 1011
consensus_6241#2 ------------------------------------------------------------
consensus_6241#1 CGGCTCCGTTTCCATAGCGTGTCGGCGAGCGCTTCCTTGCGCACCCAGTGGATTGATTTA 787
consensus_6241#0 ATCGCTCGACTCGCGGCCCCAGAACCGGCGCACGTAGAAGGGTGGCTTCTTTTCCGACAG 1071
consensus_6241#2 ------------------------------------------------------------
consensus_6241#1 AACTCGGGGGATT----------------------------------------------- 800
consensus_6241#0 TACCGCGTACAGGATGCCCTGA 1093
consensus_6241#2 ----------------------
consensus_6241#1 ----------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||