These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6244#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1154 fasta sequence [CCGGCATTGCGCGCAACCGACCAAGCCAAAGTGACCGAATCTAAAGTGGCCTCAGCCCTGCCTGGACAGTGATGTACCGAAAGTGATTCCGCAGTGAGTGCAGCATAAACACTACACCCCAACGGGGGCAAAGGACGGACAGCATCATCGGCGAGGTCATCATCACGCTACTAGCGGACGTCGTCCGTACCCATCATAATCATATATACTCGCTCGTACCTCGTACCGCTGGCTCAACAAACCGCGCCCGATCAATTGTGTCAAATTGTTTCTATTTTGAGGTGTATATTATTTTTAAAACTCCCCCTCGCTCGCCCTCGCCCTCGCTCGCCCTCGCCCTCGCTCGCCCTCGCCCTCGCTCGCCCTAGTCCTCTTGCGTGAGGGTTTGGGGCACGGATTAAGCGGAATTGCAGTCGGAATCCGGTACGGGGCTGGTGCAGTCGAGCGTGAGGCGTGCGAGCTAGTGCGAACGTACGAGAACCGAGTGTCATGTGGTATGGTACGGTTGTGCTGTTCCTGTTGTGGGTGCTGGCCGAATCCGGTTCCGGTGTGGGCGGCCTGACGCAGCTGCGCTTCCCGTACAGCACCACCAACTTCAGCCTCAGCCTGTACAAGGCGGCGTTCAAGCCGGAGCAGAACGTGGTCGTCGCACCGTTCACCCTGCAGAACAGCGTAGCGATGCTGTACTCGATCGCAACCGGGACAACACGTGACCGGTTGCGGGAGGTGTTCGGTCTGCCGGCCAACTTTACCGAGTTCATCATCAACCAGAAGCTGCTGCACTACACGCTCAGCGATGCCGGCGGTTCGGAGGGCTTTCGCATGAAGAACCGCATCATCGTGAACGGATTCCGCGAGGTGGATGCCCGCATGCGGGACATCATGCACGAGGACCTGGACACGGTGCTGATGTACTTCGATTTCGCCCAGCGCGAAGGCGTCGTGCGACGGGCCAACCACTTCCTTAGCATGCGCACGAACGGCCTCATCCGGGACACGCTCTTCCTCGGCGATGTGCCGAAGCAGCTGCAGATGATACAGCTGAGTGCCGGCTCG-TTCCGGCCACCGTTTGCGAGCGGGTTCGATGCGCGGGACACGATCGCACGCGACTTTCGGACCGGCTGGATCGACAAGCTCTACCAAACGACGACCAT] [+] EMBL BM633417 [CCGGCATTGCGCGCAACCGACCAAGCCAAAGTGACCGAATCTAAAGTGGCCTCAGCCCTGCCTGGACAGTGATGTACCGAAAGTGATTCCGCAGTGAGTGCAGCATAAACACTACACCCCAACGGGGGCAAAGGACGGACAGCATCATCGGCGAGGTCATCATCACGCTACTAGCGGACGTCGTCCGTACCCATCATAATCATATATACTCGCTCGTACCTCGTACCGCTGGCTCAACAAACCGCGCCCGATCAATTGTGTCAAATTGTTTCTATTTTGAGGTGTATATTATTTTTAAAACTCCCCCTCGCTCGCCCTCGCCCTCGCTCGCCCTCGCCCTCGCTCGCCCTCGCCCTCGCTCGCCCTAGTCCTCTTGCGTGAGGGTTTGGGGCACGGATTAAGCGGAATTGCAGTCGGAATCCGGTACGGGGCTGGTGCAGTCGAGCGTGAGGCGTGCGAGCTAGTGCGAACGTACGAGAACCGAGTGACATGTGGTATGGTACGGTTGTGCTGTTCCTGTTGTGGGTTCTGGCCGAATCCGGTTCCGGTGTGGGCGGCCTGACGCAGCTGCGCTTCCCGTACAGCACCACCAACTTCAGCCTCAGCCTGTACAAGGCGGCGTTCAAGCCGGAGCAGAACGTGGTCGTCGCACCGTTCACCCTGCAGAACAG ] [+] EMBL BX626181 [ ACGGGGCTGGTGCNGTCGAGCGTGAGGCGTGCGAGCTAGTGCGAACGTACGAGAACCGAGTGTCATGTGGTATGGTACGGTTGTGCTGTTCCTGTTGTGGGTGCTGGCCGAATCCGGTTCCGGTGTGGGCGGCCTGACGCAGCTGCGCTTCCCGTACAGCACCACCAACTTCAGCCTCAGCCTGTACAAGGCGGCGTTCAAGCCGGAGCAGAACGTGGTCGTCGCACCGTTCACCCTGCAGAACAGCGTAGCGATGCTGTACTCGATCGCAACCGGGACAACACGTGACCGGTTGCGGGAGGTGTTCGGTCTGCCGGCCAACTTTACCGAGTTCATCATCAACCAGAAGCTGCTGCACTACACGCTCAGCGATGCCGGCGGTTCGGAGGGCTTTCGCATGAAGAACCGCATCATCGTGAACGGATTCCGCGAGGTGGATGCCCGCATGCGGGACATCATGCACGAGGACCTGGACACGGTGCTGATGTACTTCGATTTCGCCCAGCGCGAAGGCGTCGTGCGACGGGCCAACCACTTCCTTAGCATGCGCACGAACGGCCTCATCCGGGACACGCTCTTCCTCGGCGATGTGCCGAAGCAGCTGCAGATGATACAGCTGAGTGCCNGCTCG TTCCGGCCACCGTTTGCGAGCGGGTTCGATGCGCGGGACACGATCGCACGCGACTTTCGGACCGGCTGGATCGACAAGCTCTACCAAACGACGACCAT] [+] EMBL BM591917 [ ccGGGCTGGTGCAGTCGAGCGTGAGGCGTGCGAGCTAGTGCGAACGTACGAGAACCGAGTGTCATGTGGTATGGTACGGTTGTGCTGTTCCTGTTGTGGGTGCTGGCCGAATCCGGTTCCGGTGTGGGCGGCCTGACGCAGCTGCGCTTCCCGTACAGCACCACCAACTTCAGCCTCAGCCTGTACAAGGCGGCGTTCAAGCCGGAGCAGAACGTGGTCGTCGCACCGTTCACCCTGCAGAACAGCGTAGCGATGCTGTACTCGATCGCAACCGGGACAACACGTGACCGGTTGCGGGAGGTGTTCGGTCTGCCGGCCAACTTTACCGAGTTCATCATCAACCAGAAGCTGCTGCACTACACGCTCAGCGATGCCGGCGGTTCGGAGGGCTTTCGCATGAAGAACCGCATCATCGTGAACGGATTCCGCGAGGTGGATGCCCGCATGCGGGACATCATGCACGAGGACCTGGACACGGTGCTGATGTACTTCGATTTCGCCCAGCGCGAAGGCGTCGTGCGACGGGCCAACCACTTCCTTAGCATGCGCACGAACGGCCTCATCCGGGACACGCTCTTCCTCGGCGATGTGCCAAAGCAGCTGCAGATGATACAGCTGAGTGCCGGCTCGTTTCCGGCCACCGTTTtgc ] [+] EMBL BM606357 [ ccgGTGCGAGCTAGTGCGAACGTACGAGAACCGAGTGTCATGTGGTATGGTACGGTTGTGCTGTTCCTGTTGTGGGTGCTGGCCGAATCCGGTTCCGGTGTGGGCGGCCTGACGCAGCTGCGCTTCCCGTACAGCACCACCAACTTCAGCCTCAGCCTGTACAAGGCGGCGTTCAAGCCGGAGCAGAACGTGGTCGTCGCACCGTTCACCCTGCAGAACAGCATAGCGATGCTGTACTCGATCGCAACCGGGACAACACGTGACCGGTTGCGGGAGGTGTTCGGTCTGCCGGCCAACTTTACCGAGTTCATCATCAACCAGAAGCTGCTGCACTACACGCTCAGCGATGCCGGCGGTTCGGAGGGCTTTCGCATGAAGAACCGCATCATCGTGAACGGATTCCGCGAGGTGGATGCCCGCATGCGGGACATCATGCACGAGGACCTGGACACGGTGCTGATGTACTTCGATTTCGCCCAGCGCGAAGGCGTCGTGCGACGGGCCAACCACTTCCTTAGCATGCGCACGAACGGCCTAATCCGGGACACGCTCTTCCTCGGCGATGTGCCGAAGCAGCTGCAGATGATACAGCTGAGTGCCGGCTCG TTCCGGCCACCGTTTGCGAGCGGGTTCGATGCGCGGGACACGATCGCGCGCGACTTTCGGA ] consensusID : consensus_6244#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 499 fasta sequence [ATGCTCAGGCAGAATCGCCNGAGGTTAACTAGTGCGAACGTACGAGAACCGAGTGACATGTGGTATGGTACGGTTGTGCTGTTCCTGTTGTGGGTTCTGGCCGAATCCGGTTCCGGTGTGGGCGGCCTGACGCAGCTGCGCTTCCCGTACAGCACCACAATTCAGCTCAGCTGTACAAGGCGGCGTTCAAGCCGGAGCAGAAACGTGGTCGTCGCACCGTTCACCCTGCAGAAACAGCATAGCGATGCTGTACTCGATCGGCAACCGGGACAACACGTGACCGGTTGCGGGAGGTGTTCGGTCTGCCGGCCAACTTTACCGANGTTCATCATCAACCCANAAGGCTGCTGCACTTACACCGCTCAGCGATGCCGGCGGGTTTCGGAAGGGGCTTCTCGGCNCATGAAGAACCGGCATCATCCGGTGAACCGGGATTCCCCGCGGAGGTTGGAATTGCCCGCAATTGCGGGGACCATTCACTTGCACGGANGGGACCCTG] [+] EMBL AL696561 [ATGCTCAGGCAGAATCGCCNGAGGTTAACTAGTGCGAACGTACGAGAACCGAGTGACATGTGGTATGGTACGGTTGTGCTGTTCCTGTTGTGGGTTCTGGCCGAATCCGGTTCCGGTGTGGGCGGCCTGACGCAGCTGCGCTTCCCGTACAGCACCACAATTCAGCTCAGCTGTACAAGGCGGCGTTCAAGCCGGAGCAGAAACGTGGTCGTCGCACCGTTCACCCTGCAGAAACAGCATAGCGATGCTGTACTCGATCGGCAACCGGGACAACACGTGACCGGTTGCGGGAGGTGTTCGGTCTGCCGGCCAACTTTACCGANGTTCATCATCAACCCANAAGGCTGCTGCACTTACACCGCTCAGCGATGCCGGCGGGTTTCGGAAGGGGCTTCTCGGCNCATGAAGAACCGGCATCATCCGGTGAACCGGGATTCCCCGCGGAGGTTGGAATTGCCCGCAATTGCGGGGACCATTCACTTGCACGGANGGGACCCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6244#0 CCGGCATTGCGCGCAACCGACCAAGCCAAAGTGACCGAATCTAAAGTGGCCTCAGCCCTG 60 consensus_6244#1 ------------------------------------------------------------ consensus_6244#0 CCTGGACAGTGATGTACCGAAAGTGATTCCGCAGTGAGTGCAGCATAAACACTACACCCC 120 consensus_6244#1 ------------------------------------------------------------ consensus_6244#0 AACGGGGGCAAAGGACGGACAGCATCATCGGCGAGGTCATCATCACGCTACTAGCGGACG 180 consensus_6244#1 ------------------------------------------------------------ consensus_6244#0 TCGTCCGTACCCATCATAATCATATATACTCGCTCGTACCTCGTACCGCTGGCTCAACAA 240 consensus_6244#1 ------------------------------------------------------------ consensus_6244#0 ACCGCGCCCGATCAATTGTGTCAAATTGTTTCTATTTTGAGGTGTATATTATTTTTAAAA 300 consensus_6244#1 ------------------------------------------------------------ consensus_6244#0 CTCCCCCTCGCTCGCCCTCGCCCTCGCTCGCCCTCGCCCTCGCTCGCCCTCGCCCTCGCT 360 consensus_6244#1 ------------------------------------------------------------ consensus_6244#0 CGCCCTAGTCCTCTTGCGTGAGGGTTTGGGGCACGGATTAAGCGGAATTGCAGTCGGAAT 420 consensus_6244#1 ------------------------------------------------------------ consensus_6244#0 CCGGTACGGGGCTGGTGCAGTCGAGCGTGAGGCGTGCGAGCTAGTGCGAACGTACGAGAA 480 consensus_6244#1 --------ATGCTCAGGCAGAATCGCCNGAGGTT----AACTAGTGCGAACGTACGAGAA 48 *** **** ** **** * ******************** consensus_6244#0 CCGAGTGTCATGTGGTATGGTACGGTTGTGCTGTTCCTGTTGTGGGTGCTGGCCGAATCC 540 consensus_6244#1 CCGAGTGACATGTGGTATGGTACGGTTGTGCTGTTCCTGTTGTGGGTTCTGGCCGAATCC 108 ******* *************************************** ************ consensus_6244#0 GGTTCCGGTGTGGGCGGCCTGACGCAGCTGCGCTTCCCGTACAGCACCACCAACTTCAGC 600 consensus_6244#1 GGTTCCGGTGTGGGCGGCCTGACGCAGCTGCGCTTCCCGTACAGCACCACAA--TTCAGC 166 ************************************************** * ****** consensus_6244#0 CTCAGCCTGTACAAGGCGGCGTTCAAGCCGGAGCAGAA-CGTGGTCGTCGCACCGTTCAC 659 consensus_6244#1 -TCAGC-TGTACAAGGCGGCGTTCAAGCCGGAGCAGAAACGTGGTCGTCGCACCGTTCAC 224 ***** ******************************* ********************* consensus_6244#0 CCTGCAGAA-CAGCGTAGCGATGCTGTACTCGATCG-CAACCGGGACAACACGTGACCGG 717 consensus_6244#1 CCTGCAGAAACAGCATAGCGATGCTGTACTCGATCGGCAACCGGGACAACACGTGACCGG 284 ********* **** ********************* *********************** consensus_6244#0 TTGCGGGAGGTGTTCGGTCTGCCGGCCAACTTTACCGAG-TTCATCATCAACC--AGAAG 774 consensus_6244#1 TTGCGGGAGGTGTTCGGTCTGCCGGCCAACTTTACCGANGTTCATCATCAACCCANAAGG 344 ************************************** ************* * * consensus_6244#0 CTGCTGCACT-ACAC-GCTCAGCGATGCCGGCGG--TTCGGA--GGGCTTT----CGCAT 824 consensus_6244#1 CTGCTGCACTTACACCGCTCAGCGATGCCGGCGGGTTTCGGAAGGGGCTTCTCGGCNCAT 404 ********** **** ****************** ****** ****** * *** consensus_6244#0 GAAGAACCG-CATCATC--GTGAAC--GGATTCCGCGAGG----TGGA--TGCCCGCA-- 871 consensus_6244#1 GAAGAACCGGCATCATCCGGTGAACCGGGATTCCCCGCGGAGGTTGGAATTGCCCGCAAT 464 ********* ******* ****** ******* ** ** **** ******** consensus_6244#0 TGCGGGACATCATGCACGAGGACCTGGACACGGTGCTGATGTACTTCGATTTCGCCCAGC 931 consensus_6244#1 TGCGGGG-ACCATTCACTTGCAC--GGANGGGACCCTG---------------------- 499 ****** * *** *** * ** *** * *** consensus_6244#0 GCGAAGGCGTCGTGCGACGGGCCAACCACTTCCTTAGCATGCGCACGAACGGCCTCATCC 991 consensus_6244#1 ------------------------------------------------------------ consensus_6244#0 GGGACACGCTCTTCCTCGGCGATGTGCCGAAGCAGCTGCAGATGATACAGCTGAGTGCCG 1051 consensus_6244#1 ------------------------------------------------------------ consensus_6244#0 GCTCGTTCCGGCCACCGTTTGCGAGCGGGTTCGATGCGCGGGACACGATCGCACGCGACT 1111 consensus_6244#1 ------------------------------------------------------------ consensus_6244#0 TTCGGACCGGCTGGATCGACAAGCTCTACCAAACGACGACCAT 1154 consensus_6244#1 ------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||