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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6245#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1252 fasta sequence
[AGGATAACCACATTTGCTCGACGATTCGCACCCATGCATACACACACACGCGCACTACCACAGGCGAACAGGCGAAGGAAGGCGAGGCACAGGCCCGCAAACGTGTCAATATACAAACTTGAATTTAGAAGTGAATCCGTGAGCAAATTACAACTTGAAATCAAATTATACATACCTTCAGAACGTTTACATACACAAATCTAGCAGCATTACAAGGGAAAAGCGAAAAGCGCCCATAACGATAATTGGGGTGAATGACGCCGCAATACTCCTCGCGTTTACGCAAGCGCGGCTGAACAAAGACAGAGTACTAACCGAGACGGCCGGGAGAAAGGGAGAGCGAAAAAAGAAAAACCACGAGGACAATATTTAGTATTTTCAGTGCAGATTAATACTGCATTTGTTGCGTAATGTGTAACAATAAAGGGAAAAAGGCCTGGAATGAGGCAACGGGGAGGGGGATGGTGGGTACTAGAATGGCGCAACGCGAGGCTTGGCTTGCCGAATGGGCTACTACACCCTGGTAGAGCGTGTATTTTGAATGGCGATCGTGTAGTTATGTACGTTTAAAATATCGATCATCAACCATAACGAGTTCACACACACACACACACGCGCATGCATGCATACATTAGCTAACGTTTACATTGTACGGTTTACCCACTTACTGCTGCAGCCTGCGGGGAATGCAACACCTCTCTAACTACTATATAGTAGGCTGGATGGAGGCTGGTAGTGCAGAAATTACTGTGCTGTCTCTTTTGCGGAACGTTTTTAATGTGTAACTTAACTAGTAGCCTTTGGTTTTAACTTCCTTTCCTTAGTTGAGTTTTAGCACGTGCGTGCGCGTTTCGGGNAGATGATCGAAACGCGACACATTACAATTTCGAATTCGCGCCATTCTATCGTTCTTTTTTTACGAACACTCCCTCCTATGTTTTCTTTTGTTTTAGTGCAAATTCTTTCGTTTAATTTATTTCATTGTGAATCGAAAAGCTTCTAAAATAATCTTTATTTATGTGTAGCAGTCAAAATATGTGCCGCGCATGACGAGAGGAAGAGAGAGAGAGAGAAAGGGATTATACTAATTGTGTATCAAAAGGGGCACGATTTAACTGCAACTGTAAGTACACAAATCTGCATTTCGGACACACTGATGGGTTTCTTTTCAACTTCAGTGAGTAAAAGAGGGCTCAGTGATTAGAATGCAAGGAGAGCAGACAGGAAGGAGTGAATTAACGGTCTGAGTGGT]
[+] EMBL BX626158 [AGGATAACCACATTTGCTCGACGATTCGCACCCATGCATACACACACACGCGCACTACCACAGGCGAACAGGCGAAGGAAGGCGAGGCACAGGCCCGCAAACGTGTCAATATACAAACTTGAATTTAGAAGTGAATCCGTGAGCAAATTACAACTTGAAATCAAATTATACATACCTTCAGAACGTTTACATACACAAATCTAGCAGCATTACAAGGGAAAAGCGAAAAGCGCCCATAACGATAATTGGGGTGAATGACGCCGCAATACTCCTCGCGTTTACGCAAGCGCGGCTGAACAAAGACAGAGTACTAACCGAGACGGCCGGGAGAAAGGGAGAGCGAAAAAAGAAAAACCACGAGGACAATATTTAGTATTTTCAGTGCAGATTAATACTGCATTTGTTGCGTAATGTGTAACAATAAAGGGAAAAAGGCCTGGAATGAGGCAACGGGGAGGGGGATGGTGGGTACTAGAATGGCGCAACGCGAGGCTTGGCTTGCCGAATGGGCTACTACACCCTGGTAGAGCGTGTATTTTGAATGGCGATCGTGTAGTTATGTACGTTTAAAATATCGATCATCAACCATAACGAGTTCACACACACACACACACGCGCATGCATGCATACATTAGCTAACGTTTACATTGTACGGGTTACCCACTTACTGCTGCAGCCTGCGGGGAATGCAACACCT ]
[+] EMBL BM628958 [ ccgGCGAAAAGCGCCCATAACGATAATTGGGGTGAATGACGCCGCAATACTCCTCGCGTTTACGCAAGCGCGGCTGAACAAAGACAGAGTACTAACCGAGACGGCCGGGAGAAAGGGAGAGCGAAAAAAGAAAAACCACGAGGACAATATTTAGTATTTTCAGTGCAGATTAATACTGCATTTGTTGCGTAATGTGTAACAATAAAGGGAAAAAGGCCTGGAATGAGGCAACGGGGAGGGGGATGGTGGGTACTAGAATGGCGCAACGCGAGGCTTGGCTTGCCGAATGGGCTACTACACCCTGGTAGAGCGTGTATTTTGAATGGCGATCGTGTAGTTATGTACGTTTAAAATATCGATCATCAACCATAACGAGTTCACACACACACACACACGCGCATGCATGCATACATTAGCTAACGTTTACATTGTACGGTTTACCCACTTACTGCTGCAGCCTGC ]
[+] EMBL BX625121 [ AAGGCCTGGAATGAGGCAACGGGGAGGGGGATGGTGGGTACTAGAATGGCGCAACGCGAGGCTTGGCTTGCCGAATGGGCTACTACACCCTGGTAGAGCGTGTATTTTGAATGGCGATCGTGTAGTTATGTACGTTTAAAATATCGATCATCAACCATAACGAGTTCACACACACACACACACGCGCATGCATGCATACATTAGCTAACGTTTACATTGTACGGTTTACCCACTTACTGCTGCAGCCTGCGGGGAATGCAACACCTCTCTAACTACTATATAGTAGGCTGGATGGAGGCTGGTAGTGCAGAAATTACTGTGCTGTCTCTTTTGCGGAACGTTTTTAATGTGTAACTTAACTAGTAGCCTTTGGTTTTAACTTCCTTTCCTTAGTTGAGTTTTAGCACGTGCGTGCGCGTTTCGGGNAGATGATCGAAACGCGACACATTACAATTTCGAATTCGCGCCATTCTATCGTTCTTTTTTTACGAACACTCCCTCCTATGTTTTCTTTTGTTTTAGTGCAAATTCTTTCGTTTAATTTATTTCATTGTGAATCGAAAAGCTTCTAAAATAATCTTTATTTATGTGTAGCAGTCAAAATATGTGCCGCGCATGACGAGAGGAAGAGAGAGAGAGAGAAAGGGATTATACTAATTGTGTATCAAAAGGGGCACGATTTAACTGCAACTGTAAGTACACAAATCTGCATTTCGGACACACTGATGGGTTTCTTTTCAACTTCAGTGAGTAAAAGAGGGCTCAGTGATTAGAATGCAAGGAGAGCAGACAGGAAGGAGTGAATTAACGGTCTGAGTGGT]
consensusID : consensus_6245#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 681 fasta sequence
[GACCCACGCGTCCGCGCGAGGCTTGGCTTGCCGAATGGGCTACTACACCCTGGTAGAGCGTGTATTTTGAATGGCGATCGTGTAGTTATGTACGTTTAAAATATCGATCATCAACCATAACGAGTTCACACACACACACACACGCGCATGCATGCATACATTAGCTAACGTTTACATTGTACGGTTTACCCACTTACTGCTGCAGCCTGCGGGGAATGCAACACCTCTCTAACTACTATATAGTAGGCTGGATGGAGGCTGGTAGTGCAGAAATTACTGTGCTGTCTCTTTTGCGGAACGGTTTTTAATGTGTAACTTAACTAGTAGCCTTTGGTTTTAACTTCCTTTCCTTAGTTGAGTTTTAGCACGTGCGTGCGCGTTTCGGGTAGATGATCGAAACGCGACACATTACAATTTCGAATTCGCGCCATTCTATCGTTCTTTTTTTACGAACACTCCCTCCTATGTTTTCTTTTGTTTTAGTGCAAATTCTTTCGTTTAATTTATTTCATTGTGAATCGAAAAGCTTCTAAAATAATCTTTATTTATGTGTAGCAGTCAAAATATGTGCCGCGCATGACGAGAGGAAGAGAGAGAGAGAGAAAGGGATTATACTAATTGTGTATCAAAAGGGGCACGATTTAACTGCAACTGTAAGTACACAAATCTGCATTTCGGACA]
[+] EMBL BM591883 [GACCCACGCGTCCGCGCGAGGCTTGGCTTGCCGAATGGGCTACTACACCCTGGTAGAGCGTGTATTTTGAATGGCGATCGTGTAGTTATGTACGTTTAAAATATCGATCATCAACCATAACGAGTTCACACACACACACACACGCGCATGCATGCATACATTAGCTAACGTTTACATTGTACGGTTTACCCACTTACTGCTGCAGCCTGCGGGGAATGCAACACCTCTCTAACTACTATATAGTAGGCTGGATGGAGGCTGGTAGTGCAGAAATTACTGTGCTGTCTCTTTTGCGGAACGGTTTTTAATGTGTAACTTAACTAGTAGCCTTTGGTTTTAACTTCCTTTCCTTAGTTGAGTTTTAGCACGTGCGTGCGCGTTTCGGGTAGATGATCGAAACGCGACACATTACAATTTCGAATTCGCGCCATTCTATCGTTCTTTTTTTACGAACACTCCCTCCTATGTTTTCTTTTGTTTTAGTGCAAATTCTTTCGTTTAATTTATTTCATTGTGAATCGAAAAGCTTCTAAAATAATCTTTATTTATGTGTAGCAGTCAAAATATGTGCCGCGCATGACGAGAGGAAGAGAGAGAGAGAGAAAGGGATTATACTAATTGTGTATCAAAAGGGGCACGATTTAACTGCAACTGTAAGTACACAAATCTGCATTTCGGACA]
consensusID : consensus_6245#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 618 fasta sequence
[AGCCAGAATCGNCACGAGGGGAATGAGGCAACGGGGAGGGGGATGGTGGGTACTAGAATGGCGCAACGCGAGGCTTGGCTTGCCGAATGGGCTACTACACCCTGGTAGAGCGTGTATTTTGAATGGCGATCGTGTAGTTATGTACGTTTAAAATATCGATCATCAACCATAACGAGTTCACACACACACACACACACGCGCATGCATGCATACATTAGCTAACGTTTACATTGTACGGTTTACCCACTTACTGCTGCAGCCTGCGGGGAATGCAACACCTCTCTAACTACTATATAGTAGGCTGGATGGAGGCTGGTAGTGCAGAAATTACTGTGCTGTCTCTTTTGCGGAACGGTTTTTAATGTGTAACTTAACTAGTAGCCTTTGGTTTTAACTTCCTTTCCTTAGTTGAGTTTTAGCACGTGCGTGCGCGTTTCGGGTAGATGTTCGAAACGCGACACATTACAATTTCGAATTCGCGCCATTCTTTCTTTCATTTTTTACGAACACTCCCTCCTGTTTTTATTTTCTTTCAGTTTAGNTGCAAATTCTTTCGTTTAACTTTATTTCATTGTGTATCGAAAAGCTTCTAACAATAAATCTTTATNTTATCGTCGT]
[+] EMBL BX467389 [AGCCAGAATCGNCACGAGGGGAATGAGGCAACGGGGAGGGGGATGGTGGGTACTAGAATGGCGCAACGCGAGGCTTGGCTTGCCGAATGGGCTACTACACCCTGGTAGAGCGTGTATTTTGAATGGCGATCGTGTAGTTATGTACGTTTAAAATATCGATCATCAACCATAACGAGTTCACACACACACACACACACGCGCATGCATGCATACATTAGCTAACGTTTACATTGTACGGTTTACCCACTTACTGCTGCAGCCTGCGGGGAATGCAACACCTCTCTAACTACTATATAGTAGGCTGGATGGAGGCTGGTAGTGCAGAAATTACTGTGCTGTCTCTTTTGCGGAACGGTTTTTAATGTGTAACTTAACTAGTAGCCTTTGGTTTTAACTTCCTTTCCTTAGTTGAGTTTTAGCACGTGCGTGCGCGTTTCGGGTAGATGTTCGAAACGCGACACATTACAATTTCGAATTCGCGCCATTCTTTCTTTCATTTTTTACGAACACTCCCTCCTGTTTTTATTTTCTTTCAGTTTAGNTGCAAATTCTTTCGTTTAACTTTATTTCATTGTGTATCGAAAAGCTTCTAACAATAAATCTTTATNTTATCGTCGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6245#0 AGGATAACCACATTTGCTCGACGATTCGCACCCATGCATACACACACACGCGCACTACCA 60
consensus_6245#1 ------------------------------------------------------------
consensus_6245#2 ------------------------------------------------------------
consensus_6245#0 CAGGCGAACAGGCGAAGGAAGGCGAGGCACAGGCCCGCAAACGTGTCAATATACAAACTT 120
consensus_6245#1 ------------------------------------------------------------
consensus_6245#2 ------------------------------------------------------------
consensus_6245#0 GAATTTAGAAGTGAATCCGTGAGCAAATTACAACTTGAAATCAAATTATACATACCTTCA 180
consensus_6245#1 ------------------------------------------------------------
consensus_6245#2 ------------------------------------------------------------
consensus_6245#0 GAACGTTTACATACACAAATCTAGCAGCATTACAAGGGAAAAGCGAAAAGCGCCCATAAC 240
consensus_6245#1 ------------------------------------------------------------
consensus_6245#2 ------------------------------------------------------------
consensus_6245#0 GATAATTGGGGTGAATGACGCCGCAATACTCCTCGCGTTTACGCAAGCGCGGCTGAACAA 300
consensus_6245#1 ------------------------------------------------------------
consensus_6245#2 ------------------------------------------------------------
consensus_6245#0 AGACAGAGTACTAACCGAGACGGCCGGGAGAAAGGGAGAGCGAAAAAAGAAAAACCACGA 360
consensus_6245#1 ------------------------------------------------------------
consensus_6245#2 ------------------------------------------------------------
consensus_6245#0 GGACAATATTTAGTATTTTCAGTGCAGATTAATACTGCATTTGTTGCGTAATGTGTAACA 420
consensus_6245#1 ------------------------------------------------------------
consensus_6245#2 -----------------------------------------------------------A 1
consensus_6245#0 ATAAAGGGAAAAAGGCCTGGAATGAGGCAACGGGGAGGGGGATGGTGGGTACTAGAATGG 480
consensus_6245#1 ------------------------------------------------------GACCCA 6
consensus_6245#2 GCCAGAATCGNCACGAGGGGAATGAGGCAACGGGGAGGGGGATGGTGGGTACTAGAATGG 61
**
consensus_6245#0 CGCA---ACGCGAGGCTTGGCTTGCCGAATGGGCTACTACACCCTGGTAGAGCGTGTATT 537
consensus_6245#1 CGCGTCCGCGCGAGGCTTGGCTTGCCGAATGGGCTACTACACCCTGGTAGAGCGTGTATT 66
consensus_6245#2 CGCA---ACGCGAGGCTTGGCTTGCCGAATGGGCTACTACACCCTGGTAGAGCGTGTATT 118
*** ****************************************************
consensus_6245#0 TTGAATGGCGATCGTGTAGTTATGTACGTTTAAAATATCGATCATCAACCATAACGAGTT 597
consensus_6245#1 TTGAATGGCGATCGTGTAGTTATGTACGTTTAAAATATCGATCATCAACCATAACGAGTT 126
consensus_6245#2 TTGAATGGCGATCGTGTAGTTATGTACGTTTAAAATATCGATCATCAACCATAACGAGTT 178
************************************************************
consensus_6245#0 CACACACACACACACAC--GCGCATGCATGCATACATTAGCTAACGTTTACATTGTACGG 655
consensus_6245#1 CACACACACACACACAC--GCGCATGCATGCATACATTAGCTAACGTTTACATTGTACGG 184
consensus_6245#2 CACACACACACACACACACGCGCATGCATGCATACATTAGCTAACGTTTACATTGTACGG 238
***************** *****************************************
consensus_6245#0 TTTACCCACTTACTGCTGCAGCCTGCGGGGAATGCAACACCTCTCTAACTACTATATAGT 715
consensus_6245#1 TTTACCCACTTACTGCTGCAGCCTGCGGGGAATGCAACACCTCTCTAACTACTATATAGT 244
consensus_6245#2 TTTACCCACTTACTGCTGCAGCCTGCGGGGAATGCAACACCTCTCTAACTACTATATAGT 298
************************************************************
consensus_6245#0 AGGCTGGATGGAGGCTGGTAGTGCAGAAATTACTGTGCTGTCTCTTTTGCGGAACG-TTT 774
consensus_6245#1 AGGCTGGATGGAGGCTGGTAGTGCAGAAATTACTGTGCTGTCTCTTTTGCGGAACGGTTT 304
consensus_6245#2 AGGCTGGATGGAGGCTGGTAGTGCAGAAATTACTGTGCTGTCTCTTTTGCGGAACGGTTT 358
******************************************************** ***
consensus_6245#0 TTAATGTGTAACTTAACTAGTAGCCTTTGGTTTTAACTTCCTTTCCTTAGTTGAGTTTTA 834
consensus_6245#1 TTAATGTGTAACTTAACTAGTAGCCTTTGGTTTTAACTTCCTTTCCTTAGTTGAGTTTTA 364
consensus_6245#2 TTAATGTGTAACTTAACTAGTAGCCTTTGGTTTTAACTTCCTTTCCTTAGTTGAGTTTTA 418
************************************************************
consensus_6245#0 GCACGTGCGTGCGCGTTTCGGGNAGATGATCGAAACGCGACACATTACAATTTCGAATTC 894
consensus_6245#1 GCACGTGCGTGCGCGTTTCGGGTAGATGATCGAAACGCGACACATTACAATTTCGAATTC 424
consensus_6245#2 GCACGTGCGTGCGCGTTTCGGGTAGATGTTCGAAACGCGACACATTACAATTTCGAATTC 478
********************** ***** *******************************
consensus_6245#0 GCGCCATTCTATCGTTCTTTTTTTACGAACACTCCCTCCTAT----GTTTTCTTTTGTTT 950
consensus_6245#1 GCGCCATTCTATCGTTCTTTTTTTACGAACACTCCCTCCTAT----GTTTTCTTTTGTTT 480
consensus_6245#2 GCGCCATTCTTTCTTTCATTTTTTACGAACACTCCCTCCTGTTTTTATTTTCTTTCAGTT 538
********** ** *** ********************** * ******** **
consensus_6245#0 TAGT-GCAAATTCTTTCGTTTAA-TTTATTTCATTGTGAATCGAAAAGCTTCTAA-AATA 1007
consensus_6245#1 TAGT-GCAAATTCTTTCGTTTAA-TTTATTTCATTGTGAATCGAAAAGCTTCTAA-AATA 537
consensus_6245#2 TAGNTGCAAATTCTTTCGTTTAACTTTATTTCATTGTGTATCGAAAAGCTTCTAACAATA 598
*** ****************** ************** **************** ****
consensus_6245#0 A-TCTTTATTTATGTGTAGCAGTCAAAATATGTGCCGCGCATGACGAGAGGAAGAGAGAG 1066
consensus_6245#1 A-TCTTTATTTATGTGTAGCAGTCAAAATATGTGCCGCGCATGACGAGAGGAAGAGAGAG 596
consensus_6245#2 AATCTTTATNTTATCGTCGT---------------------------------------- 618
* ******* * ** *
consensus_6245#0 AGAGAGAAAGGGATTATACTAATTGTGTATCAAAAGGGGCACGATTTAACTGCAACTGTA 1126
consensus_6245#1 AGAGAGAAAGGGATTATACTAATTGTGTATCAAAAGGGGCACGATTTAACTGCAACTGTA 656
consensus_6245#2 ------------------------------------------------------------
consensus_6245#0 AGTACACAAATCTGCATTTCGGACACACTGATGGGTTTCTTTTCAACTTCAGTGAGTAAA 1186
consensus_6245#1 AGTACACAAATCTGCATTTCGGACA----------------------------------- 681
consensus_6245#2 ------------------------------------------------------------
consensus_6245#0 AGAGGGCTCAGTGATTAGAATGCAAGGAGAGCAGACAGGAAGGAGTGAATTAACGGTCTG 1246
consensus_6245#1 ------------------------------------------------------------
consensus_6245#2 ------------------------------------------------------------
consensus_6245#0 AGTGGT 1252
consensus_6245#1 ------
consensus_6245#2 ------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||