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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6246#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1563 fasta sequence
[TTTTTTTTTGTTTCCACCGAGTGTTTGGAAATGATCTGCCTCAACACAGTATTTCCTGCAAAAGCGTTCACATAATTGTACATATTGTACAGCAAAATGCAAAGCTGTGTATCGTGTAGAGTGAAAAACAATGGGATGATTGCTATTTATCAGCATCCAAATGGGCTGGATGAGATGTTTCACTCAATTACCGACATAAAGGTACAACCGGAAGAATATTTGTGTGTGCCGTGCTATGATGATTTGAAGGTAGCATATCGCTTCAAACAGAGATGCATTCAGAACACGGCACTACGGTTATCGTCTCGGGCTAAAAAGACGACACATGCTCCTGCAGATCAGAGCGTCATTAGTAGTTGTACGGTTGTTTACACAACGTATGATAAATCTGTTCCGGAATCAACTATAAATCAAAATACAGAAAACAACAGCTGCAATGGCAGGGCGAGCACGTCTAATCTTGCACCGGAAATGTCAAATCCTTCGCCGCTTCCCAAGATAGAATTATGCATAGAAAATGAAACGATACAACAGGATGATGTTGAAATTAGCGAAGAACTCATTGACCCGCTACAAGACGAGGAAGATCAACCGTTAGCAAATTATATAATCGGGGTAATAGAAAGCGCAACTAATGACAATGCACCAAAAGACAA----AGCACAAA----GC-AAAGAACAAATCGGCGACCAAACCATAACAGCAGCCACGCAAGAGAGTGGTCAATCCACATCCCTTCTACCGAAACTGCATAGCCTGATGTGTGAGTACTGTTTCAAAGAGTTTACCCTGCTGGCCGACAAGATCGAACATACCGAGTCGCACAAATCGGAAGCGAAACCATTCAAATGTGTGCAGGAAGGTTGCGGCAGATCATTTAAAGACCGCGTAGGTTTGCGATCGCACGTGCGCATCCATTCCGCCGTAAGGCGGTTCGGGTGTCGGTACTGCCCGAGGCGATTCCACACGCTGGGCAATCAGATGGCGCACGAGCGAACACACAGCGGGGAGAAGCCATTTATCTGTCCAAAGTGTGGCAAAGG-TTCGCGGAGGTAGGCAATCTCAAGAATCACATTCGCTTCCACACTGGCGAACGGNCGTACGCTTGCAATCTGTGCGACNAATCGTACAGAACGTACTACTCTCGATCGGTTCATATGCGCTCACATACCAACGAACGACCGAATCTGTGCGGTGACTGCGGGAAAGGGTTCTATTCGAGCGGAAAGCTGACCATCCACCGCCGGACGCACACTGGCGAACGGCCCTACGAATGTACGAGCTGTACGGCAAGGTTTTCCGAAACGTCCTCGCTTAGGCGACACATGGTTGAAAAACACTTAAATAAGTGAACATATATTTAACTGTGTAGGGTAGTATGCCAATTGTTGCAGCACTTAAGGGAACAGCCAACGTATTTCATAAGTTTGAGAGGGATACAACCACAATATTCGTGTTATGTGTGCCTAGTTTACATCATTATTGTTTAAAAAACAGCATACATATATTTTTCTATTATTCAGGAGGAACGACTTTGCCGTATCGCTTAAAAGTATGAATGTATGTGAG]
[+] EMBL CNS095GE [TTTTTTTTTGTTTCCACCGAGTGTTTGGAAATGATCTGCCTCAACACAGTATTTCCTGCAAAAGCGTTCACATAATTGTACATATTGTACAGCAAAATGCAAAGCTGTGTATCGTGTAGAGTGAAAAACAATGGGATGATTGCTATTTATCAGCATCCAAATGGGCTGGATGAGATGTTTCACTCAATTACCGACATAAAGGTACAACCGGAAGAATATTTGTGTGTGCCGTGCTATGATGATTTGAAGGTAGCATATCGCTTCAAACAGAGATGCATTCAGAACACGGCACTACGGTTATCGTCTCGGGCTAAAAAGACGACACATGCTCCTGCAGATCAGAGCGTCATTAGTAGTTGTACGGTTGTTTACACAACGTATGATAAATCTGTTCCGGAATCAACTATAAATCAAAATACAGAAAACAACAGCTGCAATGGCAGGGCGAGCACGTCTAATCTTGCACCGGAAATGTCAAATCCTTCGCCGCTTCCCAAGATAGAATTATGCATAGAAAATGAAACGATACAACAGGATGATGTTGAAATTAGCGAAGAACTCATTGACCCGCTACAAGACGAGGAAGATCAACCGTTAGCAAATTATATAATCGGGGTAATAGAAAGCGCAACTAATGACAATGCACCAAAAGACAA AGCACAAA GC AAAGAACAAATCGGCGACCAAACCATAACAGCAGCCACGCAAGACAGTGGTCAATCCACATCCCTTCTACCGAAACTGCATAGCCTGATGTGTGAGTACTGTTTCAAAGAGTTTACCCTGCTGGCCGACAAGATCGAACATACCGAGTCGCACAAATCGGAAGCGAAACCATTCAAATGTGTGCAGGAAGGTTGCGGCAGATCATTTAAAGACCGCGTAGGTTTGCGATCGCACGTGCGCA ]
[+] EMBL BM596701 [ gGTTTCCACCGAGTGTTTGGAAATGATCTGCCTCAACACAGTATTTCCTGCAAAAGCGTTCACATAATTGTACATATTGCACAGCAAAATGCAAACCTGCGTATCGTGTAGAGTGAAAAACAATGGCATGATTGCTATTTATCAGCATCCAAATGGGTTGAATGAGATGTTTCACTCAATTACCGACATAAAGGTACAACCGGAAGAACATCTTTGTGTGCCGTGCTATGATGATTTGAAGGGAGCATATCGCTTCAAACAGAGATGCATTCAGAACACGGCACCACGGTTATCGTCT ]
[+] EMBL BX624847 [ GCGTCATTAGTAGTTGTACGGATGTTTACACAACGTATGATAAATCTGTTCCGGAATCAACTATAAATCAAAATACAGAAAACAATAGCAGCAATGGCAGGGCGAACACGTCTAATCTTACACCGGAA G ATCCTTCGCCGCTTCCCAAGATAGAATTATGCATAGAAAATGAAACGATACAACAGGATGATGTTGAAATTAGCGAAGAACTCATTGACCCGCTACAAGACGAGGAAGATCAACCGTTAGCAAATTATATAATCGGGGTAATAGAAAGCTCAACTTATGACAATGCACCAAAAGACAATGTGGGTACCGATGCCGCTAAAGAACAAATCGGCGACCAAACCATAACTGCAGCCACCCAAGAGAGGGGTCAATCCTCTTCTCTTCTACCGAAACTGCATAGCCTGATGTGTGAGTACTGTTTCAAAGAGTTTACCCTGCTGACAGACAAGATCGAACATACCGAGTCACACAAATCGGAAGCGAAACCATTCAAATGTGTGCAGGAAGGTTGCGGGAAATCATTTAAAGACCGCGTAGGTTTGCGATCGCACGTGCGCATCCATTCCGCCGTAAGGCGGTTCGGGTGTCGGTACTGCCCGAGGCGATTCCACACGCTGGGCAATCAGATGGCGCACGAGCGAACACACAGCGGGGAGAAGCCATTTATCTGTCCAAAGTGTGGCAAAGGCTTCGCGGAGGTAGGCAATCTCAAGAATCACATTCGCTTCCACACTGGCGAACGGNCGTACGCTTGCAATCTGTGCGACNAATCGTACAGAACGTACTACTC ]
[-] EMBL CNS095GF [ AACCGTTAGCAAATTATATAATCGGGGTAATAGAAAGCGCAACTAATGACAATGCACCAAAAGACAA AGCACAAA GC AAAGAACAAATCGGCGACCAAACCATAACAGCAGCCACGCAAGAGAGTGGTCAATCCACATCCCTTCTACCGAAACTGCATAGCCTGATGTGTGAGTACTGTTTCAAAGAGTTTACCCTGCTGGCCGACAAGATCGAACATACCGAGTCGCACAAATCGGAAGCGAAACCATTCAAATGTGTGCAGGAAGGTTGCGGCAGATCATTTAAAGACCGCGTAGGTTTGCGATCGCACGTGCGCATCCATTCCGCCGTGAAGCGGTTCGGCTGTCGGTACTGCCCGAGGCGATTCCACACGCTGGGCAATCAGATGGCGCACGAGCGAACACACAGCGGGGAGAAGCCATTTATCTGTCCAAAGTGTGGCAAAGG TTCGCGGAGGGAGGCAATCTCAAGAATCATATTCGCTTCCACACCGGCGAACGGCCGTACGCTTGCAATCTGTGCGACAAATCGTACAGAACGCACTACTTTCGATCGGTTCATATGCGCTCACATACCAACGAACGACCGAATCTGTGCGGTGACTGCGGGAAAGGGTTCTATTCGAGCGGAAAGCTGACCATCCACCGCCGGACGCACACTGGCGAACGGCCCTACGAATGTACGAGCTGTACGGCAAGGTTTTCCGAAACGTCCTCGCTTAGGCGACACATGGTTGAAAAACACTTAAATAAGTGAACATATATTTAACTGTGTAGGGTAGTATGCCAATTGTTGCAGCACTTAAGGGAACAGCCAACGTATTTCATAAGTTTGAGAGGGATACAACCACAATATTCGTGTTATGTGTGCCTAGTTTACATCATTATTGTTTAAAAAACAGCATACATATATTTTTCTATTATTCAGGAGGAACGACTTTGCCGTATCGCTTAAAAGTATGAATGTATGTGAG]
consensusID : consensus_6246#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1041 fasta sequence
[GAATCGCGCACGAGGGTGCAGGAAGGTTGCGGCAGATCATTTAAAGACCGCGTAGGTTTGCGATCGCACGTGCGCATCCATTCCGCCGTGAAGCGGTTCGGCTGTCGGTACTGCCCGAGGCGATTCCACACGCTGGGCAATCAGATGGCGCACGAGCGAACACACAGCGGGGAGAAGCCATTTATCTGTCCAAAGTGTGGCAAAGGCTTCGCGGAGGGAGGCAATCTCAAGAATCATATTCGCTTCCACACCGGCGAACGGCCGTACGCTTGCAATCTGTGCGACAAATCGTACAGAACGCACTACTCTCGATCGGTTCATATGCGCTCACATACCAACGAACGACCGTATCTGTGCGGTGACTGCGGGAAAGGGTTCTATTCGAGCGGAAAGCTGACCATCCACCGCCGGACGCACACTGGCGAACGGCCCTACGAATGTACGAGCTGTACGGCAAGGTTTTCCGAAACGTCCTCGCTTAGGCGACACATGGTTAAAAAACACTTAAATAAGTGAACATATATTTAACTGTGTAGGGTAGTATGCCAATTGTTGCACACTTAAAGGGAACAGCCAACGTATTTCATAAGTTTTGAGAGGGGATTACAACCACAAATATCGGTTGTATGTGTTGCCCTAGTTTTACATTCATTATGGTTTAAAAAAACCAGCATACATATATTTCTATACATTCCCAGGAAGCAAACCCNGAACACTTTTTTTCGCCCCGGTNAATCTCCGCTTTTACAACAAGGTTTTTTCGCACACTTCGTCATCTCGCTTGGAGANACTTTTTTANAAANGCCACGAGAAACAAANTTGGCATTAATCTGGTCTTCCACAGAAAACACTNCNCTCTGGGGATATTTTTTTAAAAACCCCCCTCTTATTTTTCCCACAAAAATAGGGCCCCCCAAAAANTTTTCCCCCGGAAAAAAGCTTGTTGGTTTNTATCTCACCCCACTTTTTTAACGCCTTATAAAGACCNCNNNCCACAAGGTGCCCCAANAATAATATCTTCTCACACCGCCCTTTTTTTTC]
[+] EMBL BX467490 [GAATCGCGCACGAGGGTGCAGGAAGGTTGCGGCAGATCATTTAAAGACCGCGTAGGTTTGCGATCGCACGTGCGCATCCATTCCGCCGTGAAGCGGTTCGGCTGTCGGTACTGCCCGAGGCGATTCCACACGCTGGGCAATCAGATGGCGCACGAGCGAACACACAGCGGGGAGAAGCCATTTATCTGTCCAAAGTGTGGCAAAGGCTTCGCGGAGGGAGGCAATCTCAAGAATCATATTCGCTTCCACACCGGCGAACGGCCGTACGCTTGCAATCTGTGCGACAAATCGTACAGAACGCACTACTCTCGATCGGTTCATATGCGCTCACATACCAACGAACGACCGTATCTGTGCGGTGACTGCGGGAAAGGGTTCTATTCGAGCGGAAAGCTGACCATCCACCGCCGGACGCACACTGGCGAACGGCCCTACGAATGTACGAGCTGTACGGCAAGGTTTTCCGAAACGTCCTCGCTTAGGCGACACATGGTTAAAAAACACTTAAATAAGTGAACATATATTTAACTGTGTAGGGTAGTATGCCAATTGTTGCACACTTAAAGGGAACAGCCAACGTATTTCATAAGTTTTGAGAGGGGATTACAACCACAAATATCGGTTGTATGTGTTGCCCTAGTTTTACATTCATTATGGTTTAAAAAAACCAGCATACATATATTTCTATACATTCCCAGGAAGCAAACCCNGAACACTTTTTTTCGCCCCGGTNAATCTCCGCTTTTACAACAAGGTTTTTTCGCACACTTCGTCATCTCGCTTGGAGANACTTTTTTANAAANGCCACGAGAAACAAANTTGGCATTAATCTGGTCTTCCACAGAAAACACTNCNCTCTGGGGATATTTTTTTAAAAACCCCCCTCTTATTTTTCCCACAAAAATAGGGCCCCCCAAAAANTTTTCCCCCGGAAAAAAGCTTGTTGGTTTNTATCTCACCCCACTTTTTTAACGCCTTATAAAGACCNCNNNCCACAAGGTGCCCCAANAATAATATCTTCTCACACCGCCCTTTTTTTTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6246#0 TTTTTTTTTGTTTCCACCGAGTGTTTGGAAATGATCTGCCTCAACACAGTATTTCCTGCA 60
consensus_6246#1 ------------------------------------------------------------
consensus_6246#0 AAAGCGTTCACATAATTGTACATATTGTACAGCAAAATGCAAAGCTGTGTATCGTGTAGA 120
consensus_6246#1 ------------------------------------------------------------
consensus_6246#0 GTGAAAAACAATGGGATGATTGCTATTTATCAGCATCCAAATGGGCTGGATGAGATGTTT 180
consensus_6246#1 ------------------------------------------------------------
consensus_6246#0 CACTCAATTACCGACATAAAGGTACAACCGGAAGAATATTTGTGTGTGCCGTGCTATGAT 240
consensus_6246#1 ------------------------------------------------------------
consensus_6246#0 GATTTGAAGGTAGCATATCGCTTCAAACAGAGATGCATTCAGAACACGGCACTACGGTTA 300
consensus_6246#1 ------------------------------------------------------------
consensus_6246#0 TCGTCTCGGGCTAAAAAGACGACACATGCTCCTGCAGATCAGAGCGTCATTAGTAGTTGT 360
consensus_6246#1 ------------------------------------------------------------
consensus_6246#0 ACGGTTGTTTACACAACGTATGATAAATCTGTTCCGGAATCAACTATAAATCAAAATACA 420
consensus_6246#1 ------------------------------------------------------------
consensus_6246#0 GAAAACAACAGCTGCAATGGCAGGGCGAGCACGTCTAATCTTGCACCGGAAATGTCAAAT 480
consensus_6246#1 ------------------------------------------------------------
consensus_6246#0 CCTTCGCCGCTTCCCAAGATAGAATTATGCATAGAAAATGAAACGATACAACAGGATGAT 540
consensus_6246#1 ------------------------------------------------------------
consensus_6246#0 GTTGAAATTAGCGAAGAACTCATTGACCCGCTACAAGACGAGGAAGATCAACCGTTAGCA 600
consensus_6246#1 ------------------------------------------------------------
consensus_6246#0 AATTATATAATCGGGGTAATAGAAAGCGCAACTAATGACAATGCACCAAAAGACAAAGCA 660
consensus_6246#1 ------------------------------------------------------------
consensus_6246#0 CAAAGCAAAGAACAAATCGGCGACCAAACCATAACAGCAGCCACGCAAGAGAGTGGTCAA 720
consensus_6246#1 ------------------------------------------------------------
consensus_6246#0 TCCACATCCCTTCTACCGAAACTGCATAGCCTGATGTGTGAGTACTGTTTCAAAGAGTTT 780
consensus_6246#1 ------------------------------------------------------------
consensus_6246#0 ACCCTGCTGGCCGACAAGATCGAACATACCGAGTCGCACAAATCGGAAGCGAAACCATTC 840
consensus_6246#1 ---------------------------------------------------GAATCGCGC 9
** * *
consensus_6246#0 AAATGTGTGCAGGAAGGTTGCGGCAGATCATTTAAAGACCGCGTAGGTTTGCGATCGCAC 900
consensus_6246#1 ACGAGGGTGCAGGAAGGTTGCGGCAGATCATTTAAAGACCGCGTAGGTTTGCGATCGCAC 69
* * ******************************************************
consensus_6246#0 GTGCGCATCCATTCCGCCGTAAGGCGGTTCGGGTGTCGGTACTGCCCGAGGCGATTCCAC 960
consensus_6246#1 GTGCGCATCCATTCCGCCGTGAAGCGGTTCGGCTGTCGGTACTGCCCGAGGCGATTCCAC 129
******************** * ********* ***************************
consensus_6246#0 ACGCTGGGCAATCAGATGGCGCACGAGCGAACACACAGCGGGGAGAAGCCATTTATCTGT 1020
consensus_6246#1 ACGCTGGGCAATCAGATGGCGCACGAGCGAACACACAGCGGGGAGAAGCCATTTATCTGT 189
************************************************************
consensus_6246#0 CCAAAGTGTGGCAAAGG-TTCGCGGAGGTAGGCAATCTCAAGAATCACATTCGCTTCCAC 1079
consensus_6246#1 CCAAAGTGTGGCAAAGGCTTCGCGGAGGGAGGCAATCTCAAGAATCATATTCGCTTCCAC 249
***************** ********** ****************** ************
consensus_6246#0 ACTGGCGAACGGNCGTACGCTTGCAATCTGTGCGACNAATCGTACAGAACGTACTACTCT 1139
consensus_6246#1 ACCGGCGAACGGCCGTACGCTTGCAATCTGTGCGACAAATCGTACAGAACGCACTACTCT 309
** ********* *********************** ************** ********
consensus_6246#0 CGATCGGTTCATATGCGCTCACATACCAACGAACGACCGAATCTGTGCGGTGACTGCGGG 1199
consensus_6246#1 CGATCGGTTCATATGCGCTCACATACCAACGAACGACCGTATCTGTGCGGTGACTGCGGG 369
*************************************** ********************
consensus_6246#0 AAAGGGTTCTATTCGAGCGGAAAGCTGACCATCCACCGCCGGACGCACACTGGCGAACGG 1259
consensus_6246#1 AAAGGGTTCTATTCGAGCGGAAAGCTGACCATCCACCGCCGGACGCACACTGGCGAACGG 429
************************************************************
consensus_6246#0 CCCTACGAATGTACGAGCTGTACGGCAAGGTTTTCCGAAACGTCCTCGCTTAGGCGACAC 1319
consensus_6246#1 CCCTACGAATGTACGAGCTGTACGGCAAGGTTTTCCGAAACGTCCTCGCTTAGGCGACAC 489
************************************************************
consensus_6246#0 ATGGTTGAAAAACACTTAAATAAGTGAACATATATTTAACTGTGTAGGGTAGTATGCCAA 1379
consensus_6246#1 ATGGTTAAAAAACACTTAAATAAGTGAACATATATTTAACTGTGTAGGGTAGTATGCCAA 549
****** *****************************************************
consensus_6246#0 TTGTTGCAGCACTTAAGGGAACAGCCAACGTATTTCATAAGTTT---GAGAGGGATACAA 1436
consensus_6246#1 TTGTTGCACACTTAAAGGGAACAGCCAACGTATTTCATAAGTTTTGAGAGGGGATTACAA 609
******** * ****************************** *** ** *****
consensus_6246#0 CCACAA-TATTCGTGTTATGTGTG--CCTAGTTT-ACAT-CATTATTGTTTAAAAAA--C 1489
consensus_6246#1 CCACAAATATCGGTTGTATGTGTTGCCCTAGTTTTACATTCATTATGGTTTAAAAAAACC 669
****** *** ** ******* ******** **** ****** ********** *
consensus_6246#0 AGCATACATATATTTTTCTAT-TATTCAGGAGGAACGACTTTGCCGTATCGCTTAAAAGT 1548
consensus_6246#1 AGCATACATATATTTCTATACATTCCCAGGAAGCAAACCCNGAACACTTTTTTTCGCCCC 729
*************** * ** * ***** * * * * * **
consensus_6246#0 A-TGAATGTATGTGAG-------------------------------------------- 1563
consensus_6246#1 GGTNAATCTCCGCTTTTACAACAAGGTTTTTTCGCACACTTCGTCATCTCGCTTGGAGAN 789
* *** * *
consensus_6246#0 ------------------------------------------------------------
consensus_6246#1 ACTTTTTTANAAANGCCACGAGAAACAAANTTGGCATTAATCTGGTCTTCCACAGAAAAC 849
consensus_6246#0 ------------------------------------------------------------
consensus_6246#1 ACTNCNCTCTGGGGATATTTTTTTAAAAACCCCCCTCTTATTTTTCCCACAAAAATAGGG 909
consensus_6246#0 ------------------------------------------------------------
consensus_6246#1 CCCCCCAAAAANTTTTCCCCCGGAAAAAAGCTTGTTGGTTTNTATCTCACCCCACTTTTT 969
consensus_6246#0 ------------------------------------------------------------
consensus_6246#1 TAACGCCTTATAAAGACCNCNNNCCACAAGGTGCCCCAANAATAATATCTTCTCACACCG 1029
consensus_6246#0 ------------
consensus_6246#1 CCCTTTTTTTTC 1041
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||