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Anopheles gambiae
cluster # 6252 cluster # 6252       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6252#0 length = 1059 sequences # 4  
consensus_6252#1 length = 786 sequences # 1  

consensusID : consensus_6252#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1059
fasta sequence
                              [CCGGCGAGTTTGAGAACATTTTGGTCGAGCTGATCGACAATCAGCGGTGGTCAGCGGCGATAAATCACGTAAAACAGCACAAACAAATGTCGAATCATTCTGCATCGAATTACAACCTTTCTGGGGGTGCCAGCGGTAGTAGTGGCGGTGGCAGTGGTGTTGGTGGCATGATGTTCGCCTCGGGTGGCGGTAACTGCAGCATTACTGGTGGCGGCGGCGTTGGCGATGGTCTGTTCGCCAATCTTGGCACGGAATTTAAACCCGTCGATGATTTATCGATCATATTGAACGTTTACGCTCACCGGCTGACGAAGGATAGAAATGATGTGTTCATTGTTTCGCGTTCGGAGCTCGAGCTGAGTGAAATCTATCAAATTCTCATGGAGAACCTGCTGCACGTGTCGTCAGCGCTATCCAACATGGAAATCAGCATGAAAGCTAACACAAGTTCCAGCTCCTCGACCGTTACAACGATGACGACAATTCCAGCAGTAATTGGTACGGGCCCCAGCACCGGTCCAGGAAACGGCGGAACCGGAAATGGCCATTCAGGAGCACCGGGCAACGCAGCGGGCTCGTTAGCCGGTTCCACTGCACAGGGCAGCAGCAATCTACCACCACCGCCGCCACCTGTATTGGCACCGACCAATCCGTTCAAAGACACCGTTGACATCATTACGACACTGTAGGCAAACTAACGGGGCAAACGACGCTAGGGAGCTGGTATTACAATGCATGTGGATGGTCGCTTGTTGCTGTTGAAATGTAGGCTCTCGGTTTGGGTCGATCCGCCTGGAACACACCGGACCGAGGCCGGGCTTACACGACGATGAAGGCTTTTGCATGCAAATTTGATTCCATTTTGGCGTGACACTCAGGAACCGAACCGGTTTGATTATCCACCATAATCCGTGTCCTCTTTCCGTCCTGCTGTGTCGTTATCTTCCGTCATTTTCCGTCATTTTCCGTTGTTTTTTTTGTCTGAAGCCATCTTTCAAGACACTGGTACAACAGCAAAGAAAACCAATTGATTTAGCCCGCTTTGTCTGCTGGTGCGAT]

[+] EMBL BM622919             [CCGGCGAGTTTGAGAACATTTTGGTCGAGCTGATCGACAATCAGCGGTGGTCAGCGGCGATAAATCACGTAAAACAGCACAAACAAATGTCGAATCATTCTGCATCGAATTACAACCTTTCTGGGGGTGCCAGCGGTAGTAGTGGCGGTGGCAGTGGTGTTGGTGGCATGATGTTCGCCTCGGGTGGCGGTAACTGCAGCATTACTGGTGGCGGCGGCGTTGGCGATGGTCTGTTCGCCAATCTTGGCACGGAATTTAAACCCGTCGATGATTTATCGATCATATTGAACGTTTACGCTCACCGGCTGACGAAGGATAGAAATGATGTGTTCATTGTTTCGCGTTCGGAGCTCGAGCTGAGTGAAATCTATCAAATTCTCATGGAGAACCTGCTGCACGTGTCGTCAGCGCTATCCAACATGGAAATCAGCATGAAAGCTAACACAAGTTCCAGCTCCTCGACCGTTACAACGATGACGACAATTCCAGCAGTAATTGGTACGGGCCCCAGCACCGGTCCAGGAAACGGCGGAACCGGAAATGGCCATTCAGGAGCACCGGGCAACGCAGCGGGCTCGTTAGCCGGTTCCACTGCACAGGGCAGCAGCAATCTACCACCACCGCCGCCACCTGTATTGGCACCGACCA                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL BM608469             [                                                                            ccgCAAACAAATGTCGAATCATTCTGCATCGAATTACAACCTTTCTGGGGGCGCCAGCGGTAGTAGTGGCGGTGGTAGTGGTGTTGGTGGCATGATGTTCGCCTCGGGTGGCGGTAACTGCAGCATTACTGGTGGCGGCGGCGTTGGCGATGGTCTGTTCGCCAATCTTGGCACGGAATTTAAACCCGTCGATGATTTATCGATCATATTGAACGTTTACGCTCACCGGCTGACGAAGGATAGAAATGATGTGTTCATTGTTTCACGTTCGGAGCTCGAGCTGAGTGAAATCTATCAAATTCTCATGGAGAACCTGCTGCACGTGTCGTCAGCGCTATCCAACATGGAAATCAGCATGAAAGCTAACACAAGTTCCAGCTCCTCGACCGTTACAACGATGACGACAATTCCAGCAGTAATTGGTACGGGCCCCAGCACCGGTCCAGGGAACGGCGGAACCGGAAATGGCCATTCAGGAGCACCGGGCAACGCAGCGGGCTCGTTATCCGGTTCCACTGCACAGGGCAGCAGCAATCTACCACCACCGCCGCCGCCTGTATTGGCACCGACCAATCCGTTCAAAGACACCGTTGACATCATTACGACACTGTAGGCAAACTAACGGGGCAAACGACGCTAGGG                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL BM576202             [                                                                                                                                                                                                                                                                                                                                                                                                                           ccgCCAACATGGAAATCAGCATGAAAGCTAACACAAGTTCCAGCTCCTCGACCGTTACAACGATGACGACAATTCCAGCAGTAATTGGTACGGGCCCCAGCACCGGTCCAGGAAACGGCGGAACCGGAAATGGCCATTCAGGAGCACCGGGCAACGCAGCGGGCTCGTTAGCCGGTTCCACTGCACAGGGCAGCAGCAATCTACCACCACCGCCGCCACCTGTATTGGCACCGACCAATCCGTTCAAAGACACCGTTGACATCATTACGACACTGTAGGCAAACTAACGGGGCAAACGACGCTAGGGAGCTGGTATTACAATGCATGTGGATGGTCGCTTGTTGCTGTTGAAATGTAGGCTCTCGGTTTGGGTCGATCCGCCTGGAACACACCGGACCGAGGCCGGGCTTACACGACGATGAAGGCTTTTGCATGCAAATTTGATTCCATTTTGGCGTGACACTCAGGAACCGAACCGGTTTGATTATCCACCATAATCCGTGTCCTCTTTCCGTCCTGCTGTGTCGTTATCTTCCGTCATTTTCCGTCATTTTCCGTTGTTTTTTTTGTCTGAAGCCATCTTTCAAGACACTGGTACAACAGCAAAGAAAACCAATTGATTTAGCCCGCTTTGTCTGCTGGTGCGAT]
[+] EMBL BX614223             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CCGGTTCCACTGCACAGGGCAGCAGCAATCTACCACCACCGCCGCCACCTGTATTGGCACCGACCAATCCGTTCAAAGACACCGTTGACATCATTACGACACTGTAGGCAAACTAACGGGGCAAACGACGCTAGGGAGCTGGTATTACAATGCATGTGGATGGTCGCTTGTTGCTGTTGAAATGTAGGCTCTCGGTTTGGGTCGATCCGCCTGGAACACACCGGACCGAGGCCGGGCTTACACGACGATGAAGGCTTTTGCATGCAAATTTGATTCCATTTTGGCGTGACACTCAGGAACCGAACCGGTTTGATTATCCACCATAATCCGTGTCCTCTTTCCGTCCTGCTGTGTCGTTATCTTCCGTCATTTTCCGTCATTTTCCGTTGTTTTTTTTGTCTGAAGCCATCTTTCAAGACACTGGTACAACAGCAAAGAAAACCAATTGA                            ]


>consensus_6252#0 CCGGCGAGTTTGAGAACATTTTGGTCGAGCTGATCGACAATCAGCGGTGGTCAGCGGCGA TAAATCACGTAAAACAGCACAAACAAATGTCGAATCATTCTGCATCGAATTACAACCTTT CTGGGGGTGCCAGCGGTAGTAGTGGCGGTGGCAGTGGTGTTGGTGGCATGATGTTCGCCT CGGGTGGCGGTAACTGCAGCATTACTGGTGGCGGCGGCGTTGGCGATGGTCTGTTCGCCA ATCTTGGCACGGAATTTAAACCCGTCGATGATTTATCGATCATATTGAACGTTTACGCTC ACCGGCTGACGAAGGATAGAAATGATGTGTTCATTGTTTCGCGTTCGGAGCTCGAGCTGA GTGAAATCTATCAAATTCTCATGGAGAACCTGCTGCACGTGTCGTCAGCGCTATCCAACA TGGAAATCAGCATGAAAGCTAACACAAGTTCCAGCTCCTCGACCGTTACAACGATGACGA CAATTCCAGCAGTAATTGGTACGGGCCCCAGCACCGGTCCAGGAAACGGCGGAACCGGAA ATGGCCATTCAGGAGCACCGGGCAACGCAGCGGGCTCGTTAGCCGGTTCCACTGCACAGG GCAGCAGCAATCTACCACCACCGCCGCCACCTGTATTGGCACCGACCAATCCGTTCAAAG ACACCGTTGACATCATTACGACACTGTAGGCAAACTAACGGGGCAAACGACGCTAGGGAG CTGGTATTACAATGCATGTGGATGGTCGCTTGTTGCTGTTGAAATGTAGGCTCTCGGTTT GGGTCGATCCGCCTGGAACACACCGGACCGAGGCCGGGCTTACACGACGATGAAGGCTTT TGCATGCAAATTTGATTCCATTTTGGCGTGACACTCAGGAACCGAACCGGTTTGATTATC CACCATAATCCGTGTCCTCTTTCCGTCCTGCTGTGTCGTTATCTTCCGTCATTTTCCGTC ATTTTCCGTTGTTTTTTTTGTCTGAAGCCATCTTTCAAGACACTGGTACAACAGCAAAGA AAACCAATTGATTTAGCCCGCTTTGTCTGCTGGTGCGAT



consensusID : consensus_6252#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 786
fasta sequence
                              [TGCCTGTTGATGGTCNGCTTGTNTGCTGTTCGAANTGTACGCGCTATCGGTTCTGGGTTGATCCGCCTGGAACACAACGGAACGGGGCCGGGCTTNNCACGACGATGAAGGCTATATTGCATGCAAATTTGATNNCCATTTTGGCGTGACACTCAGGAACCTGAACCGGTTTGATTATCCACCATAATCCGTGTACCTCTTTCCGTCCTGCTGTGTCGTATACTTCCGTCATTATTACCGTCATTTTCCGTTGTTTTTTTGTCTGAAGCCATCTTTCAAGGCACTGGTACAACAGCAAAGAAAACCAATTGATTTAGCCCGCTTTGTCTGCTGGTGCGATTTNATACGACGACATTCAACGCGAATTGCGAGACCCCAGCACCGATATCCATTCGCCCGTGTAATGTGATTTTAAGTGAGGATCAAACCCGAAGCTGGAAAAGTCAAATGTATTCGAAACGAACCGTTTCACTGGAAACGTGTCACACGGAACACCAAAAAAAACCGTTTGCGAGAAGCAGCGCAGGCAGGACGGGCATGTGTGATAATACATGTGACAGTGAAGACGGTGTGGTCCATNTTAAATTGCATAAAGTCCCGTGCTTGGCGAAGCGTTCCGAATTCCCNTTTAAATANATTTATCCCACTTCATCCATCCATCNATCATCAGCGGGAGATTGCTGGAGTGCGGTGCTGTTNAAGTATATTTATTGATTGNGACAATGGGGCTATCCTNTACGCAGCTGNNAACAAGGAAAATAATCTCATCAGAAATCTGTCGCTACC]

[+] EMBL AL932794             [TGCCTGTTGATGGTCNGCTTGTNTGCTGTTCGAANTGTACGCGCTATCGGTTCTGGGTTGATCCGCCTGGAACACAACGGAACGGGGCCGGGCTTNNCACGACGATGAAGGCTATATTGCATGCAAATTTGATNNCCATTTTGGCGTGACACTCAGGAACCTGAACCGGTTTGATTATCCACCATAATCCGTGTACCTCTTTCCGTCCTGCTGTGTCGTATACTTCCGTCATTATTACCGTCATTTTCCGTTGTTTTTTTGTCTGAAGCCATCTTTCAAGGCACTGGTACAACAGCAAAGAAAACCAATTGATTTAGCCCGCTTTGTCTGCTGGTGCGATTTNATACGACGACATTCAACGCGAATTGCGAGACCCCAGCACCGATATCCATTCGCCCGTGTAATGTGATTTTAAGTGAGGATCAAACCCGAAGCTGGAAAAGTCAAATGTATTCGAAACGAACCGTTTCACTGGAAACGTGTCACACGGAACACCAAAAAAAACCGTTTGCGAGAAGCAGCGCAGGCAGGACGGGCATGTGTGATAATACATGTGACAGTGAAGACGGTGTGGTCCATNTTAAATTGCATAAAGTCCCGTGCTTGGCGAAGCGTTCCGAATTCCCNTTTAAATANATTTATCCCACTTCATCCATCCATCNATCATCAGCGGGAGATTGCTGGAGTGCGGTGCTGTTNAAGTATATTTATTGATTGNGACAATGGGGCTATCCTNTACGCAGCTGNNAACAAGGAAAATAATCTCATCAGAAATCTGTCGCTACC]


>consensus_6252#1 TGCCTGTTGATGGTCNGCTTGTNTGCTGTTCGAANTGTACGCGCTATCGGTTCTGGGTTG ATCCGCCTGGAACACAACGGAACGGGGCCGGGCTTNNCACGACGATGAAGGCTATATTGC ATGCAAATTTGATNNCCATTTTGGCGTGACACTCAGGAACCTGAACCGGTTTGATTATCC ACCATAATCCGTGTACCTCTTTCCGTCCTGCTGTGTCGTATACTTCCGTCATTATTACCG TCATTTTCCGTTGTTTTTTTGTCTGAAGCCATCTTTCAAGGCACTGGTACAACAGCAAAG AAAACCAATTGATTTAGCCCGCTTTGTCTGCTGGTGCGATTTNATACGACGACATTCAAC GCGAATTGCGAGACCCCAGCACCGATATCCATTCGCCCGTGTAATGTGATTTTAAGTGAG GATCAAACCCGAAGCTGGAAAAGTCAAATGTATTCGAAACGAACCGTTTCACTGGAAACG TGTCACACGGAACACCAAAAAAAACCGTTTGCGAGAAGCAGCGCAGGCAGGACGGGCATG TGTGATAATACATGTGACAGTGAAGACGGTGTGGTCCATNTTAAATTGCATAAAGTCCCG TGCTTGGCGAAGCGTTCCGAATTCCCNTTTAAATANATTTATCCCACTTCATCCATCCAT CNATCATCAGCGGGAGATTGCTGGAGTGCGGTGCTGTTNAAGTATATTTATTGATTGNGA CAATGGGGCTATCCTNTACGCAGCTGNNAACAAGGAAAATAATCTCATCAGAAATCTGTC GCTACC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6252#0      CCGGCGAGTTTGAGAACATTTTGGTCGAGCTGATCGACAATCAGCGGTGGTCAGCGGCGA 60
consensus_6252#1      ------------------------------------------------------------
                                                                                  

consensus_6252#0      TAAATCACGTAAAACAGCACAAACAAATGTCGAATCATTCTGCATCGAATTACAACCTTT 120
consensus_6252#1      ------------------------------------------------------------
                                                                                  

consensus_6252#0      CTGGGGGTGCCAGCGGTAGTAGTGGCGGTGGCAGTGGTGTTGGTGGCATGATGTTCGCCT 180
consensus_6252#1      ------------------------------------------------------------
                                                                                  

consensus_6252#0      CGGGTGGCGGTAACTGCAGCATTACTGGTGGCGGCGGCGTTGGCGATGGTCTGTTCGCCA 240
consensus_6252#1      ------------------------------------------------------------
                                                                                  

consensus_6252#0      ATCTTGGCACGGAATTTAAACCCGTCGATGATTTATCGATCA--TATTGAACGTTTACGC 298
consensus_6252#1      ------------------TGCCTGTTGATGGTCNGCTTGTNTGCTGTTCGAANTGTACGC 42
                                          ** ** **** *       *    * **  *  * *****

consensus_6252#0      TC-ACCGGCTGACGAAGGATAGAAATGATGTGTTCATTGTTTCGCGTTCGGAGCTCGAGC 357
consensus_6252#1      GCTATCGGTTCTGGGTTGATCCGCCTG--GAACACAACGGAACGGGGCCGGGCTTNNCAC 100
                       * * *** *   *   ***     **  *    **  *   ** *  ***   *    *

consensus_6252#0      TGAG-TGAAATCTATCAAATTCTCATGGAGAACCTGCTGCACGTGTCGTCAGCGCTATCC 416
consensus_6252#1      GACGATGAAGGCTAT----ATTGCATGCA-AATTTGATNNCCATTTTGGCGTGACACTCA 155
                         * ****  ****     *  **** * **  ** *   * * * * *    *  ** 

consensus_6252#0      AACATGGAAATCAGCATGAAAGCTAACACAAGTTCCAGCTCCTCGACCGTTACAACGATG 476
consensus_6252#1      GGAACCTGAACCGGTTTGATTATCCACCATAATCCGTGTACCTCTTTCCGTCCTGCTGTG 215
                         *    ** * *  ***      **   * * *  *  ****   *  * *  *  **

consensus_6252#0      ACG-ACAATTCCAGCAGTAATTGGTACGGGCCCCAGCACCGGTCCAGGAAACGGCGGAAC 535
consensus_6252#1      TCGTATACTTCCGTCATTATTACCGTCATTTTCCGTTGTTTTTTTGTCTGAAGCCATCTT 275
                       ** * * ****  ** ** *     *     **        *       * * *     

consensus_6252#0      CGGAAATGGCCATTCAGGAGCACCGGGCAACGCAGCGGGCTCGTTAGCCGGTTCCACTGC 595
consensus_6252#1      TCAAGGCACTGGTACAACAGCA--AAGAAAACCAATTGAT---TTAGCCCGCTTTGTCTG 330
                         *        * **  ****    * **  **   *     ****** * *       

consensus_6252#0      ACAGGGCAGCAGCAATCTACCACCACCGCCGCCACCTGTATTGGCACCGACCAATCCGTT 655
consensus_6252#1      CTGGTGCGATTTNATACGACGACATTCAACGCGAATTGCGA-GACCCCAGCACCGATATC 389
                         * **      *  * ** **   *  *** *  **    * * **  *       * 

consensus_6252#0      CAAAGACACCGTTGACATCATTACGACACTGTAGGCAAACTAACGGGGCAAACGACGCTA 715
consensus_6252#1      CATTCGCCCGTGTAATGTGATTTTAAGTGAGGATCAAACCCGAAGCTGGAAAAGTCA--A 447
                      **    * *   * *  * ***   *    * *   ** *  * *  * *** * *   *

consensus_6252#0      GGGAGCTGGTATTACAATGCATGTGGATGGTCGCTTGTTGCTGTTGAAATGTAGGCTCTC 775
consensus_6252#1      ATGTATTCGAA--ACGAACCGTTTCACTGGAAACGTGTCACACGGAACACCAAAAAAAAC 505
                        *   * * *  ** *  * * *   ***   * ***  *     * *   *      *

consensus_6252#0      GGTTTGGGTCGATCCGCCTGGAACACACCGGACCGAGGCCGGGCTTACACGACGATGAAG 835
consensus_6252#1      CGTTTGCGAGAAGCAGCGCAGGCAGGACGGGCATGTGTGATAATACATGTGACAGTGAAG 565
                       ***** *   * * **   *     ** **   * *         *   ***  *****

consensus_6252#0      GCTTTTGCATGCAAATTTGATTCCATTTTGGCGTGACACTCAGGAACCGAACCGGTTTGA 895
consensus_6252#1      ACGGTGTGGTCCATNTTAAATTGCATAAAGTCCCGTGCTTGGCGAAGCGTTCCGAATTCC 625
                       *  *    * **  **  *** ***   * *  *    *   *** **  ***  **  

consensus_6252#0      TTATCCACCATAAT----CCGTGTCCTCTTTCCGTCCTGCTGTGTCGTTATCTTCCGTCA 951
consensus_6252#1      CNTTTAAATANATTTATCCCACTTCATCCATCCATCNATCATCAGCGGGAGATTGC-TGG 684
                         *  *  * * *    **   ** **  *** **   *     **  *  ** * *  

consensus_6252#0      TTTTCCGTCATTTTCCGTTGTTTTTTTTGTCTGAAGCCATCTTTCAAGACACTGGTACAA 1011
consensus_6252#1      AGTGCGGTGCTGTTNAAGTATATTTATTGATTGNGACAATGGGGCTATCCTNTA-CGCAG 743
                        * * **  * **    * * *** ***  **   * **    * *  *  *    ** 

consensus_6252#0      CAGCAAAGAAAACCAATTGATTTAGCCCGCTTTGTCTGCTGGTGCGAT 1059
consensus_6252#1      CTGNNAACAAGGA-AAATAATCTCATCAGAA--ATCTGTCGCTACC-- 786
                      * *  ** **    ** * ** *   * *     ****  * * *   




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)