These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6252#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1059 fasta sequence [CCGGCGAGTTTGAGAACATTTTGGTCGAGCTGATCGACAATCAGCGGTGGTCAGCGGCGATAAATCACGTAAAACAGCACAAACAAATGTCGAATCATTCTGCATCGAATTACAACCTTTCTGGGGGTGCCAGCGGTAGTAGTGGCGGTGGCAGTGGTGTTGGTGGCATGATGTTCGCCTCGGGTGGCGGTAACTGCAGCATTACTGGTGGCGGCGGCGTTGGCGATGGTCTGTTCGCCAATCTTGGCACGGAATTTAAACCCGTCGATGATTTATCGATCATATTGAACGTTTACGCTCACCGGCTGACGAAGGATAGAAATGATGTGTTCATTGTTTCGCGTTCGGAGCTCGAGCTGAGTGAAATCTATCAAATTCTCATGGAGAACCTGCTGCACGTGTCGTCAGCGCTATCCAACATGGAAATCAGCATGAAAGCTAACACAAGTTCCAGCTCCTCGACCGTTACAACGATGACGACAATTCCAGCAGTAATTGGTACGGGCCCCAGCACCGGTCCAGGAAACGGCGGAACCGGAAATGGCCATTCAGGAGCACCGGGCAACGCAGCGGGCTCGTTAGCCGGTTCCACTGCACAGGGCAGCAGCAATCTACCACCACCGCCGCCACCTGTATTGGCACCGACCAATCCGTTCAAAGACACCGTTGACATCATTACGACACTGTAGGCAAACTAACGGGGCAAACGACGCTAGGGAGCTGGTATTACAATGCATGTGGATGGTCGCTTGTTGCTGTTGAAATGTAGGCTCTCGGTTTGGGTCGATCCGCCTGGAACACACCGGACCGAGGCCGGGCTTACACGACGATGAAGGCTTTTGCATGCAAATTTGATTCCATTTTGGCGTGACACTCAGGAACCGAACCGGTTTGATTATCCACCATAATCCGTGTCCTCTTTCCGTCCTGCTGTGTCGTTATCTTCCGTCATTTTCCGTCATTTTCCGTTGTTTTTTTTGTCTGAAGCCATCTTTCAAGACACTGGTACAACAGCAAAGAAAACCAATTGATTTAGCCCGCTTTGTCTGCTGGTGCGAT] [+] EMBL BM622919 [CCGGCGAGTTTGAGAACATTTTGGTCGAGCTGATCGACAATCAGCGGTGGTCAGCGGCGATAAATCACGTAAAACAGCACAAACAAATGTCGAATCATTCTGCATCGAATTACAACCTTTCTGGGGGTGCCAGCGGTAGTAGTGGCGGTGGCAGTGGTGTTGGTGGCATGATGTTCGCCTCGGGTGGCGGTAACTGCAGCATTACTGGTGGCGGCGGCGTTGGCGATGGTCTGTTCGCCAATCTTGGCACGGAATTTAAACCCGTCGATGATTTATCGATCATATTGAACGTTTACGCTCACCGGCTGACGAAGGATAGAAATGATGTGTTCATTGTTTCGCGTTCGGAGCTCGAGCTGAGTGAAATCTATCAAATTCTCATGGAGAACCTGCTGCACGTGTCGTCAGCGCTATCCAACATGGAAATCAGCATGAAAGCTAACACAAGTTCCAGCTCCTCGACCGTTACAACGATGACGACAATTCCAGCAGTAATTGGTACGGGCCCCAGCACCGGTCCAGGAAACGGCGGAACCGGAAATGGCCATTCAGGAGCACCGGGCAACGCAGCGGGCTCGTTAGCCGGTTCCACTGCACAGGGCAGCAGCAATCTACCACCACCGCCGCCACCTGTATTGGCACCGACCA ] [+] EMBL BM608469 [ ccgCAAACAAATGTCGAATCATTCTGCATCGAATTACAACCTTTCTGGGGGCGCCAGCGGTAGTAGTGGCGGTGGTAGTGGTGTTGGTGGCATGATGTTCGCCTCGGGTGGCGGTAACTGCAGCATTACTGGTGGCGGCGGCGTTGGCGATGGTCTGTTCGCCAATCTTGGCACGGAATTTAAACCCGTCGATGATTTATCGATCATATTGAACGTTTACGCTCACCGGCTGACGAAGGATAGAAATGATGTGTTCATTGTTTCACGTTCGGAGCTCGAGCTGAGTGAAATCTATCAAATTCTCATGGAGAACCTGCTGCACGTGTCGTCAGCGCTATCCAACATGGAAATCAGCATGAAAGCTAACACAAGTTCCAGCTCCTCGACCGTTACAACGATGACGACAATTCCAGCAGTAATTGGTACGGGCCCCAGCACCGGTCCAGGGAACGGCGGAACCGGAAATGGCCATTCAGGAGCACCGGGCAACGCAGCGGGCTCGTTATCCGGTTCCACTGCACAGGGCAGCAGCAATCTACCACCACCGCCGCCGCCTGTATTGGCACCGACCAATCCGTTCAAAGACACCGTTGACATCATTACGACACTGTAGGCAAACTAACGGGGCAAACGACGCTAGGG ] [+] EMBL BM576202 [ ccgCCAACATGGAAATCAGCATGAAAGCTAACACAAGTTCCAGCTCCTCGACCGTTACAACGATGACGACAATTCCAGCAGTAATTGGTACGGGCCCCAGCACCGGTCCAGGAAACGGCGGAACCGGAAATGGCCATTCAGGAGCACCGGGCAACGCAGCGGGCTCGTTAGCCGGTTCCACTGCACAGGGCAGCAGCAATCTACCACCACCGCCGCCACCTGTATTGGCACCGACCAATCCGTTCAAAGACACCGTTGACATCATTACGACACTGTAGGCAAACTAACGGGGCAAACGACGCTAGGGAGCTGGTATTACAATGCATGTGGATGGTCGCTTGTTGCTGTTGAAATGTAGGCTCTCGGTTTGGGTCGATCCGCCTGGAACACACCGGACCGAGGCCGGGCTTACACGACGATGAAGGCTTTTGCATGCAAATTTGATTCCATTTTGGCGTGACACTCAGGAACCGAACCGGTTTGATTATCCACCATAATCCGTGTCCTCTTTCCGTCCTGCTGTGTCGTTATCTTCCGTCATTTTCCGTCATTTTCCGTTGTTTTTTTTGTCTGAAGCCATCTTTCAAGACACTGGTACAACAGCAAAGAAAACCAATTGATTTAGCCCGCTTTGTCTGCTGGTGCGAT] [+] EMBL BX614223 [ CCGGTTCCACTGCACAGGGCAGCAGCAATCTACCACCACCGCCGCCACCTGTATTGGCACCGACCAATCCGTTCAAAGACACCGTTGACATCATTACGACACTGTAGGCAAACTAACGGGGCAAACGACGCTAGGGAGCTGGTATTACAATGCATGTGGATGGTCGCTTGTTGCTGTTGAAATGTAGGCTCTCGGTTTGGGTCGATCCGCCTGGAACACACCGGACCGAGGCCGGGCTTACACGACGATGAAGGCTTTTGCATGCAAATTTGATTCCATTTTGGCGTGACACTCAGGAACCGAACCGGTTTGATTATCCACCATAATCCGTGTCCTCTTTCCGTCCTGCTGTGTCGTTATCTTCCGTCATTTTCCGTCATTTTCCGTTGTTTTTTTTGTCTGAAGCCATCTTTCAAGACACTGGTACAACAGCAAAGAAAACCAATTGA ] consensusID : consensus_6252#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 786 fasta sequence [TGCCTGTTGATGGTCNGCTTGTNTGCTGTTCGAANTGTACGCGCTATCGGTTCTGGGTTGATCCGCCTGGAACACAACGGAACGGGGCCGGGCTTNNCACGACGATGAAGGCTATATTGCATGCAAATTTGATNNCCATTTTGGCGTGACACTCAGGAACCTGAACCGGTTTGATTATCCACCATAATCCGTGTACCTCTTTCCGTCCTGCTGTGTCGTATACTTCCGTCATTATTACCGTCATTTTCCGTTGTTTTTTTGTCTGAAGCCATCTTTCAAGGCACTGGTACAACAGCAAAGAAAACCAATTGATTTAGCCCGCTTTGTCTGCTGGTGCGATTTNATACGACGACATTCAACGCGAATTGCGAGACCCCAGCACCGATATCCATTCGCCCGTGTAATGTGATTTTAAGTGAGGATCAAACCCGAAGCTGGAAAAGTCAAATGTATTCGAAACGAACCGTTTCACTGGAAACGTGTCACACGGAACACCAAAAAAAACCGTTTGCGAGAAGCAGCGCAGGCAGGACGGGCATGTGTGATAATACATGTGACAGTGAAGACGGTGTGGTCCATNTTAAATTGCATAAAGTCCCGTGCTTGGCGAAGCGTTCCGAATTCCCNTTTAAATANATTTATCCCACTTCATCCATCCATCNATCATCAGCGGGAGATTGCTGGAGTGCGGTGCTGTTNAAGTATATTTATTGATTGNGACAATGGGGCTATCCTNTACGCAGCTGNNAACAAGGAAAATAATCTCATCAGAAATCTGTCGCTACC] [+] EMBL AL932794 [TGCCTGTTGATGGTCNGCTTGTNTGCTGTTCGAANTGTACGCGCTATCGGTTCTGGGTTGATCCGCCTGGAACACAACGGAACGGGGCCGGGCTTNNCACGACGATGAAGGCTATATTGCATGCAAATTTGATNNCCATTTTGGCGTGACACTCAGGAACCTGAACCGGTTTGATTATCCACCATAATCCGTGTACCTCTTTCCGTCCTGCTGTGTCGTATACTTCCGTCATTATTACCGTCATTTTCCGTTGTTTTTTTGTCTGAAGCCATCTTTCAAGGCACTGGTACAACAGCAAAGAAAACCAATTGATTTAGCCCGCTTTGTCTGCTGGTGCGATTTNATACGACGACATTCAACGCGAATTGCGAGACCCCAGCACCGATATCCATTCGCCCGTGTAATGTGATTTTAAGTGAGGATCAAACCCGAAGCTGGAAAAGTCAAATGTATTCGAAACGAACCGTTTCACTGGAAACGTGTCACACGGAACACCAAAAAAAACCGTTTGCGAGAAGCAGCGCAGGCAGGACGGGCATGTGTGATAATACATGTGACAGTGAAGACGGTGTGGTCCATNTTAAATTGCATAAAGTCCCGTGCTTGGCGAAGCGTTCCGAATTCCCNTTTAAATANATTTATCCCACTTCATCCATCCATCNATCATCAGCGGGAGATTGCTGGAGTGCGGTGCTGTTNAAGTATATTTATTGATTGNGACAATGGGGCTATCCTNTACGCAGCTGNNAACAAGGAAAATAATCTCATCAGAAATCTGTCGCTACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6252#0 CCGGCGAGTTTGAGAACATTTTGGTCGAGCTGATCGACAATCAGCGGTGGTCAGCGGCGA 60 consensus_6252#1 ------------------------------------------------------------ consensus_6252#0 TAAATCACGTAAAACAGCACAAACAAATGTCGAATCATTCTGCATCGAATTACAACCTTT 120 consensus_6252#1 ------------------------------------------------------------ consensus_6252#0 CTGGGGGTGCCAGCGGTAGTAGTGGCGGTGGCAGTGGTGTTGGTGGCATGATGTTCGCCT 180 consensus_6252#1 ------------------------------------------------------------ consensus_6252#0 CGGGTGGCGGTAACTGCAGCATTACTGGTGGCGGCGGCGTTGGCGATGGTCTGTTCGCCA 240 consensus_6252#1 ------------------------------------------------------------ consensus_6252#0 ATCTTGGCACGGAATTTAAACCCGTCGATGATTTATCGATCA--TATTGAACGTTTACGC 298 consensus_6252#1 ------------------TGCCTGTTGATGGTCNGCTTGTNTGCTGTTCGAANTGTACGC 42 ** ** **** * * * ** * * ***** consensus_6252#0 TC-ACCGGCTGACGAAGGATAGAAATGATGTGTTCATTGTTTCGCGTTCGGAGCTCGAGC 357 consensus_6252#1 GCTATCGGTTCTGGGTTGATCCGCCTG--GAACACAACGGAACGGGGCCGGGCTTNNCAC 100 * * *** * * *** ** * ** * ** * *** * * consensus_6252#0 TGAG-TGAAATCTATCAAATTCTCATGGAGAACCTGCTGCACGTGTCGTCAGCGCTATCC 416 consensus_6252#1 GACGATGAAGGCTAT----ATTGCATGCA-AATTTGATNNCCATTTTGGCGTGACACTCA 155 * **** **** * **** * ** ** * * * * * * * ** consensus_6252#0 AACATGGAAATCAGCATGAAAGCTAACACAAGTTCCAGCTCCTCGACCGTTACAACGATG 476 consensus_6252#1 GGAACCTGAACCGGTTTGATTATCCACCATAATCCGTGTACCTCTTTCCGTCCTGCTGTG 215 * ** * * *** ** * * * * **** * * * * ** consensus_6252#0 ACG-ACAATTCCAGCAGTAATTGGTACGGGCCCCAGCACCGGTCCAGGAAACGGCGGAAC 535 consensus_6252#1 TCGTATACTTCCGTCATTATTACCGTCATTTTCCGTTGTTTTTTTGTCTGAAGCCATCTT 275 ** * * **** ** ** * * ** * * * * consensus_6252#0 CGGAAATGGCCATTCAGGAGCACCGGGCAACGCAGCGGGCTCGTTAGCCGGTTCCACTGC 595 consensus_6252#1 TCAAGGCACTGGTACAACAGCA--AAGAAAACCAATTGAT---TTAGCCCGCTTTGTCTG 330 * * ** **** * ** ** * ****** * * consensus_6252#0 ACAGGGCAGCAGCAATCTACCACCACCGCCGCCACCTGTATTGGCACCGACCAATCCGTT 655 consensus_6252#1 CTGGTGCGATTTNATACGACGACATTCAACGCGAATTGCGA-GACCCCAGCACCGATATC 389 * ** * * ** ** * *** * ** * * ** * * consensus_6252#0 CAAAGACACCGTTGACATCATTACGACACTGTAGGCAAACTAACGGGGCAAACGACGCTA 715 consensus_6252#1 CATTCGCCCGTGTAATGTGATTTTAAGTGAGGATCAAACCCGAAGCTGGAAAAGTCA--A 447 ** * * * * * *** * * * ** * * * * *** * * * consensus_6252#0 GGGAGCTGGTATTACAATGCATGTGGATGGTCGCTTGTTGCTGTTGAAATGTAGGCTCTC 775 consensus_6252#1 ATGTATTCGAA--ACGAACCGTTTCACTGGAAACGTGTCACACGGAACACCAAAAAAAAC 505 * * * * ** * * * * *** * *** * * * * * consensus_6252#0 GGTTTGGGTCGATCCGCCTGGAACACACCGGACCGAGGCCGGGCTTACACGACGATGAAG 835 consensus_6252#1 CGTTTGCGAGAAGCAGCGCAGGCAGGACGGGCATGTGTGATAATACATGTGACAGTGAAG 565 ***** * * * ** * ** ** * * * *** ***** consensus_6252#0 GCTTTTGCATGCAAATTTGATTCCATTTTGGCGTGACACTCAGGAACCGAACCGGTTTGA 895 consensus_6252#1 ACGGTGTGGTCCATNTTAAATTGCATAAAGTCCCGTGCTTGGCGAAGCGTTCCGAATTCC 625 * * * ** ** *** *** * * * * *** ** *** ** consensus_6252#0 TTATCCACCATAAT----CCGTGTCCTCTTTCCGTCCTGCTGTGTCGTTATCTTCCGTCA 951 consensus_6252#1 CNTTTAAATANATTTATCCCACTTCATCCATCCATCNATCATCAGCGGGAGATTGC-TGG 684 * * * * * ** ** ** *** ** * ** * ** * * consensus_6252#0 TTTTCCGTCATTTTCCGTTGTTTTTTTTGTCTGAAGCCATCTTTCAAGACACTGGTACAA 1011 consensus_6252#1 AGTGCGGTGCTGTTNAAGTATATTTATTGATTGNGACAATGGGGCTATCCTNTA-CGCAG 743 * * ** * ** * * *** *** ** * ** * * * * ** consensus_6252#0 CAGCAAAGAAAACCAATTGATTTAGCCCGCTTTGTCTGCTGGTGCGAT 1059 consensus_6252#1 CTGNNAACAAGGA-AAATAATCTCATCAGAA--ATCTGTCGCTACC-- 786 * * ** ** ** * ** * * * **** * * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||