These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6260#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1197 fasta sequence [CCGCCCACGCGTCCGGGACAGTAGAGTTTACAGCTTTTTTTTTTCTAAGGTTTACTGCAGCGGCAATCACTGTGAACTTTGTGTGTAGAACTTGACTTTGTTAGATTTGCAACCCCTCGTGAGGAGGAGCAGGAGGAGGAGGAGGAGTAGTATTTTTACAACCCAATACCTTCTTAGCTAGACATAGGTGGCTACCGTTAATGTTACTCCTACACTAATGTAATGCACTGAAGCAGCTGTACGATCCTCGCGCTTGAGGTCAACCAGAAAGCGTCCGTCGCTAATTAGTACATTGCAGTGAAAGGTTGAGTGGTTAGTTAGTTTCTTTCTTTCCTCGTTTTGTTAAGCCTTAAACTTTGCTACATTGTTGTGCAGTGTGACGAAGAAGCAGAGCTGTGTCCGATTGAGGACATGATAGGTGGGAGTGCAAATGTGCAAACGGGGAGAGGGTGTAGTACACTCCCCGCAGCTCATTTGCTTGCTGCTTTGTTGTTAAACATTTAGCTTTACACACAAGGGTTAGCCGATTAGCTTAGCCGTTAGTGCAGTTGCGAGTTGCGAACGTAACCGCGCCTGAGCGATTTGGTTTCCTTGGGTCCCAAATCGCCCGGTCCAAAGAACGGGACGATTCAATCAGATACCAAATAACTTATTTTATAATCAACAATAACACATAGCAAACATCTACAGAGAGCACAGGATTACGCTTAGTCCTTATGTGCGCAAAAATGCAACTCCAGGCTGACAATGCGGGTAGGTTTTCGTGCACTAATCGAATGCAGAGAAGCATCCAATGCCTAAATGATGATATTATCGATAATCGCACGCATCCCCAATTTATAAACGAGACCTGCGACGTTGCTAAGAACAGCATGGTGATCAACTCCTCCGAACATGAATCTAATCACTTCCCCCACCAGTGAGGATTGTTGGGCCCATGTGCCGCCACGCGCTAGAAAAATCTAGTGTCTAGACTGCATCCACTGCTACGCACCATTGGTAGTAACCGCCCGTTGGTAGGTGGTGGTTACTACCACGGCACGGCTCTGAACATAATCTAAAACAGCGCATAATGGGGAACACTTGGGAACACTTACAACAGATAGTTAACCGCGGGAGCAAAGATAAGTAGCAGTAGTAGTGATAGCAGTAGCAGAGTAGTGATAGTAATATTGTACTAAAAATAGACATCTACAT] [+] EMBL BM620850 [CCGCCCACGCGTCCGGGACAGTAGAGTTTACAGCTTTTTTTTTTCTAAGGTTTACTGCAGCGGCAATCACTGTGAACTTTGTGTGTAGAACTTGACTTTGTTAGATTTGCAACCCCTCGTGAGGAGGAGCAGGAGGAGGAGGAGGAGTAGTATTTTTACAACCCAATACCTTCTTAGCTAGACATAGGTGGCTACCGTTAATGTTACTCCTACACTAATGTAATGCACTGAAGCAGCTGTACGATCCTCGCGCTTGAGGTCAACCAGAAAGCGTCCGTCGCTAATTAGTACATTGCAGTGAAAGGTTGAGTGGTTAGTTAGTTTCTTTCTTTCCTCGTTTTGTTAAGCCTTAAACTTTGCTACATTGTTGTGCAGTGTGACGAAGAAGCAGAGCTGTGTCCGATTGAGGACATGATAGGTGGGAGTGCAAATGTGCAAACGGGGAGAGGGTGTAGTACACTCCCCGCAGCTCATTTGCTTGCTGCTTTGTTGTTAAACATTTAGCTTTACACACAAGGGTTAGCCGATTAGCTTAGCCGTTAGTGCAGTTGCGAGTTGCGAACGTAACCGCGCCTGAGCGATTTGGTTTCCTTGGGTCCCAAATCGCCCGGTCCAAAGAACGGGACGATTCA ] [+] EMBL BM655025 [ ccgCAAGGGTTAGCCGATTAGCTTAGCCGTTAGTGCAGTTGCGAGTTGCGAACGTAACCGCGCCTGAGCGATTTGGTTTCCTTGGGTCCCAAATCGCCCGGTCAAAAGAACGGGACGATTCAATCAGATACCAAATAACTTATTTTATAATCAACAATAACACATAGCAAACATCTACAGAGAGCACAGGATTACGCTTAGTCCTTATGTGCGCAAAAATGCAACTCCAGGCTGACAATGCGGGTAGGTTTTCGTGCACTAATCGAATGCAGAGAAGCATCCAATGCCTAAATGATGATATTATCGATAATCGCACGCATCCCCAATTTATAAACGAGACCTGCGACGTTGCTAAGAACAGCATGGTGATCAACTCCTCCGAACATGAATCTAATCACTTCCCCCACCAGTGAGGATTGTTGGGCCCATGTGCCGCCACGCGCTAGAAAAATCTAGTGTCTAGACTGCATCCACTGCTACGCACCATTGGTAGTAACCGCCCGTTGGTAGGTGGTGGTTACTACCACGGCACGGCTCTGAACATAATCTAAAACAGCGCATAATGGGGAACACTTGGGAACACTTACAACAGATAGTTAACCGCGGGAGCAAAGATAAGTAGCAGTAGTAGTGATAGCAGTAGCAGAGTAGTGATAGTAATATTGTACTAAAAATAGACATCTACAT] consensusID : consensus_6260#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 827 fasta sequence [CAGATTGCCCAGGTTTAAAAGCAGAGCTGTGTCGATTGAGGACATTATAGGTGGGAGTGCAAATGTGCAAACGGGGAGAGGGTGTAGTACACTACCCCGCAGCTCATTTGCTTGCCTGCTTATGTATGTTAAACATATTAGCTTNTACACACAAGGGTTAGCCGATTAGCTATAGCCGTATAAGTAGCAGTTGCGAGTTGCAGAACTGTAACCTGGCCTGAGCGATATATGGTATATACCTTGGGTACCCAAATACGANCGGGTCAAAAGAGAACNGTGGAACCGATANNCGAATCAAGAATAACCAAATANCTCCTAATCTCTCGTATCNAATACCCNANCNANATNANACACGATTAAGACACAAAACNAATACTTAACCACGNCAGACGCCACCAAGCGCATATACACAGGCCTAATCAGNTACACCTATACATAGTCGCNGCNAAACAAACAANTAGCNAAAGATACCCAAGAGCCATTGGACACCNAAATTGGACAGAGGTAAANAAGTAAAAAAACGGGATATGGCCACCCTAACAACTTACCGACANACATTCGNCCCACCACCTANAACTNNCCAATTTACTCCAACANTTAAGAAACTAAAAACAATATGGAAANTCATCAATTNACATACTCATNCAACACCCAACTNCCCACAAATCACCAGACCACAAAATCAACCAANTTAAACNCACCCCCCCCACNAAAACTCAANNCACCANATNNCACANANACCCACACACACCANAACNCCNTTNNACACNCTAAANTCNCNCTATANATACCCCTACNACNACACTCCACACCCACACACCNACNCT] [+] EMBL AL695970 [CAGATTGCCCAGGTTTAAAAGCAGAGCTGTGTCGATTGAGGACATTATAGGTGGGAGTGCAAATGTGCAAACGGGGAGAGGGTGTAGTACACTACCCCGCAGCTCATTTGCTTGCCTGCTTATGTATGTTAAACATATTAGCTTNTACACACAAGGGTTAGCCGATTAGCTATAGCCGTATAAGTAGCAGTTGCGAGTTGCAGAACTGTAACCTGGCCTGAGCGATATATGGTATATACCTTGGGTACCCAAATACGANCGGGTCAAAAGAGAACNGTGGAACCGATANNCGAATCAAGAATAACCAAATANCTCCTAATCTCTCGTATCNAATACCCNANCNANATNANACACGATTAAGACACAAAACNAATACTTAACCACGNCAGACGCCACCAAGCGCATATACACAGGCCTAATCAGNTACACCTATACATAGTCGCNGCNAAACAAACAANTAGCNAAAGATACCCAAGAGCCATTGGACACCNAAATTGGACAGAGGTAAANAAGTAAAAAAACGGGATATGGCCACCCTAACAACTTACCGACANACATTCGNCCCACCACCTANAACTNNCCAATTTACTCCAACANTTAAGAAACTAAAAACAATATGGAAANTCATCAATTNACATACTCATNCAACACCCAACTNCCCACAAATCACCAGACCACAAAATCAACCAANTTAAACNCACCCCCCCCACNAAAACTCAANNCACCANATNNCACANANACCCACACACACCANAACNCCNTTNNACACNCTAAANTCNCNCTATANATACCCCTACNACNACACTCCACACCCACACACCNACNCT] consensusID : consensus_6260#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 566 fasta sequence [CCGAGGCTTAAATCTACAGAGAGCACAGGATTACGCTTAGTCCTTATGTGCGCAAAAATGCAACTCCAGGCTGACAATGCGGGTAGGTTTTCGTGCACTAATCGAATGCAGAGAAGCATCCAATGCCTAAATGATGATATTATCGATAATCGCACGCATCCCCAATTTATAAACGAGACCTGCGACGTTGCTAAGAACAGCATGGTGATCAACTCCTCCGAACATGAATCTAATCACTTCCCCCACAGTTGAGGATTGTTGGGCCCATGTGCCGCACGCGCTAGAAAAATCTAGTGTCTAGACTGGNATCCACTGCTACGCACCATTGGTAGTAACCGCCGTTGGTAGGTGGCTGGTTACTACCACGGCACGGCTCTGAACATAATCTAAAACAGCGCATAATCGGGGAACACTTGGGAACACTTACAACAGATAGTTAACCGCGGGAGCAAAGATAAGTAGCAGTAGTACGTGATAGCAGTAGCNGAGTAGTGATACGTAANTATNGTACTAANAAATAGACATCTACATGNTGAGGACGTCGATGTGACACGTGACTGGACATT] [+] EMBL AL694244 [CCGAGGCTTAAATCTACAGAGAGCACAGGATTACGCTTAGTCCTTATGTGCGCAAAAATGCAACTCCAGGCTGACAATGCGGGTAGGTTTTCGTGCACTAATCGAATGCAGAGAAGCATCCAATGCCTAAATGATGATATTATCGATAATCGCACGCATCCCCAATTTATAAACGAGACCTGCGACGTTGCTAAGAACAGCATGGTGATCAACTCCTCCGAACATGAATCTAATCACTTCCCCCACAGTTGAGGATTGTTGGGCCCATGTGCCGCACGCGCTAGAAAAATCTAGTGTCTAGACTGGNATCCACTGCTACGCACCATTGGTAGTAACCGCCGTTGGTAGGTGGCTGGTTACTACCACGGCACGGCTCTGAACATAATCTAAAACAGCGCATAATCGGGGAACACTTGGGAACACTTACAACAGATAGTTAACCGCGGGAGCAAAGATAAGTAGCAGTAGTACGTGATAGCAGTAGCNGAGTAGTGATACGTAANTATNGTACTAANAAATAGACATCTACATGNTGAGGACGTCGATGTGACACGTGACTGGACATT] [+] EMBL BX618054 [ AGAAGCATCCAACGCCTAAATGATGATATGATCGATAATCGCACGCATCCCCAATTTATAAACGAGACCCGCGACGTCGCTAAGAACAGCAGGGTGATCAACTCCCCCGAACATGAATCTAATCACTTCCCC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6260#0 CCGCCCACGCGTCCGGGACAGTAGAGTTTACAGCTTTTTTTTTTCTAAGGTTTACTGCAG 60 consensus_6260#2 ------------------------------------------------------------ consensus_6260#1 ------------------------------------------------------------ consensus_6260#0 CGGCAATCACTGTGAACTTTGTGTGTAGAACTTGACTTTGTTAGATTTGCAACCCCTCGT 120 consensus_6260#2 ------------------------------------------------------------ consensus_6260#1 ------------------------------------------------------------ consensus_6260#0 GAGGAGGAGCAGGAGGAGGAGGAGGAGTAGTATTTTTACAACCCAATACCTTCTTAGCTA 180 consensus_6260#2 ------------------------------------------------------------ consensus_6260#1 ------------------------------------------------------------ consensus_6260#0 GACATAGGTGGCTACCGTTAATGTTACTCCTACACTAATGTAATGCACTGAAGCAGCTGT 240 consensus_6260#2 ------------------------------------------------------------ consensus_6260#1 ------------------------------------------------------------ consensus_6260#0 ACGATCCTCGCGCTTGAGGTCAACCAGAAAGCGTCCGTCGCTAATTAGTACATTGCAGTG 300 consensus_6260#2 ------------------------------------------------------------ consensus_6260#1 ------------------------------------------------------------ consensus_6260#0 AAAGGTTGAGTGGTTAGTTAGTTTCTTTCTTTCCTCGTTTTGTTAAGCCTTAAACTTTGC 360 consensus_6260#2 ------------------------------------------------------------ consensus_6260#1 ------------------------------------------------------------ consensus_6260#0 TACATTGTTGTGCAGTGTGACGAAGAAGCAGAGCTGTGTCCGATTGAGGACATGATAGGT 420 consensus_6260#2 ------------------------------------------------------------ consensus_6260#1 ------------------------------------------------------------ consensus_6260#0 GGGAGTGCAAATGTGCAAACGGGGAGAGGGTGTAGTACACTCCCCGCAGCTCATTTGCTT 480 consensus_6260#2 ------------------------------------------------------------ consensus_6260#1 --CAGATTGCCCAGGTTTAAAAGCAGAGCTGTGTCGATTGAGGACATTATAGGTGGGAGT 58 consensus_6260#0 GCTGCTTTGTTGTTAAACATTTAGCTTTACACACAAGGGT-TAGCCGATTAGCTTAGCCG 539 consensus_6260#2 ------------------------------------------------------------ consensus_6260#1 GCAAATGTGCAAACGGGGAGAGGGTGTAGTACACTACCCCGCAGCTCATTTGCTTGCCTG 118 consensus_6260#0 TTAGTGCAGTTGCGAGTTGCGAACGTAACCGCGCCTGAGCGATTTGGTTTCCTTGGGTCC 599 consensus_6260#2 ------------------------------------------------------------ consensus_6260#1 CTTATGTATGTTAAACATATTAGCTTNTACACACAAGGGTTAGCCGATTAGCTATAGCCG 178 consensus_6260#0 CAAATCGCCCGGTCCAAAGAACGGGACGATTCAATCAGATACCAAATAACTTATTTTATA 659 consensus_6260#2 ------------------------------------------------------------ consensus_6260#1 TATAAGTAGCAGTT--GCGAGTTGCAGAACTGTAACCTGGCCTGAGCGATATATGGTATA 236 consensus_6260#0 ATCAACAATAACACATA-GCAAACATCTACAGAGAGCACAGGATTACGCTTAGTCCTTAT 718 consensus_6260#2 ------------CCGAG-GCTTAAATCTACAGAGAGCACAGGATTACGCTTAGTCCTTAT 47 consensus_6260#1 TACCTTGGGTACCCAAATACGANCGGGTCAAAAGAGAACNGTGGAACCGATANNCGAATC 296 * * * * **** ** * ** ** * consensus_6260#0 GTGCGCAAAAATGCAACTCC-AGGCTGACAATGCGGGTAGGTTTTCGTGCACTAATCGAA 777 consensus_6260#2 GTGCGCAAAAATGCAACTCC-AGGCTGACAATGCGGGTAGGTTTTCGTGCACTAATCGAA 106 consensus_6260#1 AAGAATAACCAAATANCTCCTAATCTCTCGTATCNAATACCCNANCNANATNANACACGA 356 * ** * * **** * ** * * ** * * * consensus_6260#0 TGCAGAGAAGCATCCAATGCCTAAATGATGATATTATCGATAATCGCACGCATCCCCAAT 837 consensus_6260#2 TGCAGAGAAGCATCCAATGCCTAAATGATGATATTATCGATAATCGCACGCATCCCCAAT 166 consensus_6260#1 TTAAGACACAAAACNAATACTTAACCACGNCAGACGCCACCAAGCGCATATACACAGGCC 416 * *** * * * *** * *** * ** **** * * consensus_6260#0 TTATAAACGAGACCTG--CGACGTTGCTA-AGAACAGCATGGTGATCAACTCCTCCGAAC 894 consensus_6260#2 TTATAAACGAGACCTG--CGACGTTGCTA-AGAACAGCATGGTGATCAACTCCTCCGAAC 223 consensus_6260#1 TAATCAGNTACACCTATACATAGTCGCNGCNAAACAAACAANTAGCNAAAGATACCCAAG 476 * ** * * **** * ** ** **** * ** ** ** consensus_6260#0 ATGAATCTAATCACTTCCCCC-ACCAGTGAGGATTGTTGGGCCCATGTGCCGCCACGCGC 953 consensus_6260#2 ATGAATCTAATCACTTCCCCC-ACAGTTGAGGATTGTTGGGCCCATGTGCCGC-ACGCGC 281 consensus_6260#1 AGCCATTGGACACCNAAATTGGACAGAGGTAAANAAGTAAAAAAACGGGATATGGC-CAC 535 * ** * * ** * * * * * * * * * consensus_6260#0 TAGAAAAATCTAGTGTCTAGACTG-CATCCACTGCTACGCACCATTGGTAGTAACCGCCC 1012 consensus_6260#2 TAGAAAAATCTAGTGTCTAGACTGGNATCCACTGCTACGCACCATTGGTAGTAACCGCC- 340 consensus_6260#1 CCTAACAACTTACCGACANACATTCGNCCCACCACCTANAACTNNC--CAATTTACTCCA 593 ** ** ** * * * **** * ** * * * ** consensus_6260#0 GTTGGTAGGTGG-TGGTTAC--TACCACGGCACGGCTCTGAACATAATC-TAAAACAGCG 1068 consensus_6260#2 GTTGGTAGGTGGCTGGTTAC--TACCACGGCACGGCTCTGAACATAATC-TAAAACAGCG 397 consensus_6260#1 ACANTTAAGAAACTAAAAACAATATGGAAANTCATCAATTNACATACTCATNCAACACCC 653 ** * * ** ** * * * ***** ** * **** * consensus_6260#0 CATAAT-GGGGAA-CACTTGGGAACACTTACAACAGAT---AGTTAACCGCGGGAGCAAA 1123 consensus_6260#2 CATAATCGGGGAA-CACTTGGGAACACTTACAACAGAT---AGTTAACCGCGGGAGCAAA 453 consensus_6260#1 AACTNCCCACAAATCACCAGACCACAAAATCAACCAANTTAAACNCACCCCCCCCACNAA 713 * ** *** * *** **** * * *** * * ** consensus_6260#0 GATAAGTAGCAGTAGTA-GTGATAGCAGTAGCAGAGTAGTGATA-GTAAT-AT-TGTACT 1179 consensus_6260#2 GATAAGTAGCAGTAGTACGTGATAGCAGTAGCNGAGTAGTGATACGTAANTAT-NGTACT 512 consensus_6260#1 AACTCAANNCACCAN-ATNNCACANANACCCACACACACCANAACNCCNTTNNACACNCT 772 * ** * * * * * * ** consensus_6260#0 AAAAA-TAGACATCTACAT------------------------------------ 1197 consensus_6260#2 AANAAATAGACATCTACATGNTGAGGACGTCGATGTG-ACACGTGACTGGACATT 566 consensus_6260#1 AAANTCNCNCTATANATACCCCTACNACNACACTCCACACCCACACACCNACNCT 827 ** ** * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||