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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6264#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1230 fasta sequence
[CCGGTTGGAACTGTTTCAAGGAAGGTTCTAGCTTGAAAACTCTCAAGCGAGAAGTGCTAATTATTTTGGGCAGTTATTCGTAGTGAAATTTAAATTCTTGTTAAACCTCTTTCTTTACGTTCCAGCTGTGTCTGGAAGGAGAACGTGATACAGGGGTTTTCTTTTAAATTAAGGAGTGTTTCCCGCCTT-GATTGATTGTTGATTACTTCCAAATTCATTCTAACTGATTGACACCAGCGAAAGGATACAAAATGAATCGCCAAACGTTTCGTGGTGGCATGCAACGCGCCAATCAGCGCAAGATGAACAAACCGATGAACAAAAAGCGTCAGAAAGGATCGAAACCGGTAATAGACGAAATAGAGGTAGCGGGAAAGAATCTACGCGATGAAGCGTTAAAGTACATGAAGGTTCGAAACTACACGAAAGCGTTGGGATTGTATGACCAGGCACTGGAGATGAACAACAATGATCAGAATGCCCTGGTTGCCAGGAGCCGCTGTTTCTTGCAGCTTGGCGAACCGGGCAAAGCTTTGCAGGATGCGGAGACGGCTCTCGTGCTGGACAAAAACAACATCCGCGCGATTTACCAGAAGGCGGAAGCGCTCTACTATCTGGGCCAGTTTGAGCACAGTTTGATGTTTTTTCACCGTGGTTTGCGCTTGCGTCCGGAGTTGGCTAGCTTTCGGTTGGGTGTTTAAAAAACGCAGGAAGCGATCGAGAATACTATCGGAAATAATACGAAAAACCAGCCGCAAAAGAAACCGACCAAGGTGGAAAAGCCCAAGACCGCCAAACGCAACCAGCTGTCGCGGGAAGAGCTGGAAAAGCGTGCCTCCCGCCGACTGCTGGGTGATCTGTACATTGACAAGGAGTATCTGGAGAACCTGATCAAGCACCCTGATCTGCGCAAGGCGGACACCAACACGGAGGGTGTGTCGGAGTACGCTAAGGACGCGATCAACTTCCTGAACAATAGGCAGGAGTTTTGGAGACAGCAGAAACCATGCACCAGTTTGAATGCGAAGAAAATTAACGGTGCAAACGGTATGCTTCCGCGCTGGTTGTAAACCTGCCTAGCGGTTTCCCAATAGAAACCGAACAGCACAGTAGAGGAACAATTTAGAAGGTAGTACACGACCGGTGTGATAAGGTAGTGAAAGAAGCATTCCCATTGTTCCGTCCTGTTACGTTGGATTCTAACCGTTTTTTCAGCAATGTTTACCTTAA]
[+] EMBL BM657062 [CCGGTTGGAACTGTTTCAAGGAAGGTTCTAGCTTGAAAACTCTCAAGCGAGAAGTGCTAATTATTTTGGGCAGTTATTCGTAGTGAAATTTAAATTCTTGTTAAACCTCTTTCTTTACGTTCCAGCTGTGTCTGGAAGGAGAACGTGATACAGGGGTTTTCTTTTAAATTAAGGAGTGTTTCCCGCCTT GATTGATTGTTGATTACTTCCAAATTCATTCTAACTGATTGACACCAGCGAAAGGATACAAAATGAATCGCCAAACGTTTCGTGGTGGCATGCAACGCGCCAATCAGCGCAAGATGAACAAACCGATGAACAAAAAGCGTCAGAAAGGATCGAAACCGGTAATAGACGAAATAGAGGTAGCGGGAAAGAATCTACGCGATGAAGCGTTAAAGTACATGAAGGTTCGAAACTACACGAAAGCGTTGGGATTGTATGACCAGGCACTGGAGATGAACAACAATGATCAGAATGCCCTGGTTGCCAGGAGCCGCTGTTTCTTGCAGCTTGGCGAACCGGGCAAAGCTTTGCAGGATGCGGAGACGGCTCTCGTGCTGGACAAAAACAACATCCGCGCGATTTAC ]
[+] EMBL AL694305 [ agggTTNAAGGAAGG TCTAGC TGAAAACTCTC AGCGAGAAGTGCTAATTA TTTGGGCAGTTTATCGTAGTGAAATTTAAATTCTTGTTAAACCTCTTTCTTTACGTTCCAGCTGTGTCTGGAAGGAGAACGTGATACAGGGGTTTTCTTTTAAATTAAGGAGTGTTTCCCGCCTTGGATTGATTGTTGACTACTTCCAAATTCATTCTGACTGATTGACACCAGCGAAAGGATACAAAATGAATCGCCAAACGTTT ]
[+] EMBL BX612788 [ GCCCTGGTTGCCAGGAGCCGCTGTTTCTTGCAGCTTGGCGAACCGGGCAAAGCTTTGCAGGATGCGGAGACGGCTCTCGTGCTGGACAAAAACAACATCCGCGCGATTTACCAGAAGGCGGAAGCGCTCTACTATCTGGGCCAGTTTGAGCACAGTTTGATGTTTTTTCACCGTGGTTTGCGCTTGCGTCCGGAGTTGGCTAGCTTTCGGTTGGGTGTTTAAAAAACGCAGGAAGCGATCGAGAATACTATCGGAAATAATACGAAAAACCAGCCGCAAAAGAAACCGACCAAGGTGGAAAAGCCCAAGACCGCCAAACGCAACCAGCTGTCGCGGGAAGAGCTGGAAAAGCGTGCCTCCCGCCGACTGCTGGGTGATCTGTACATTGACAAGGAGTATCTGGAGAACCTGATCAAGCACCCTGATCTGCGCAAGGCGGACACCAACACGGAGGGTGTGTCGGAGTACGCTAAGGACGCGATCAACTTCCTGAACAATAGGCAGGAGTTTTGGAGACAGCAGAAACCATGCACCAGTTTGAATGCGAAGAAAATTAACGGTGCAAACGGTATGCTTCCGCGCTGGTTGTAAACCTGCCTAGCGGTTTCCCAATAGAAACCGAACAGCACAGTAGAGGAACAATTTAGAAGGTAGTACACGACCGGTGTGATAAGGTAGTGAAAGAAGCATTCCCATTGTTCCGTCCTGTTACGTTGGATTCTAACCGTTTTTTCAGCAATGTTTA ]
[+] EMBL BX615632 [ AACGCAGGAAGCGATCGAGAATACTATCGGAAATAATACGAAAAACCAGCCGCAAAAGAAACCGACCAAGGTGGAAAAGCCCAAGACCGCCAAACGCAACCAGCTGTCGCGGGAAGAGCTGGAAAAGCGTGCCTCCCGCCGACTGCTGGGCGATCTGTACATTGACAAGGAGTATCTGGAGAACCTGATCAAGCACCCTGATCTGCGCAAGGCGGACACCAACACGGAGGGTGTGTCGGAGTACGCTAAGGATGCGATCAACTTCCTGAACAATAGGCAGGAGTTTTGGAGACAGCAGAAACCATGCACCAGTTTGAATGCGAAGAAAATTAACGGTGCAAACGGTATGCTTCCGCGCTGGTTGTAAACCTGTCTGGCGGAGTCCCAATAGAAACCGAACAGCACAGTAGTGGAACAATTTAGAAGGTAGTACACGACCGGTGTGATAAGGTAGTGAAAGAAGCATTCCCATTGTTCCGTCCTGTTACGTTGGATTCTAAACGTTTTTTCAGCAATGTTTACCTTAA]
consensusID : consensus_6264#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 730 fasta sequence
[CCGTACGTTCACCATCTGTAACGTTGTAAGTCGATCGATGTTTGGTGTTGCAGCGTCGGTGTTTGGGGGAGCTGGAGTGAGCTGTTTTTGTGAAGAATAAGAGAATAAATGTTTCTCCAAATTTGAGGCAGTACCTCAAAAAGGTTCTAAAGTTGACAAGAGCATTTTGAGATGTTTTAAAAAGTAATAGTGTTGAGTGTATATGTGTGATAAAGTGATTCATGTGAGGAATGTTCATAAAGTGATAGTGACGCAAAGTAATTGGTGCGCGACTACACAAACCCCAAGGATTACTCATCGCTCAACCTAAAATGAAGTCTTCAACCTGTTAGTTGTACTCTCCCGCTTGCCTATCTCCAGCAGCTCTTCCAACGCAACACCCTAGTCCCTCGAAACGCAACGCGCCAATCAGCGCAAGATGAACAAACCGATGAACAAAAAGCGTCAGAAAGGATCGAAACCGGTAATAGACGAAATAGAGGTAGCGGGAAAGAATCTACGCGATGAAGCGTTAAAGTACATGAAGGTTCGAAACTACACGAAAGCGTTGGGATTGTATGACCAGGCACTGGAGATGAACAACAATGATCNGAATGCCCCTGGTTGCCAGGAGCCGCTGTTTCTTGCAGCTTGGCGAACCGGGCAAAGCTTTGCAGGATGCGGAGACGGCTCTCGTGCTGGACAAAAACAACATCCGCGCGATTTACCAGAAGGNGGAAGCGCTCTACTA]
[+] EMBL BX626387 [CCGTACGTTCACCATCTGTAACGTTGTAAGTCGATCGATGTTTGGTGTTGCAGCGTCGGTGTTTGGGGGAGCTGGAGTGAGCTGTTTTTGTGAAGAATAAGAGAATAAATGTTTCTCCAAATTTGAGGCAGTACCTCAAAAAGGTTCTAAAGTTGACAAGAGCATTTTGAGATGTTTTAAAAAGTAATAGTGTTGAGTGTATATGTGTGATAAAGTGATTCATGTGAGGAATGTTCATAAAGTGATAGTGACGCAAAGTAATTGGTGCGCGACTACACAAACCCCAAGGATTACTCATCGCTCAACCTAAAATGAAGTCTTCAACCTGTTAGTTGTACTCTCCCGCTTGCCTATCTCCAGCAGCTCTTCCAACGCAACACCCTAGTCCCTCGAAACGCAACGCGCCAATCAGCGCAAGATGAACAAACCGATGAACAAAAAGCGTCAGAAAGGATCGAAACCGGTAATAGACGAAATAGAGGTAGCGGGAAAGAATCTACGCGATGAAGCGTTAAAGTACATGAAGGTTCGAAACTACACGAAAGCGTTGGGATTGTATGACCAGGCACTGGAGATGAACAACAATGATCNGAATGCCCCTGGTTGCCAGGAGCCGCTGTTTCTTGCAGCTTGGCGAACCGGGCAAAGCTTTGCAGGATGCGGAGACGGCTCTCGTGCTGGACAAAAACAACATCCGCGCGATTTACCAGAAGGNGGAAGCGCTCTACTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6264#0 ------------------------------------------------------------
consensus_6264#1 CCGTACGTTCACCATCTGTAACGTTGTAAGTCGATCGATGTTTGGTGTTGCAGCGTCGGT 60
consensus_6264#0 ----------------------------------------CCGGTTGGAACTGTTTCAAG 20
consensus_6264#1 GTTTGGGGGAGCTGGAGTGAGCTGTTTTTGTGAAGAATAAGAGAATAAATGTTTCTCCAA 120
* * * * * ** *
consensus_6264#0 G---AAGGTTCTAGCTTGAAAA--CTCTCAAGC------GAGAAGTGCTAATTATTTTGG 69
consensus_6264#1 ATTTGAGGCAGTACCTCAAAAAGGTTCTAAAGTTGACAAGAGCATTTTGAGATGTTTTAA 180
*** ** ** **** *** *** *** * * * * ****
consensus_6264#0 GCAGTTATTCGTAGTGAAATTTAAATTCTTGTTAAACCTCTTTCTTT-----ACGTTCCA 124
consensus_6264#1 AAAGTAAT--AGTGTTGAGTGTATATGTGTGATAAAGTGATTCATGTGAGGAATGTTCAT 238
*** ** ** * * ** ** ** **** ** * * * ****
consensus_6264#0 GCTGTGTCTGGAAGGAGAACGTGATACAGGGGTTTTCTTTTAAATT--AAGGAGTGTTTC 182
consensus_6264#1 AAAGTGATAGTGACGCAAA-GTAATTGGTGCGCGACTACACAAACCCCAAGGATTACTCA 297
*** * * * ** ** ** * * *** ***** * *
consensus_6264#0 CCGCCTTGATTGATT----GTTGATTACTTCCAAATTCATTCTAACTGATTGAC-ACCAG 237
consensus_6264#1 TCGCTCAACCTAAAATGAAGTCTTCAACCTGTTAGTTGTACTCTCCCGCTTGCCTATCTC 357
*** * * ** ** * * ** * * *** * * *
consensus_6264#0 CGAAAGGATACAAAATGAATCGCCAAACGTTTCGTGGTGGCATGCAACGCGCCAATCAGC 297
consensus_6264#1 CAGCAGCTCTTCCAACGCAACACCCTA-GTCCCTCGA---AACGCAACGCGCCAATCAGC 413
* ** ** * * * ** * ** * * * *****************
consensus_6264#0 GCAAGATGAACAAACCGATGAACAAAAAGCGTCAGAAAGGATCGAAACCGGTAATAGACG 357
consensus_6264#1 GCAAGATGAACAAACCGATGAACAAAAAGCGTCAGAAAGGATCGAAACCGGTAATAGACG 473
************************************************************
consensus_6264#0 AAATAGAGGTAGCGGGAAAGAATCTACGCGATGAAGCGTTAAAGTACATGAAGGTTCGAA 417
consensus_6264#1 AAATAGAGGTAGCGGGAAAGAATCTACGCGATGAAGCGTTAAAGTACATGAAGGTTCGAA 533
************************************************************
consensus_6264#0 ACTACACGAAAGCGTTGGGATTGTATGACCAGGCACTGGAGATGAACAACAATGATCAGA 477
consensus_6264#1 ACTACACGAAAGCGTTGGGATTGTATGACCAGGCACTGGAGATGAACAACAATGATCNGA 593
********************************************************* **
consensus_6264#0 ATGCCC-TGGTTGCCAGGAGCCGCTGTTTCTTGCAGCTTGGCGAACCGGGCAAAGCTTTG 536
consensus_6264#1 ATGCCCCTGGTTGCCAGGAGCCGCTGTTTCTTGCAGCTTGGCGAACCGGGCAAAGCTTTG 653
****** *****************************************************
consensus_6264#0 CAGGATGCGGAGACGGCTCTCGTGCTGGACAAAAACAACATCCGCGCGATTTACCAGAAG 596
consensus_6264#1 CAGGATGCGGAGACGGCTCTCGTGCTGGACAAAAACAACATCCGCGCGATTTACCAGAAG 713
************************************************************
consensus_6264#0 GCGGAAGCGCTCTACTATCTGGGCCAGTTTGAGCACAGTTTGATGTTTTTTCACCGTGGT 656
consensus_6264#1 GNGGAAGCGCTCTACTA------------------------------------------- 730
* ***************
consensus_6264#0 TTGCGCTTGCGTCCGGAGTTGGCTAGCTTTCGGTTGGGTGTTTAAAAAACGCAGGAAGCG 716
consensus_6264#1 ------------------------------------------------------------
consensus_6264#0 ATCGAGAATACTATCGGAAATAATACGAAAAACCAGCCGCAAAAGAAACCGACCAAGGTG 776
consensus_6264#1 ------------------------------------------------------------
consensus_6264#0 GAAAAGCCCAAGACCGCCAAACGCAACCAGCTGTCGCGGGAAGAGCTGGAAAAGCGTGCC 836
consensus_6264#1 ------------------------------------------------------------
consensus_6264#0 TCCCGCCGACTGCTGGGTGATCTGTACATTGACAAGGAGTATCTGGAGAACCTGATCAAG 896
consensus_6264#1 ------------------------------------------------------------
consensus_6264#0 CACCCTGATCTGCGCAAGGCGGACACCAACACGGAGGGTGTGTCGGAGTACGCTAAGGAC 956
consensus_6264#1 ------------------------------------------------------------
consensus_6264#0 GCGATCAACTTCCTGAACAATAGGCAGGAGTTTTGGAGACAGCAGAAACCATGCACCAGT 1016
consensus_6264#1 ------------------------------------------------------------
consensus_6264#0 TTGAATGCGAAGAAAATTAACGGTGCAAACGGTATGCTTCCGCGCTGGTTGTAAACCTGC 1076
consensus_6264#1 ------------------------------------------------------------
consensus_6264#0 CTAGCGGTTTCCCAATAGAAACCGAACAGCACAGTAGAGGAACAATTTAGAAGGTAGTAC 1136
consensus_6264#1 ------------------------------------------------------------
consensus_6264#0 ACGACCGGTGTGATAAGGTAGTGAAAGAAGCATTCCCATTGTTCCGTCCTGTTACGTTGG 1196
consensus_6264#1 ------------------------------------------------------------
consensus_6264#0 ATTCTAACCGTTTTTTCAGCAATGTTTACCTTAA 1230
consensus_6264#1 ----------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||