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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6265#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1479 fasta sequence
[CCGCATTTTCTCGCTGCAATAGATATCGCCAGGTAACTGAATGTTACTGTTACTGTGAACATAAATAAAACGACATAGGAGGACATTCCTCTTGCAGCCCGTGTTCGCCATGGCGTCAGTGAAGGTGGAAAATAGTTCCAGGATCGTTGCCAACTCTCCACGGGATCATCCACGGTGCGATGTGTGTCTGCGCTGGGAAAGTGTTTGCTTCGGCAGATCGGATCCCATCTTCACTGGGAAAGATGTGTTGGCCATGGTAACGCAGTATCTCGACATGAACATCACCCTAACACTCGTCTGCGAACGCTGCTGGAGTAGATTGAAGGAGTTCGATGAGTTCTACCGGATGGTAAGCGAGCAGCACACCAGCAAAGCGGATCTGCGGCCCCCAGACCGGAAGGAAGCTGACCCGGTCGAACAGCGCGTGGAGGGAGTCGTTTATGGAATGGAATTTGTCGACATAAAGTACGAACCGCTGGGTGAAGACGCGAATGTAACGATAAAAGAGGAGAAGGAGGAGGAAGCGGAGGAGCATGAGAGAGAACCACTTCCGGACAGTGACGACTGTGACAAGCTGTTGCCCACCCAGTCGATGGAGTTGGACGATGAGGAACGCCTGGCGGATGACGATACGAACTCGTTGTCCTCCGACGATAGTGACGATTCCTCGGTG-CCGGATCGAGTGAAGCGCGGCGGCAAAGCATCGGCCATCGGCAAGAAAGAGCCCAAGGTGGATAAGGAGATACTGGAGTTTTACCAGCGGCTGGTGTGCGAGATTTGTGATGCGGACGGATGCTGGCCGGCGAACCGTCGATCGAGTACAGCAATCTGAGGGAGCTGAACAAGCACATGCG-AAAG-GTGCACGA-GCAGGTCGGCGCTACGCCATCAAGTGTCCGATGTGTGACAAAAAGTTCCGCTATCGGGCGAACTGGCTCGAGCATCGGGAGTTGTATCAGAATCCGGACCGGTTCCGGTGCGTGGTGTGCGAGGAGGTGCACCAGAACATGGCGGACACATGAAGAACAAGCACCAGGAGCGCACTTACTGCTGCGAGGAGTGTGGCAAGCGGTTCCCGTTCAAGGCTCGGCTTACGGCGCACGTGAAGAAAATGCACACCTCGAAGGATGTCGTCTGTGACCAGTGTCAGAAAAGCTTCAGCAGATACACGATCGAGGACCACAAGCGGGCAGTTCACGAATCGCGCTACATCTGCGAACACTGTTCGCGCACGTTCAAGTCGCGTCTTGCCCTCACGCAACACATGGAGGAACACGTGGAGGGATTGCGGAAGACGGTTTCCGCCACCTGCGAAAAGTGTGGCGTAGTGCTGCGGGACAAGTACACGCTGCAGACGCACATCAAGCGCATGCACACGGAACATCCGCCCGCCAGCTGCGGCACATGCGGGAGGGTGTTCAAGTCGAAGCACAATCTCAACGCGCCCCTGGCCAACGTGTGCACAAAAAAAAAAGTTCCCGT]
[+] EMBL BM604552 [CCGCATTTTCTCGCTGCAATAGATATCGCCAGGTAACTGAATGTTACTGTTACTGTGAACATAAATAAAACGACATAGGAGGACATTCCTCTTGCAGCCCGTGTTCGCCATGGCGTCAGTGAAGGTGGAAAATAGTTCCAGGATCGTTGCCAACTCTCCACGGGATCATCCACGGTGCGATGTGTGTCTGCGCTGGGAAAGTGTTTGCTTCGGCAGATCGGATCCCATCTTCACTGGGAAAGATGTGTTGGCCATGGTAACGCAGTATCTCGACATGAACATCACCCTAACACTCGTCTGCGAACGCTGCTGGAGTAGATTGAAGGAGTTCGATGAGTTCTACCGGATGGTAAGCGAGCAGCACACCAGCAAAGCGGATCTGCGGCCCCCAGACCGGAAGGAAGCTGACCCGGTCGAACAGCGCGTGGAGGGAGTCGTTTATGGAATGGAATTTGTCGACATAAAGTACGAACCGCTGGGTGAAGACGCGAATGTAACGATAAAAGAGGAGAAGGAGGAGGAAGCGGAGGAGCATGAGAGAGAACCACTTCCGGACAGTGACGACTGTGACAAGCTGTTGCCCACCCAGTCGATGGAGTTGGACGATGAGGAACGCCTGGCGGATGACGATACGAACTCGTTGTCCTCCGACGATAGTGACGATTCCTCGGTGCCCGGATCGAGTGAAGCGCGGCG ]
[+] EMBL CNS08YH2 [ CTGCGAACGCTGCTGGAGTAGATTGAAGGAGTTCGATGAGTTCTACCGGATGGTAAGCGAGCAGCACACCAGCAAAGCGGATCTGCGGCCCCCAGACCGGAAGGAAGCTGACCCGGTCGAACAGCGCGTGGAGGGAGTCGTTTATGGAATGGAATTTGTCGACATAAAGTACGAACCGCTGGGTGAAGACGCGAATGTAACGATAAAAGAGGAGAAGGAGGAGGAAGCGGAGGAGCATGAGAGAGAACCACTTCCGGACAGTGACGACTGTGACAAGCTGTTGCCCACCCAGTCGATGGAGTTGGACGATGAGGAACGCCTGGCGGATGACGATACGAACTTGTTGTCCTCCGACGATAGTGACGATTCCTCGGTG CCGGATCGAGTGAAGCGCGGCGGCAAAGCATCGGCCATCGGCAAGAAAGAGCCCAAGGTGGATAAGGAGATACTGGAGTTTTACCAGCGGCTGGTGTGCGAGATTTGTGATGCGGACGGATGCTGGCCGGCGAACCGTCGATCGAGTACAGCAATCTGAGGGAGCTGAACAAGCACATGCG AAAG GTGCACGA GCAGGTCGGCGCTACGCCATCAAGTGTCCGATGTGTGACAAAAAGTTCCGCTATCGGGCGAACTGGCTCGAGCATCGGGAGTTGTATCAGAATCCGGACCGGTTCCGGTGCGTGGTGTGCGAGGAGGTGCACCAGAACATGGCGGACACATGAAGAACAAGCACCAGGAGCGCACTTACTGCTGCGAGGAGTGTGGCAAGCGGTTCCCGTTCAAGGCTCGGCTTACGGCGCACGTGAAGAAAATGCACACCTCGAAGGATGTCGTCTGTGACCAGTGTCAGAAAAGCTTCAGCAGATACACGATCGAGGACCACAAGCGGGCAGTTCACGAATCGCGCTACATCTGCGAACACTGTTCGCGCACGTTCAAGTCGCGTCTTGCCCTCACGCAACACATGGAGGAACACGTGGAGGGA ]
[+] EMBL CNS08NAW [ AACGCCTGGCGGATGACGATACGAACTCGTTGTCCTCCGACGATAGTGACGATTCCGCGGGG CCGGATCGAGTGAAGCGCGGCGGCAAAGCATCGGCCATCGGCAAGAAAGAGCCCAAGGTGGATAAGGAGATACTGGAGTTTTACCAGCGGCTGGTGTGCGAGATTTGTGATGCGGACGGATGCTGGCCGGCGAACCGTCGATCGAGTACAGCAATCTGAGGGAGCTGAACAAGCACATGCGCAAAGCGTGCACGAGGCAGGTC ]
[-] EMBL CNS08NAX [ aatttgtACCTCGAAGGATGTCGTCTGTGACCAGTGTCAGAAAAGCTTCAGCAGATACACGATCGAGGACCACAAGCGGGCAGTTCAAGAATCGCGCTACATCTGCGAACACTGTCCGCGCACGTTCAAGTCGCGTCTTGCCCTCACGCAACACATGGAGGAACACGTGGAGGGATTGCGGAAGACGGTTTCCGCCACCTGCGAAAAGTGTGGCGTAGTGCTGCGGGACAAGTACACGCTGCAGACGCACATCAAGCGCATGCACACGGAACATCCGCCCGCCAGCTGCGGCACATGCGGGAGGGTGTTCAAGTCGAAGCACAATCTCAACGCGCCCCTGGCCAACGTGTGCACAAAAAAAAAAGTTCCCGT]
consensusID : consensus_6265#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 869 fasta sequence
[AAGTTCCGCTTTCAAGGCGAAGCAACTCGAGCATCGGGACATGCATCAGAATCCGGACCGGTTCCGGTGCGTGGTGTGCGAGGAGGTGCACCAGAACATGGCGGAGCACATGAAGAACAAGCACCAGGGGCGCACTAACTGCTGCGAGGAGTGTGGAAAGCGTTCCCGTTCAAGGCTCGGCTTACGGCGCACGTGAAGAAAATGCACACCTCGAAGAATGTCGTCTGTGACCAGTGTCAGAAAAGCTTCAGCAGATACACGATCGAGGACCACAAGCGGGCAGTTCACAAATCGCGCTACATCTGCGAACACTGTCCGCGCACGTTCAAGTCGCGTCTTGCCCTCACGCAACACATGGAGGAACACGTGGAGGGATTGCGGAAGACGGTTTCCGCCACCTGCGAAAAGTGTGGCGTAGTGCTGCGGGACAAGTACACGCTGCAGACGCACATCAAGCGCATGCACACGGAACATCCGCCCGCCAGCTGCGGCACATGCGGGAAGGTGTTCAAGTCGAAGCACAATCTCAAAACGCACCTGGCCAACGTGTGCACGGAGCGTTCGTTCCCGTGCCCGATCTGTGCGAAGCAGTTTAAGAAGAAGATTAAACTGACCGAACACATGACGACGCACACGAAGAGTGTGCTGTACCAGTGTCCGTACTGTCCGAAGACGTTCAGCTTCGAGACGCAGCTGTACACGCACCGGAAGCAGGCGCACTACGAGCAGTGGCTGGAGATGCAGCGGAAGCGCAAGGAGGGTGTACGGTTTAAGGTTAACCGCATCACGGATATGCCCTCTACCTGAACCGAATGCGCGCGTATATGTGTGCGTTTTTATGCTAGGAGTAGTAATACTGTAAAATAATA]
[-] EMBL CNS08YH3 [AAGTTCCGCTTTCAAGGCGAAGCAACTCGAGCATCGGGACATGCATCAGAATCCGGACCGGTTCCGGTGCGTGGTGTGCGAGGAGGTGCACCAGAACATGGCGGAGCACATGAAGAACAAGCACCAGGGGCGCACTAACTGCTGCGAGGAGTGTGGAAAGCGTTCCCGTTCAAGGCTCGGCTTACGGCGCACGTGAAGAAAATGCACACCTCGAAGAATGTCGTCTGTGACCAGTGTCAGAAAAGCTTCAGCAGATACACGATCGAGGACCACAAGCGGGCAGTTCACAAATCGCGCTACATCTGCGAACACTGTCCGCGCACGTTCAAGTCGCGTCTTGCCCTCACGCAACACATGGAGGAACACGTGGAGGGATTGCGGAAGACGGTTTCCGCCACCTGCGAAAAGTGTGGCGTAGTGCTGCGGGACAAGTACACGCTGCAGACGCACATCAAGCGCATGCACACGGAACATCCGCCCGCCAGCTGCGGCACATGCGGGAAGGTGTTCAAGTCGAAGCACAATCTCAAAACGCACCTGGCCAACGTGTGCACGGAGCGTTCGTTCCCGTGCCCGATCTGTGCGAAGCAGTTTAAGAAGAAGATTAAACTGACCGAACACATGACGACGCACACGAAGAGTGTGCTGTACCAGTGTCCGTACTGTCCGAAGACGTTCAGCTTCGAGACGCAGCTGTACACGCACCGGAAGCAGGCGCACTACGAGCAGTGGCTGGAGATGCAGCGGAAGCGCAAGGAGGGTGTACGGTTTAAGGTTAACCGCATCACGGATATGCCCTCTACCTGAACCGAATGCGCGCGTATATGTGTGCGTTTTTATGCTAGGAGTAGTAATACTGTAAAATAATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6265#0 CCGCATTTTCTCGCTGCAATAGATATCGCCAGGTAACTGAATGTTACTGTTACTGTGAAC 60
consensus_6265#1 ------------------------------------------------------------
consensus_6265#0 ATAAATAAAACGACATAGGAGGACATTCCTCTTGCAGCCCGTGTTCGCCATGGCGTCAGT 120
consensus_6265#1 ------------------------------------------------------------
consensus_6265#0 GAAGGTGGAAAATAGTTCCAGGATCGTTGCCAACTCTCCACGGGATCATCCACGGTGCGA 180
consensus_6265#1 ------------------------------------------------------------
consensus_6265#0 TGTGTGTCTGCGCTGGGAAAGTGTTTGCTTCGGCAGATCGGATCCCATCTTCACTGGGAA 240
consensus_6265#1 ------------------------------------------------------------
consensus_6265#0 AGATGTGTTGGCCATGGTAACGCAGTATCTCGACATGAACATCACCCTAACACTCGTCTG 300
consensus_6265#1 ------------------------------------------------------------
consensus_6265#0 CGAACGCTGCTGGAGTAGATTGAAGGAGTTCGATGAGTTCTACCGGATGGTAAGCGAGCA 360
consensus_6265#1 ------------------------------------------------------------
consensus_6265#0 GCACACCAGCAAAGCGGATCTGCGGCCCCCAGACCGGAAGGAAGCTGACCCGGTCGAACA 420
consensus_6265#1 ------------------------------------------------------------
consensus_6265#0 GCGCGTGGAGGGAGTCGTTTATGGAATGGAATTTGTCGACATAAAGTACGAACCGCTGGG 480
consensus_6265#1 ------------------------------------------------------------
consensus_6265#0 TGAAGACGCGAATGTAACGATAAAAGAGGAGAAGGAGGAGGAAGCGGAGGAGCATGAGAG 540
consensus_6265#1 ------------------------------------------------------------
consensus_6265#0 AGAACCACTTCCGGACAGTGACGACTGTGACAAGCTGTTGCCCACCCAGTCGATGGAGTT 600
consensus_6265#1 ------------------------------------------------------------
consensus_6265#0 GGACGATGAGGAACGCCTGGCGGATGACGATACGAACTCGTTGTCCTCCGACGATAGTGA 660
consensus_6265#1 ------------------------------------------------------------
consensus_6265#0 CGATTCCTCGGTGCCGGATCGAGTGAAGCGCGGCGGCAAAGCATCGGCCATCGGCAAGAA 720
consensus_6265#1 ------------------------------------------------------------
consensus_6265#0 AGAGCCCAAGGTGGATAAGGAGATACTGGAGTTTTACCAGCGGCTGGTGTGCGAGATTTG 780
consensus_6265#1 ------------------------------------------------------------
consensus_6265#0 TGATGCGGACGGATGCTGGCCGGCGAACCGTCGATCGAGTACAGCAATCTGAGGGAGCTG 840
consensus_6265#1 ------------------------------------------------------------
consensus_6265#0 AACAAGCACATGCGAAAGGTGCACGAGCAGGTCGGCGCTACGCCATCAAGTGTCCGATGT 900
consensus_6265#1 ------------------------------------------------------------
consensus_6265#0 GTGACAAAAAGTTCCGCTATCG-GGCGAACTGGCTCGAGCATCGGGAGTTGTATCAGAAT 959
consensus_6265#1 --------AAGTTCCGCTTTCAAGGCGAAGCAACTCGAGCATCGGGACATGCATCAGAAT 52
********** ** ****** ************** ** ********
consensus_6265#0 CCGGACCGGTTCCGGTGCGTGGTGTGCGAGGAGGTGCACCAGAACATGGCGGA-CACATG 1018
consensus_6265#1 CCGGACCGGTTCCGGTGCGTGGTGTGCGAGGAGGTGCACCAGAACATGGCGGAGCACATG 112
***************************************************** ******
consensus_6265#0 AAGAACAAGCACCAGGAGCGCACTTACTGCTGCGAGGAGTGTGGCAAGCGGTTCCCGTTC 1078
consensus_6265#1 AAGAACAAGCACCAGGGGCGCACTAACTGCTGCGAGGAGTGTGGAAAGCG-TTCCCGTTC 171
**************** ******* ******************* ***** *********
consensus_6265#0 AAGGCTCGGCTTACGGCGCACGTGAAGAAAATGCACACCTCGAAGGATGTCGTCTGTGAC 1138
consensus_6265#1 AAGGCTCGGCTTACGGCGCACGTGAAGAAAATGCACACCTCGAAGAATGTCGTCTGTGAC 231
********************************************* **************
consensus_6265#0 CAGTGTCAGAAAAGCTTCAGCAGATACACGATCGAGGACCACAAGCGGGCAGTTCACGAA 1198
consensus_6265#1 CAGTGTCAGAAAAGCTTCAGCAGATACACGATCGAGGACCACAAGCGGGCAGTTCACAAA 291
********************************************************* **
consensus_6265#0 TCGCGCTACATCTGCGAACACTGTTCGCGCACGTTCAAGTCGCGTCTTGCCCTCACGCAA 1258
consensus_6265#1 TCGCGCTACATCTGCGAACACTGTCCGCGCACGTTCAAGTCGCGTCTTGCCCTCACGCAA 351
************************ ***********************************
consensus_6265#0 CACATGGAGGAACACGTGGAGGGATTGCGGAAGACGGTTTCCGCCACCTGCGAAAAGTGT 1318
consensus_6265#1 CACATGGAGGAACACGTGGAGGGATTGCGGAAGACGGTTTCCGCCACCTGCGAAAAGTGT 411
************************************************************
consensus_6265#0 GGCGTAGTGCTGCGGGACAAGTACACGCTGCAGACGCACATCAAGCGCATGCACACGGAA 1378
consensus_6265#1 GGCGTAGTGCTGCGGGACAAGTACACGCTGCAGACGCACATCAAGCGCATGCACACGGAA 471
************************************************************
consensus_6265#0 CATCCGCCCGCCAGCTGCGGCACATGCGGGAGGGTGTTCAAGTCGAAGCACAATCTCAAC 1438
consensus_6265#1 CATCCGCCCGCCAGCTGCGGCACATGCGGGAAGGTGTTCAAGTCGAAGCACAATCTCAAA 531
******************************* ***************************
consensus_6265#0 GCGCCCCTGGCCAACGTGTGCACAAAAAAAAAAGTTCCCGT------------------- 1479
consensus_6265#1 ACGCACCTGGCCAACGTGTGCACGGAGCGTTC-GTTCCCGTGCCCGATCTGTGCGAAGCA 590
*** ****************** * ********
consensus_6265#0 ------------------------------------------------------------
consensus_6265#1 GTTTAAGAAGAAGATTAAACTGACCGAACACATGACGACGCACACGAAGAGTGTGCTGTA 650
consensus_6265#0 ------------------------------------------------------------
consensus_6265#1 CCAGTGTCCGTACTGTCCGAAGACGTTCAGCTTCGAGACGCAGCTGTACACGCACCGGAA 710
consensus_6265#0 ------------------------------------------------------------
consensus_6265#1 GCAGGCGCACTACGAGCAGTGGCTGGAGATGCAGCGGAAGCGCAAGGAGGGTGTACGGTT 770
consensus_6265#0 ------------------------------------------------------------
consensus_6265#1 TAAGGTTAACCGCATCACGGATATGCCCTCTACCTGAACCGAATGCGCGCGTATATGTGT 830
consensus_6265#0 ---------------------------------------
consensus_6265#1 GCGTTTTTATGCTAGGAGTAGTAATACTGTAAAATAATA 869
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||