These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_627#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 674 fasta sequence [CCGCGCAAATACACACACACACACATACAGACAGCACACGTGGACGATGTAGTAGCGCGATACCGTAAAGTCACCGGTACCTGCTTTGTGAAGAGTAGAACAAGGGATTTAACCAAAACAAAAGTAACTAACCTAAAACAAAACAATCTGAACGAACGTCACACACGTGGTAGTTGCTGATAGAGAGCGAGAGAGAGAGAGAGAAAGAGTAGCTGGCAAAGCTTGGGTCAATGATTGGACCCTGTAAAAGGATACTTCAACAGGCTGGTATAACAAAAAAAAAAAGAAACAAAGAAGGTTTGCAGAACTGAGACACAGCACTAATGTCATCGGAATCTCGAGCATCGTGCAGGAGCAGTCGCGGAGCAGTAGTGAGTAGTAGTAGTTTGAGCGGAAGCGCTAGTGCTAAGAGAACTTCTTCATAGATGATGATTATATACTTATACATGCATATTATACTTATACATATATATATATATATATATATATACACACACAGATGGGCAGGCCACGGGGGCCCCCTTTCAGCCCCTCACCCTCCCCTCCCCCTCCTCCGTTTCCCCACACATGGGCGTTAGGTAATTATTATTCCTCGTCGATAGTTCAGACTCTAGTCAAACATCATAGTTTTTATTAAGGCAAAACAATAGCAAAAACAACAACAACAACAGAAA] [+] EMBL BM634629 [CCGCGCAAATACACACACACACACATACAGACAGCACACGTGGACGATGTAGTAGCGCGATACCGTAAAGTCACCGGTACCTGCTTTGTGAAGAGTAGAACAAGGGATTTAACCAAAACAAAAGTAACTAACCTAAAACAAAACAATCTGAACGAACGTCACACACGTGGTAGTTGCTGATAGAGAGCGAGAGAGAGAGAGAGAAAGAGTAGCTGGCAAAGCTTGGGTCAATGATTGGACCCTGTAAAAGGATACTTCAACAGGCTGGTATAACAAAAAAAAAAAGAAACAAAGAAGGTTTGCAGAACTGAGACACAGCACTAATGTCATCGGAATCTCGAGCATCGTGCAGGAGCAGTCGCGGAGCAGTAGTGAGTAGTAGTAGTTTGAGCGGAAGCGCTAGTGCTAAGAGAACTTCTTCATAGATGATGATTATATACTTATACATGCATATTATACTTATACATATATATATATATATATATATATACACACACAGATGGGCAGGCCACGGGGGCCCCCTTTCAGCCCCTCACCCTCCCCTCCCCCTCCTCCGTTTCCCCACACATGGGCGTTAGGTAATTATTATTCCTCGTCGATAGTTCAGACTCTAGTCAAACATCATAGTTTTTATTAAGGCAAAACAATAGCAAAAACAACAACAACAACAGAAA] consensusID : consensus_627#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 663 fasta sequence [CCGGAAATACACTCTCACAAACACACAACCACACATCCAGTTAGTATACAATCACACACACAATCACACACACACACACACACACACACACACACACACACAGAACGTACATAACAAATAAAAACACGCCACAACGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGTAGCTGGCAAAGCTTGGGTCAATGATTGGACCCTGCAAAAGGATACTTCAACGGGCTGGTATAACAAAAAAAAAAGAAACAAAGAAGGTTTGCAGAACTGAGACACAGCACTAATGTCTAATCGGAATCTCGAGCATCGTGCAGGAGCAGTCGCGGAGCAGTAGTGAGTAGTAGTAGTTTGAGCGGAAGCGCTAGTGCTAAGAGAACTTCTTCATAGATGATGATTATATACTTATACATGCATATTATACTTATACATATATATATATACACACACAGATGGGCAGGCCACTGGGGCCCCTTCAGCCCCTTGCCCTCCCCTCCCCCTCCTCCGTTTCCCCACACATGGGCGTTAGGTAATTATTATTCCTCGTCGATAGTTCAGACTCTAGTCAAACATCATAGTTTTTATTCGGGCAAAACAATAGCAAAAACCACAACCACAACAG] [+] EMBL BM620675 [CCGGAAATACACTCTCACAAACACACAACCACACATCCAGTTAGTATACAATCACACACACAATCACACACACACACACACACACACACACACACACACACAGAACGTACATAACAAATAAAAACACGCCACAACGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGTAGCTGGCAAAGCTTGGGTCAATGATTGGACCCTGCAAAAGGATACTTCAACGGGCTGGTATAACAAAAAAAAAAGAAACAAAGAAGGTTTGCAGAACTGAGACACAGCACTAATGTCTAATCGGAATCTCGAGCATCGTGCAGGAGCAGTCGCGGAGCAGTAGTGAGTAGTAGTAGTTTGAGCGGAAGCGCTAGTGCTAAGAGAACTTCTTCATAGATGATGATTATATACTTATACATGCATATTATACTTATACATATATATATATACACACACAGATGGGCAGGCCACTGGGGCCCCTTCAGCCCCTTGCCCTCCCCTCCCCCTCCTCCGTTTCCCCACACATGGGCGTTAGGTAATTATTATTCCTCGTCGATAGTTCAGACTCTAGTCAAACATCATAGTTTTTATTCGGGCAAAACAATAGCAAAAACCACAACCACAACAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_627#0 CCGCGCAAATACACACACACACACATACAGACAGCACACGTGGACGATGTAGTA----GC 56 consensus_627#1 --CCGGAAATACACTCTCACAAACACACA-ACCACACATCCAGTTAGTATACAATCACAC 57 ** ******** * **** *** *** ** **** * * ** * * consensus_627#0 GCGATACCGTAAAGTCACCGGTACCTGCTTTGTGAAGAGTAGA-ACAAGGGATTTAACCA 115 consensus_627#1 ACACAATCACACACACACACACACACACACACACACACACACACAGAACGTACATAACAA 117 * * * * * *** ** * * * * * ** * * **** * consensus_627#0 AAACAAAAGTAACTAACCTAAAACAAAACAATCTGAACGAACGTCACACAC---GTGGTA 172 consensus_627#1 ATAAAAACACGCCACAACGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA 177 * * *** * * * *** * * * ** ** * * * * * * * consensus_627#0 GTTGCTGATAGAGAGCGAGAGAGAGAGAGAGAAAGAGTAGCTGGCAAAGCTTGGGTCAAT 232 consensus_627#1 GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGTAGCTGGCAAAGCTTGGGTCAAT 237 * ** ****** ******************************************** consensus_627#0 GATTGGACCCTGTAAAAGGATACTTCAACAGGCTGGTATAACAAAAAAAAAAAGAAACAA 292 consensus_627#1 GATTGGACCCTGCAAAAGGATACTTCAACGGGCTGGTATAACAAAAAAAAAA-GAAACAA 296 ************ **************** ********************** ******* consensus_627#0 AGAAGGTTTGCAGAACTGAGACACAGCACTAATGTC--ATCGGAATCTCGAGCATCGTGC 350 consensus_627#1 AGAAGGTTTGCAGAACTGAGACACAGCACTAATGTCTAATCGGAATCTCGAGCATCGTGC 356 ************************************ ********************** consensus_627#0 AGGAGCAGTCGCGGAGCAGTAGTGAGTAGTAGTAGTTTGAGCGGAAGCGCTAGTGCTAAG 410 consensus_627#1 AGGAGCAGTCGCGGAGCAGTAGTGAGTAGTAGTAGTTTGAGCGGAAGCGCTAGTGCTAAG 416 ************************************************************ consensus_627#0 AGAACTTCTTCATAGATGATGATTATATACTTATACATGCATATTATACTTATACATATA 470 consensus_627#1 AGAACTTCTTCATAGATGATGATTATATACTTATACATGCATATTATACTTATACATATA 476 ************************************************************ consensus_627#0 TATATATATATATATATATACACACACAGATGGGCAGGCCACGGGGGCCCCCTTTCAGCC 530 consensus_627#1 TA------------TATATACACACACAGATGGGCAGGCCACTGGGGCCCC--TTCAGCC 522 ** **************************** ******** ******* consensus_627#0 CCTCACCCTCCCCTCCCCCTCCTCCGTTTCCCCACACATGGGCGTTAGGTAATTATTATT 590 consensus_627#1 CCTTGCCCTCCCCTCCCCCTCCTCCGTTTCCCCACACATGGGCGTTAGGTAATTATTATT 582 *** ******************************************************* consensus_627#0 CCTCGTCGATAGTTCAGACTCTAGTCAAACATCATAGTTTTTATTAAGGCAAAACAATAG 650 consensus_627#1 CCTCGTCGATAGTTCAGACTCTAGTCAAACATCATAGTTTTTATTCGGGCAAAACAATAG 642 ********************************************* ************* consensus_627#0 CAAAAACAACAACAACAACAGAAA 674 consensus_627#1 CAAAAACCACAACCACAACAG--- 663 ******* ***** ******* |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||