These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6272#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1095 fasta sequence [CCGAAAGTTTGTAGTGGGATTGTGCTCGGTGTGAAAACATGCGATTTCTTCACGTATCGCTTTTGGGAAGATGGTCAAAAGGGCGAAGGCACTTGTGTTCCGCGGTCGGACAGTTGACGCCATGCCGCGAGTTGACGCCGGAGATGAAACATCAGCTGGAGCGGAAGTGGCAGAACAAGCTGGGCGACTGCCGGTTCGACCCTGCCGACACGGTTAAACCGAAACGCTACGTGCTGGCCATGTTTCCGTATCCCTCCGGCAGCCTGCACATGGGCCACGTGCGGGTGTACACGATCAGCGATGCGATGGCCCGGTTTTACCGGCTGAACGGTGCGAACGTGCTGCACCCGATGGGTTGGGATGCGTTCGGGCTGCCGGCGGAGAATGCTGCCATGCAGCGGCGCATTCCGGCCGACACGTGGACGCACCGGAACATTGGTGAGATGCGTAAGCAGCTGGAGCAGCTTGCGTTCAGCTTCGACTGGGAGCGAGAGTTTGCTACCTGCCAGCCGGAGTACTACCGCTGGACGCAGCAGCTGTTTCTGATGCTGTACAGGGATGGGCTGGCGTACCAGCGGGAAGCACTCGTCAACTGGGACCCGGTCGATGAGACCGTGCTGGCCGACGAGCAGGTGGACGATAACGGTTGCTCCTGGCGGTCGGGCGCGAAGGTGGAGAAAAAGGTGCTGCGCCAATGGTTCGTGAAGACGACCCGGTTCGCCAAACCGCTGCTGGAGGGTTTAAGCGATCCGGGGCTGGAAGATTGGAAGGATATCATAAAGCTGCAGCGGCACTGGATCGGCGAGTGCGAGGGATATGCGTTCGAGCTGCCGCTGGTTGGAGAGCACAAGATGAAGAGCATTGCCGTGTGGACTAGCGATCCGGTCGAGCTGGAACGGGCCCTATTTATTGCTATTCATCAGACGAATCTACTGAACACGGCTAAACAAACCGATTGCCTGCTGGAGAACGTTACCGTACAGAATCCGTTCACCGGGGATGTGCTGCCAGTGATCGTAACGGAAGCGGTCGCCTTTCCGGAGGGTTGCGACACCTACCTGGCGGTCGGGAGCGAATCGAATCGGCAGTTAGCGA] [+] EMBL BM651464 [CCGAAAGTTTGTAGTGGGATTGTGCTCGGTGTGAAAACATGCGATTTCTTCACGTATCGCTTTTGGGAAGATGGTCAAAAGGGCGAAGGCACTTGTGTTCCGCGGTCGGACAGTTGACGCCATGCCGCGAGTTGACGCCGGAGATGAAACATCAGCTGGAGCGGAAGTGGCAGAACAAGCTGGGCGACTGCCGGTTCGACCCTGCCGACACGGTTAAACCGAAACGCTACGTGCTGGCCATGTTTCCGTATCCCTCCGGCAGCCTGCACATGGGCCACGTGCGGGTGTACACGATCAGCGATGCGATGGCCCGGTTTTACCGGCTGAACGGTGCGAACGTGCTGCACCCGATGGGTTGGGATGCGTTCGGGCTGCCGGCGGAGAATGCTGCCATGCAGCGGCGCATTCCGGCCGACACGTGGACGCACCGGAACATTGGTGAGATGCGTAAGCAGCTGGAGCAGCTTGCGTTCAGCTTCGACTGGGAGCGAGAGTTTGCTACCTGCCAGCCGGAGTACTACCGCTGGACGCAGCAGCTGTTTCTGATGCTGTACAGGGATGGGCTGGCGTACCAGCGGGAAGCACTCGTCAACTGGGACCCGGTCGATGAGACCGTGCTGGCCGACGAGCAGGTGGACGATAACGGTTGCTCCTGGCGGTCGGGg ] [+] EMBL BM631127 [ ccGCTTCGACTGGGAGCGAGAGTTTGCTACCTGCCAGCCGGAGTACTACCGCTGGACGCAGCAGCTGTTTCTGATGCTGTACAGGGATGGGCTGGCGTACCAGCGGGAAGCACTCGTCAACTGGGACCCGGTCGATGAGACCGTGCTGGCCGACGAGCAGGTGGACGATAACGGTTGCTCCTGGCGGTCGGGCGCGAAGGTGGAGAAAAAGGTGCTGCGCCAATGGTTCGTGAAGACGACCCGGTTCGCCAAACCGCTGCTGGAGGGTTTAAGCGATCCGGGGCTGGAAGATTGGAAGGATATCATAAAGCTGCAGCGGCACTGGATCGGCGAGTGCGAGGGATATGCGTTCGAGCTGCCGCTGGTTGGAGAGCACAAGATGAAGAGCATTGCCGTGTGGACTAGCGATCCGGTCGAGCTGGAACGGGCCCTATTTATTGCTATTCATCAGACGAATCTACTGAACACGGCTAAACAAACCGATTGCCTGCTGGAGAACGTTACCGTACAGAATCCGTTCACCGGGGATGTGCTGCCAGTGATCGTAACGGAAGCGGTCGCCTTTCCGGAGGGTTGCGACACCTACCTGGCGGTCGGGAGCGAATCGAATCGGCAGTTAGCGA] [+] EMBL BM604440 [ ccgGCTACCTGCCAGCCGGAGTACTACCGCTGGACGCAGCAGCTGTTTCTGATGCTGTACAGGGATGGGCTGGCGTACCAGCGGGAAGCACTCGTCAACTGGGACCCGGTCGATGAGACCGTGCTGGCCGACGAGCAGGTGGACGATAACGGTTGCTCCTGGCGGTCGGGCGCGAAGGTGGAGAAAAAGGTGCTGCGCCAATGGTTCGTGAAGACGACCCGGTTCGCCAAACCGCTGCTGGAGGGTTTAAGCGATCCGGGGCTGGAAGATTGGAAGGATATCATAAAGCTGCAGCGGCACTGGATCGGCGAGTGCGAGGGATATGCGTTCGAGCTGCCGCTGGTTGGAGAGCACAAGATGAAGAGCATTGCCGTGTGGACTAGCGATCCGGTCGAGCTGGAACGGGCCCTATTTATTGCTATTCATCAGACGAATCTACTGAACACGGCTAAACAAACCGATTGCCTGCTGGAGAACGTTACCGTACAGAATCCGTTCACCGGGGATGTGCTGCCAGTGATCGTAACGGAAGCGGTCGCCTTTCCGGAGGGTTGCGACACCTACCTGGCGGTCG ] consensusID : consensus_6272#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 701 fasta sequence [ATGCGATTTCTTCACGTATCGCTTTTGGAAAGATGGTCAAAAGGGCGAGGCACTTGTGTTCCGCGGTCGGACAGTTGACGACATGCCGCGAGTTGGCACCGGAACTGGTCCGAAGCGACATTCCCGGGCATTCTGAACTGGCAGAAACGGCTCTGGCTGACGATGTACGATTTCCGGGAGGCGAGGGCAAACATCGATCCCAGCTCAGGCGCACCAACACCAACGCCCGAGTTTACCGAGCACGAGCACAAGCTGTGGGACGCACGGAACTATTTCACCGCCGGTGCAACTTCAACTACCGCCACTCGCACCAGCTGAGCGTGGGCATCTCGAAGATGCAGGGCCTGACGAACGCGATCCGGCGTGCCCCGCCGGCCGTGGTGAGCTACGGCCGACAGTACGAACGGGCACTGGCCGCCCAGATCATTATGCTTGCCCCGATGGCACCCCACTTTGCGGCGGAACTGTGGGAGCAGCTTGCGACGGCACCGCACCGTGTGGATGACGACGCGGCCGGCCTGCGCTGGGACGGTACGGTGTTTGAGCAACGGTGGCCCGAAATCGACGAAGAGTTTCCGCTCGATCTTACCTTTAAGATCAACGGTGCGGAGTGTTGCATACTTAAAATCCCGGCCAAGCGCTTCAACCAGCTGACGCATCAGGAATCGCTCGATCTGGCACTGCGGCAGGAGCCGATCGTG] [+] EMBL CNS093Z2 [ATGCGATTTCTTCACGTATCGCTTTTGGAAAGATGGTCAAAAGGGCGAGGCACTTGTGTTCCGCGGTCGGACAGTTGACGACATGCCGCGAGTTGGCACCGGAACTGGTCCGAAGCGACATTCCCGGGCATTCTGAACTGGCAGAAACGGCTCTGGCTGACGATGTACGATTTCCGGGAGGCGAGGGCAAACATCGATCCCAGCTCAGGCGCACCAACACCAACGCCCGAGTTTACCGAGCACGAGCACAAGCTGTGGGACGCACGGAACTATTTCACCGCCGGTGCAACTTCAACTACCGCCACTCGCACCAGCTGAGCGTGGGCATCTCGAAGATGCAGGGCCTGACGAACGCGATCCGGCGTGCCCCGCCGGCCGTGGTGAGCTACGGCCGACAGTACGAACGGGCACTGGCCGCCCAGATCATTATGCTTGCCCCGATGGCACCCCACTTTGCGGCGGAACTGTGGGAGCAGCTTGCGACGGCACCGCACCGTGTGGATGACGACGCGGCCGGCCTGCGCTGGGACGGTACGGTGTTTGAGCAACGGTGGCCCGAAATCGACGAAGAGTTTCCGCTCGATCTTACCTTTAAGATCAACGGTGCGGAGTGTTGCATACTTAAAATCCCGGCCAAGCGCTTCAACCAGCTGACGCATCAGGAATCGCTCG ] [+] EMBL BX622713 [ CTTACCTTTAAGATCAACGGTGCGGAGTGTTGCATACTTAAAATCCCGGCCAAGCGCTTCAACCAGCTGACGCATCAGGAATCGCTCGATCTGGCACTGCGGCAGGAGCCGATCGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6272#0 CCGAAAGTTTGTAGTGGGATTGTGCTCGGTGTGAAAACATGCGATTTCTTCACGTATCGC 60 consensus_6272#1 --------------------------------------ATGCGATTTCTTCACGTATCGC 22 ********************** consensus_6272#0 TTTTGGGAAGATGGTCAAAAGGGCGAAGGCACTTGTGTTCCGCGGTCGGACAGTTGACGC 120 consensus_6272#1 TTTTGGAAAGATGGTCAAAAGGGCGA-GGCACTTGTGTTCCGCGGTCGGACAGTTGACGA 81 ****** ******************* ******************************** consensus_6272#0 CATGCCGCGAGTTGACGCCGGAGATGAAACATCAGCTGGAGCGGAAGTGGCAGAACAAGC 180 consensus_6272#1 CATGCCGCGAGTTGGCACCGGAACTG-------GTCCGAAGCGACATTCCCGGG------ 128 ************** * ***** ** * * **** * * * * consensus_6272#0 TGGGCGACTGCCGGTTCGACCCTGCCGACACGGTTAAACCGAAACGCTACGTGCTGGCCA 240 consensus_6272#1 -----------CATTCTGAACTGGCAGAAACGGCT---CTGGCTGACGATGTACGA---- 170 * * ** * ** ** **** * * * * * ** * consensus_6272#0 TGTTTCCGTATCCCTCCGGCAGCCTGCACATGGGCCACGTGCGGGTGTACACGATCAGCG 300 consensus_6272#1 --TTTCCGGGAGGCGAGGGCAA-----ACATCGATCCCA-------GCTCAGGCGCACCA 216 ****** * **** **** * * * * ** * ** * consensus_6272#0 ATGCGATGGCCCGGTTTTACCGGCTGAACGGTGCGAACGTGCTGCACCCGATGGGTTGGG 360 consensus_6272#1 ACACCAACGCCCGAGTTTACCGA--GCACGAGCACAAGCTGTGGGACGCACGGAACTATT 274 * * * ***** ******* * *** ** ** * ** * * * consensus_6272#0 ATGCGTTCGGGCTGCCGGCGGAGAATGCTGCCATGCAGCGGCGCATTCCGGCCGACACGT 420 consensus_6272#1 TCACCGCCGGTGCAACTTCAACTACCGCCACT-CGCACCAGCTGAGCGTGGGCATCTCGA 333 * *** * * * ** * *** * ** * ** * * ** consensus_6272#0 GGACGCACCGGAACATTGGTGAGATGCGTAAGCAGCTGGAGCAGCTTGCGTTCAGCTTCG 480 consensus_6272#1 AGATGCAGGGCCTGACGAACGCGATCCG---GCGTGCCCCGCCGGCCGTGGTGAGCTACG 390 ** *** * * * *** ** ** ** * * * * **** ** consensus_6272#0 ACTGGGAGCGAGAGTTTGCTACCTGCCAGCCGGAGTACTACCGCTGGACGCAGCAGCTGT 540 consensus_6272#1 GCCGACAGTACGAACGGGC-ACTGGCCGCCCAGATCATTAT-GCTTGCCCCGATGGCACC 448 * * ** ** ** ** *** ** ** * ** *** * * * ** consensus_6272#0 TTCTGATGCTGTACAGGGATGGGC-TGGCGTACCAGCGGGAAGCACT-CGTCAACTGGGA 598 consensus_6272#1 CCACTTTGCGGCGGAACTGTGGGAGCAGCTTGCGACGGCACCGCACCGTGTGGATGACGA 508 *** * * **** ** * * * * **** ** * ** consensus_6272#0 CCCGGTCGATGAGACCGTGCTGGCCGACGAGCAGGTGGACGA-TAACGGTTGCTCCTGGC 657 consensus_6272#1 CGCGGCCG----GCCTGCGCTGG--GACGGTACGGTGTTTGAGCAACGGTGGCCC---GA 559 * *** ** * * * ***** **** **** ** ****** ** * * consensus_6272#0 GGTCGGGCGCGAAGGTGGAGAAAAAGGTGCTGCGCCAATGGTTCGTGAAGACGACCCGGT 717 consensus_6272#1 AATCGACGAAGAGTTTCCGCTCGATCTTACCTTTAAGATCAACGGTGCGGAGTGTTGCAT 619 *** ** * * * * ** *** ** * consensus_6272#0 TCGCCAAACCGCTGCTGGAGGGTTTAAGCGATCCGGGGCTGGAAGATTGGAAGGATATCA 777 consensus_6272#1 ACTTAAAATCCCGGCCA-AGCGCTTCAACCAGCTGACGCATCAGGAATCGCTCGATCTGG 678 * *** * * ** ** * ** * * * * * ** * ** * * *** * consensus_6272#0 TAAAGCTGCAGCGGCACTGGATCGGCGAGTGCGAGGGATATGCGTTCGAGCTGCCGCTGG 837 consensus_6272#1 CA---CTGCGGCAGGAGCCGATCGTG---------------------------------- 701 * **** ** * * ***** consensus_6272#0 TTGGAGAGCACAAGATGAAGAGCATTGCCGTGTGGACTAGCGATCCGGTCGAGCTGGAAC 897 consensus_6272#1 ------------------------------------------------------------ consensus_6272#0 GGGCCCTATTTATTGCTATTCATCAGACGAATCTACTGAACACGGCTAAACAAACCGATT 957 consensus_6272#1 ------------------------------------------------------------ consensus_6272#0 GCCTGCTGGAGAACGTTACCGTACAGAATCCGTTCACCGGGGATGTGCTGCCAGTGATCG 1017 consensus_6272#1 ------------------------------------------------------------ consensus_6272#0 TAACGGAAGCGGTCGCCTTTCCGGAGGGTTGCGACACCTACCTGGCGGTCGGGAGCGAAT 1077 consensus_6272#1 ------------------------------------------------------------ consensus_6272#0 CGAATCGGCAGTTAGCGA 1095 consensus_6272#1 ------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||