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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6273#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1391 fasta sequence
[CCGACCGTTTCATGGGCAGTTGCTGGAATACACCACGACCCGTACACACAGTAACACACTTCTTATAGCTTTACACTAACAACCACTCTCCTCACGCTCCTCTTCCCCTTCCCCTCCACACAGACAGCAGCGCCGTTTGTAGCAGGATCTACTACCGTGCGGTTTGGTATGGCGGCCAATCAACACTAAACACCACACATCTACTAAAACACACCGGAACAATAAACAAATGTTAAACTTACTATATGAATATACATCTAGACGCATATATACGCATGAACTACTACTTCCCTCGTGTTCTGACAAAACACATTACCTTGTCCCCCCCCCCCTCCCTCCGGTTTGCTTACCACCACTGCACCACCAGTATGAATTTGTTCCATAATAACGCTTCGTAACTCGTTACCAGGAGCACAACTGGGTCGTTGGCGGAGTGCTGCGCGTTACGTGCTGAAGATATAAACTAGCACCGCGCACACTTTCGACACGCAACCACAGCTACACATCACAAAAGCAACATCCTGGCCCTATCCGTTTTCTCATTCTTAAAACATCTTTCCTTAGACCAAAACCAACGCAAACTAGCAAAAGGTACTAGAGTAACTGGTCCAGTACACACTGTGCTACAATTGAGCGTAGGGAGGAGGTATAATTTCTGCAAAATGTATAAAACAAAACTACAACAAACTAATTACTTGCAATCCATTCTAAAGCACGAAAACTCCTCAAAATAAAAACGGGAAGTAAACAAAAAAATCAGAACGAACAAATTTACCTAAAAAAAAGTAAACAAAAACAAAACAAAAAAGCCTACTAACCTTACTAATCCCATTGGATTGTCGCGAACCCGTTGGAGCAAAAGCGTAAGATAAAGATAAGGAAGTTAAAAGCAAAACTGAAATCAAAA--ACACACACACACACACACACACACACACACACACACACAAACTACACAAATACACCTAAGCGAAACACCTGCAACAACAGCAAGAACAACAAGGAAAAACCCACAAATACTATCAACAATCAATTAGATGTAACTAAAGAAACTAGAAGAAAGAGAGAAAAAGAAAACATTTAGGCCGAGGCCGAGGCGCAAAAGGAAAATTGCCAAGCACACAAAAAACAAACAAAAAACAGATTAGGTTACAAAAGAGAACAGAAACTGTCGAGCAATGCGTCGCGCGAGTACATTTTCTACTTTCACGTTCTTCACACCGCTGATGGAAGCAAACAAATGAACGGAACGCGGGAAGGGAATAGACAACAACACATCGCCGGAACGATCCGGGGCCCGGTGGTGGATGAAAGATTAGAGTTTAGCCCTTTAGCCGAGACTCTCTGCACTGCTGCAGCAAGGAGAGCAAGTTTTCCAACATACATTTTCCCTG]
[+] EMBL BM608195 [CCGACCGTTTCATGGGCAGTTGCTGGAATACACCACGACCCGTACACACAGTAACACACTTCTTATAGCTTTACACTAACAACCACTCTCCTCACGCTCCTCTTCCCCTTCCCCTCCACACAGACAGCAGCGCCGTTTGTAGCAGGATCTACTACCGTGCGGTTTGGTATGGCGGCCAATCAACACTAAACACCACACATCTACTAAAACACACCGGAACAATAAACAAATGTTAAACTTACTATATGAATATACATCTAGACGCATATATACGCATGAACTACTACTTCCCTCGTGTTCTGACAAAACACATTACCTTGTCCCCCCCCCCCTCCCTCCGGTTTGCTTACCACCACTGCACCACCAGTATGAATTTGTTCCATAATAACGCTTCGTAACTCGTTACCAGGAGCACAACTGGGTCGTTGGCGGAGTGCTGCGCGTTACGTGCTGAAGATATAAACTAGCACCGCGCACACTTTCGACACGCAACCACAGCTACACATCACAAAAGCAACATCCTGGCCCTATCCGTTTTCTCATTCTTAAAACATCTTTCCTTAGACCAAAACCAACGCAAACTAGCAAAAGGTACTAGAGTAACTGGTCCAGTACACACTGTGCTACAATTGAGCGTAGGGAGGAGGTATAATTTCTGCAAAATGTATAAAACAAAACTACAACAAACTAATTACTTGCAATCCA ]
[+] EMBL BM595826 [ ccgCATTCTTAAAACATCTTTCCTTAGACCAAAACCAACGCAAACTAGCAAAAGGTACTAGAGTAACTGGTCCAGTACACACTGTGCTACAATTGAGCGTAGGGAGGAGGTATAATTTCTGCAAAATGTATAAAACAAAACTAAAACAAACTAATTACTTGCAATCCATTCTAAAGCACGAAAACTCCTCAAAATAAAAACGGGAAGTAAACAAAAAAATCAGAACGAACAAATTTACCTAAAAAAAAGTAAACAAAAACAAAACAAAAAAGCCTACTAACCTTACTAATCCCATTGGATTGTCGCGAACCCGTTGGAGCAAAAGCGTAAGATAAAGATAAGGAAGTTAAAAGCAAAACTGAAATCAAAA ACACACACACACACACACACACACACACACACACACACAAACTACACAAATACACCTAAGCGAAACACCTGCAACAACAGCAAGAACAACAAGGAAAAACCCACAAATACTATCAACAATCAATTAGATGTAACTAAAGAAACTAG ]
[+] EMBL BM628157 [ cCGAAAACTCCTCAAAATAAAAACGGGAAGTAAACAAAAAAATCAGAACGAACAAATTTACCTAAAAAAAAGTAAACAAAAACAAAACAAAAAAGCCTACTAACCTTACTAATCCCATTGGATTGTCGCGAACCCGTTGGAGCAAAAGCGTAAGATAAAGATAAGGAAGTTAAAAGCAAAACTGAAATCAAAAACACACACACACACACACACACACACACACACACACACACAAACTACACAAATACACCTAAGCGAAACACCTGCAACAACAGCAAGAACAACAAGGAAAAACCCACAAATACTATCAACAATC ATTAGATGTAACTAAAGAAACTAGAAGAAAGAGAGAAAAAGAAAACATTTAGGCCGAGGCCGAGGCGCAAAAGGAAAATTGCCAAGCACACAAAAAACAAACAAAAAACAGATTAGGTTACAAAAGAGAACAGAAACTGTCGAGCAATGCGTCGCGCGAGTACATTTTCTACTTTCACGTTCTTCACACCGCTGATGGAAGCAAACAAATGAACGGAACGCGGGAAGGGAATAGACAACAACACATCGCCGGAACGATCCGGGGCCCGGTGGTGGATGAAAGATTAGAGTTTAGCCCTTTAGCCGAGACTCTCTGCACTGCTGCAGCAAGGAGAGCAAGTTTTCCAACATACATTTTCCCTG]
consensusID : consensus_6273#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 776 fasta sequence
[GCAGAACCCACGATTNAATGTTAACTTACTATATGAATATACATCTAGACGCATATATACGCATGAACTACTACTTCCCTCGTGTTCTGACAAAACACATTACCTTGTCCCCCCTCCCCCTCCGGTTTGCTATACCACCACTGCACCACCAGTATGAATTTGTATCCATAATAACGCTTCGTAACTCGTTACCAGGAGCACAACTGGGTCGTTGGCGGAGTGCTGCGCGTTTCGTGCTGAAGATGTAAACTAGCACCGCGCACACTTTCGACACGCAACCACAGCTACACATCACGAAAGCAACATCCTGGCCCTATCCGTTTTCTCATTCTTAAAACTTCTTTCCTTAGACCAAAACCAACGCAAACTAGCAAAAGGTACTTGAGTAACCGGTCCAGTACACACTGTGCTACAATTGAGCGTAGGGAGGAGGTATAATTTCTGCAAAATGTATAANACAAAACTAAAACAAACTAATTACTTGCAATCCATTCTAAAGCCACGAAAACTCCTCAAAATACAAACGGGAAGTAAACAAAAAAATCAGAACGCAACAAATTCTACCTACACAAACCAAAGTAAACAAACACACAAACAAACAAAGGCCCTACTAAACCCTTACTAATCCCAATCGGCATAGTCGCGAACCCCGTCTGGGCACGCCACAANACGCGTACCGCANTACACGATCAAGGAACGTNACACAACGCCNACACACTGACAACTCAANAAACACCACACACCACAACACNCAAAACAATACACAAAGGTAAAAG]
[+] EMBL AL692745 [GCAGAACCCACGATTNAATGTTAACTTACTATATGAATATACATCTAGACGCATATATACGCATGAACTACTACTTCCCTCGTGTTCTGACAAAACACATTACCTTGTCCCCCCTCCCCCTCCGGTTTGCTATACCACCACTGCACCACCAGTATGAATTTGTATCCATAATAACGCTTCGTAACTCGTTACCAGGAGCACAACTGGGTCGTTGGCGGAGTGCTGCGCGTTTCGTGCTGAAGATGTAAACTAGCACCGCGCACACTTTCGACACGCAACCACAGCTACACATCACGAAAGCAACATCCTGGCCCTATCCGTTTTCTCATTCTTAAAACTTCTTTCCTTAGACCAAAACCAACGCAAACTAGCAAAAGGTACTTGAGTAACCGGTCCAGTACACACTGTGCTACAATTGAGCGTAGGGAGGAGGTATAATTTCTGCAAAATGTATAANACAAAACTAAAACAAACTAATTACTTGCAATCCATTCTAAAGCCACGAAAACTCCTCAAAATACAAACGGGAAGTAAACAAAAAAATCAGAACGCAACAAATTCTACCTACACAAACCAAAGTAAACAAACACACAAACAAACAAAGGCCCTACTAAACCCTTACTAATCCCAATCGGCATAGTCGCGAACCCCGTCTGGGCACGCCACAANACGCGTACCGCANTACACGATCAAGGAACGTNACACAACGCCNACACACTGACAACTCAANAAACACCACACACCACAACACNCAAAACAATACACAAAGGTAAAAG]
consensusID : consensus_6273#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 654 fasta sequence
[CCGCAAAACTAAAACAAACTAATTACTTGCAATCCATTCTAAAGCACGAAAACTCCTCAAAATAAAAACGGGAAGTAAACAAAAAAATCAGAACGAACAAATTTACCTAAAAAAAAGTAAACAAAAACAAAACAAAAAAGCCTACTAACCTTACTAATCCCATTGGATTGTCGCGAACCCGTTGGAGCAAAAGCGTAAGATAAAGATAAGGAAGTTAAAAGCAAAACTGAAATCAAAAACACACACACACACACAAACTACACAAATACACCTAAGCGAAACACCTGCAACAACAGCAAGAACAACAAGGAAAAACCCACAAATACTATCAACAATCAATTAGATGTAACTAAAGAAACTAGAAGAAAGAGAGAAAAAGAAAACATTTAGGCCGAGGCCGAGGCGCAAAAGGAAAATTGCGAAGCACACAAAAACAAACAAAAAAACAGATTAGGTTACAACAGAAAACCAAAACTGTCGAGCAAAGCGTCGCGCGAGTACATTTTCTACTTTCACGTTCTTCAGACCGCTGATGGAAGCAAACAAATGAACGGTACGCGGGAAGGGAATAGACAACAACACATCGCCGGAACGATCCGGGGACCGGTGTTGGATGAAAGTTTAGAGTTTAGTCCTTTAGCCGAGACTCTCTGC]
[+] EMBL BM650964 [CCGCAAAACTAAAACAAACTAATTACTTGCAATCCATTCTAAAGCACGAAAACTCCTCAAAATAAAAACGGGAAGTAAACAAAAAAATCAGAACGAACAAATTTACCTAAAAAAAAGTAAACAAAAACAAAACAAAAAAGCCTACTAACCTTACTAATCCCATTGGATTGTCGCGAACCCGTTGGAGCAAAAGCGTAAGATAAAGATAAGGAAGTTAAAAGCAAAACTGAAATCAAAAACACACACACACACACAAACTACACAAATACACCTAAGCGAAACACCTGCAACAACAGCAAGAACAACAAGGAAAAACCCACAAATACTATCAACAATCAATTAGATGTAACTAAAGAAACTAGAAGAAAGAGAGAAAAAGAAAACATTTAGGCCGAGGCCGAGGCGCAAAAGGAAAATTGCGAAGCACACAAAAACAAACAAAAAAACAGATTAGGTTACAACAGAAAACCAAAACTGTCGAGCAAAGCGTCGCGCGAGTACATTTTCTACTTTCACGTTCTTCAGACCGCTGATGGAAGCAAACAAATGAACGGTACGCGGGAAGGGAATAGACAACAACACATCGCCGGAACGATCCGGGGACCGGTGTTGGATGAAAGTTTAGAGTTTAGTCCTTTAGCCGAGACTCTCTGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6273#0 CCGACCGTTTCATGGGCAGTTGCTGGAATACACCACGACCCGTACACACAGTAACACACT 60
consensus_6273#2 ------------------------------------------------------------
consensus_6273#1 ------------------------------------------------------------
consensus_6273#0 TCTTATAGCTTTACACTAACAACCACTCTCCTCACGCTCCTCTTCCCCTTCCCCTCCACA 120
consensus_6273#2 ------------------------------------------------------------
consensus_6273#1 ------------------------------------------------------------
consensus_6273#0 CAGACAGCAGCGCCGTTTGTAGCAGGATCTACTACCGTGCGGTTTGGTATGGCGGCCAAT 180
consensus_6273#2 ------------------------------------------------------------
consensus_6273#1 ------------------------------------------------------------
consensus_6273#0 CAACACTAAACACCACACATCTACTAAAACACACCGGAACAATAAACAAATGTTAAACTT 240
consensus_6273#2 ------------------------------------------------------------
consensus_6273#1 ------------------------------------------------------------
consensus_6273#0 ACTATATGAATATACATCTAGACGCATATATACGCATGAACTACTACTTCCCTCGTGTTC 300
consensus_6273#2 ------------------------------------------------------------
consensus_6273#1 ------------------------------------------------------------
consensus_6273#0 TGACAAAACACATTACCTTGTCCCCCCCCCCCTCCCTCCGGTTTGCTTACCACCACTGCA 360
consensus_6273#2 ------------------------------------------------------------
consensus_6273#1 ------------------------------------------------------------
consensus_6273#0 CCACCAGTATGAATTTGTTCCATAATAACGCTTCGTAACTCGTTACCAGGAGCACAACTG 420
consensus_6273#2 ------------------------------------------------------------
consensus_6273#1 ------------------------------------------------------------
consensus_6273#0 GGTCGTTGGCGGAGTGCTGCGCGTTACGTGCTGAAGATATAAACTAGCACCGCGCACACT 480
consensus_6273#2 ------------------------------------------------------------
consensus_6273#1 ------------------------------------------------------------
consensus_6273#0 TTCGACACGCAACCACAGCTACACATCACAAAAGCAACATCCTGGCCCTATCCGTTTTCT 540
consensus_6273#2 ------------------------------------------------------------
consensus_6273#1 ------------------------------------------------------------
consensus_6273#0 CATTCTTAAAACATCTTTCCTTAGACCAAAACCAACGCAAACTAGCAAAAGGTACTAGAG 600
consensus_6273#2 ------------------------------------------------------------
consensus_6273#1 ------------------------------------------------GCAGAACCCACG 12
consensus_6273#0 TAACTGGTCCAGTACACACTGTGCTACAATTGAGCGTAGGGAGGAGGTATAATTTCTGCA 660
consensus_6273#2 ------------------------------------------------------------
consensus_6273#1 ATTNAATGTTAACTTACTATATGAATATACATCTAGACGCATATATACGCATGAACTACT 72
consensus_6273#0 AAATGTATAAAACAAAACTACAACAAACTAATTACTTGCAATCCATTCTAAAGCACGAAA 720
consensus_6273#2 ---------CCGCAAAACTAAAACAAACTAATTACTTGCAATCCATTCTAAAGCACGAAA 51
consensus_6273#1 ACTTCCCTCGTGTTCTGACAAAACACATTACCTTGTCCCCCCTCCCCCTCCGGTTTGCTA 132
* **** * ** * * * * ** * * *
consensus_6273#0 ACTCCTCAAAATAAAAACGGGAAGTAAACAAAAAAATCAGAACGAACA--AATTTACCTA 778
consensus_6273#2 ACTCCTCAAAATAAAAACGGGAAGTAAACAAAAAAATCAGAACGAACA--AATTTACCTA 109
consensus_6273#1 TACCACCACTGCACCACCAGTATGAATTTGTATCCATAATAACGCTTCGTAACTCGTTAC 192
* ** * * * * * * * * ** * **** ** *
consensus_6273#0 AAAAAAAGTAAACAAAAACAAAACAAAAAAGCCTACTAACCTTACTAATCCCATTGGATT 838
consensus_6273#2 AAAAAAAGTAAACAAAAACAAAACAAAAAAGCCTACTAACCTTACTAATCCCATTGGATT 169
consensus_6273#1 CAGGAGCACAACTGGGTCGTTGGCGGAGTGCTGCGCGTTTCGTGCTGAAGATGTAAACTA 252
* * ** * * * * * ** * * *
consensus_6273#0 GT--CGCGAACCCGTTGGAGCAAAAGCGTAAGATAAAGATAAGGAAGTTAAAAGCAAAAC 896
consensus_6273#2 GT--CGCGAACCCGTTGGAGCAAAAGCGTAAGATAAAGATAAGGAAGTTAAAAGCAAAAC 227
consensus_6273#1 GCACCGCGCACACTTTCGACACGCAACCACAGCTACACATCACGAAAGCAACATCCTGGC 312
* **** ** * ** ** * * ** ** * ** * *** ** * * *
consensus_6273#0 TGAAATCAAAAACACACACACACACACACACAC---ACACACACACACACACAAACTACA 953
consensus_6273#2 TGAAATCAAAAACACA-------------------------CACACACACACAAACTACA 262
consensus_6273#1 CCTATCCGTTTTCTCATTCTTAAAACTTCTTTCCTTAGACCAAAACCAACGCAAACTAGC 372
* * * ** * ** ** *******
consensus_6273#0 CAAATACACCTAAGCGAAACACCTGCAACAACAGCAAGAACAACAAGGAAAAACCCACAA 1013
consensus_6273#2 CAAATACACCTAAGCGAAACACCTGCAACAACAGCAAGAACAACAAGGAAAAACCCACAA 322
consensus_6273#1 AAAAGGTACTTGAGTAACCGGTCCAGTACACACTGTGCTACAATTGAGCGTAGGGAGGAG 432
*** ** * ** * * *** **** * * *
consensus_6273#0 ATACTATCAACAATCAATTAGATGTAACTAAAGAAACTAGAAGAAAGAGAGAAAAAGAAA 1073
consensus_6273#2 ATACTATCAACAATCAATTAGATGTAACTAAAGAAACTAGAAGAAAGAGAGAAAAAGAAA 382
consensus_6273#1 GTATAATT-----TCTGCAAAATGTATAANACAAAACTAAAACAAACTAATTACTTGCAA 487
** ** ** * ***** * ****** ** *** * * * **
consensus_6273#0 ACA--TTTAGGCCGAGGCCGAGGCGCAAAAGGAAAATTGCCAAGCACACAAAAAACAAAC 1131
consensus_6273#2 ACA--TTTAGGCCGAGGCCGAGGCGCAAAAGGAAAATTGCGAAGCACACAAAAACAAACA 440
consensus_6273#1 TCCATTCTAAAGCCACGAAAACTCCTCAAAATACAAACGGGAAGTAAACAAAAA--AATC 545
* * ** * * * * * *** * ** * *** * ******* **
consensus_6273#0 AAAAAACAGATTAGGTTACAAAAGAGAACAGAAACTGTCGAGCAATGCGTCGCGCGAGTA 1191
consensus_6273#2 AAAAAACAGATTAGGTTACAACAGAAAACCAAAACTGTCGAGCAAAGCGTCGCGCGAGTA 500
consensus_6273#1 AGAACGCAACAAATTCTACCTACACAAACCAAAGTAAACAAACACACAAACAAACAAAGG 605
* ** ** * *** *** ** * * ** * * *
consensus_6273#0 CATT-TTCTACTTTCACGTTCTTCACACCGCTGATGGAAGCAAACAAATGAACGGAACGC 1250
consensus_6273#2 CATT-TTCTACTTTCACGTTCTTCAGACCGCTGATGGAAGCAAACAAATGAACGGTACGC 559
consensus_6273#1 CCCTACTAAACCCTTACTAATCCCAATCGGC--ATAGTCGCGAACCCCGTCTGGGCACGC 663
* * * ** * ** ** * ** ** * ** *** ** ****
consensus_6273#0 GGGAAGGGAATAGACAACAACACATCGCCGGAACGATCCGGGGCCCGGTGGTGGA-TGAA 1309
consensus_6273#2 GGGAAGGGAATAGACAACAACACATCGCCGGAACGATCCGGGGACCGGTGTTGGA-TGAA 618
consensus_6273#1 CACAANACG-CGTACCGCANTACACGATCAAGGAACGTNACACAACGCCNACACACTGAC 722
** ** ** *** * ** * ***
consensus_6273#0 AGATTAGAGTTTAGCCCTTTAGCCGAGACTCTCTGCACTGCTGCAGCAAGGAGAGCAAGT 1369
consensus_6273#2 AGTTTAGAGTTTAGTCCTTTAGCCGAGACTCTCTGC------------------------ 654
consensus_6273#1 AACTCAANAAACACCACACACCACAACACNCAAAACAATACACAAAGGTAAAAG------ 776
* * * * * * * ** * *
consensus_6273#0 TTTCCAACATACATTTTCCCTG 1391
consensus_6273#2 ----------------------
consensus_6273#1 ----------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||