cluster # 6277

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Anopheles gambiae
cluster # 6277 cluster # 6277 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6277#0 length = 1047 sequences # 4

consensus_6277#1 length = 564 sequences # 1

consensusID : consensus_6277#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1047
fasta sequence

                              [ACCATCGCCGGTGGTAGAGAAGCGCATGGTCGAGAAGGTGGTCACCTCCAAGCGAAAGATGTCCCCTCCGATGCACAAAGCATCCGCGGCCAAACACAGGCGACACTCGAGCAGCTCCGGCTCCGGTTCGTCCGATTCGAGCGATTCCGGCTCGGAAAGCTCGTACTCCTCCAGCTCCTCCAGCTCGTCGCGCGGCGCTGGCAAGGGAAGAACGGCAAAGGTTCGCGCGTCGGAAAAATCCTCCAAATCAGCCAGCATGGGAAAGAAGGATTCAAAGAAGCACAGCGAGGGCAAGGGTGGCGGTGCGCAGGTGATACCGCCCTCGAGTGCGGCGATGGAGAAGGCGAATGCGGCCGCGTCGAAAAA-GTCGTCGCGCCGGGAAGAACTGCTGAAGCAGCTGCGAGCCGTCGAGGAAGCGATCGCCCGGAAGCGCACTAAGATATCATAAATCTCCTCTCCCGTTTACCCTCCCAACACCACCACCCTTTACTATTACCTACTACAACAACCCCGTTTCATCACCGCACGATCACAATCATCCACTTTCCGTCGATCCATCCCAATCTCCCGCGAGCTACACGATAAGAAAGAACAGTTTGATGTTTGGGTAAATGCGCCGCAG--ACCACACACATAGACAGGCACTACATATACACAGACTCCGTAAAACCCATTCCAGTATAAGAGGACGGAGATGTGACGAAAGGGGAGGAGGAACAGTGTCCCGTAAAATAAGGGAAGCGTTTCCCTTTCCCCTAATCAGCCTCCCCAATGCACCACCTGGAAAATGAACACAATTACGATTAAATTAAGCATAGGCCACAGCTAGGAAGCAACACCCCCGCGTTTTTTTCTCTTATTTTCATAACATTTTTATGTTGTTTTTTTTTTTCTTTCTCTCCTATGACAATGTGTCCCACACATGAAGATTTGCTAGTGGAGGAACTAGTGGGTGGGCGGTTAGAACGGCCGGC-CTAGATTTGCGGACGAATTAAATGTATTCTAATAAACGATGAAAGCGACAGGATTTAAATGTAAAAAAATATAAA]

[+] EMBL BX615877             [ACCATCGCCGGTGGTAGAGAAGCGCATGGTCGAGAAGGTGGTCACCTCCAAGCGAAAGATGTCCCCTCCGATGCACAAAGCATCCGCGGCCAAACACAGGCGACACTCGAGCAGCTCCGGCTCCGGTTCGTCCGATTCGAGCGATTCCGGCTCGGAAAGCTCGTACTCCTCCAGCTCCTCCAGCTCGTCGCGCGGCGCTGGCAAGGGAAGAACGGCAAAGGTTCGCGCGTCGGAAAAATCCTCCAAATCAGCCAGCATGGGAAAGAAGGATTCAAAGAAGCACAGCGAGGGAAAGGGTGGTGGTGCGCAGGTGATACCGCCCTCGAGTGCGGCGATGGAGAAGGCGAATGCGGCCGCGTCGAAAAA GTCGTCGCGCCGGGAAGAACTGCTGAAGCAGCTGCGAGCCGTCGAGGAAGCGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CNS08PGN             [                                                                                                                                                                              CTCCTCCAGCTCGTCGCGCGGCGCTGGCAAGGGAAGAACGGCAAAGGTTCGCGCGTCGGAAAAATCCTCCAAATCAGCCAGCATGGGAAAGAAGGATTCAAAGAAGCACAGCGAGGGCAAGGGTGGCGGTGCGCAGGTGATACCGCCCTCGAGTGCGGCGATGGAGAAGGCGAATGCGGCCGCGTCGAAAAACGTCGTCGCGCCGGCAAGAACTGCTGAAGCAGCTGCGAGCCGTCGAGGAAGCGATCGCCCGGAAGCGCACTAAGATATCATAAATCTCCTCTCCCGTTTACCCTCCCAACACCACCACCCTTTACTATTACCTACTACAACAACCCCGTTTCATCACCGCACGATCACAATCATCCACTTTCCGTCGATCCATCCCAATCTCCCGCGAGCTACACGATAAGAAAGAACAGTTTGATGTTTGGGTAAATGCGCCGCAG  ACCACACACATAGACAGGCACTACATATACACAGACTCCGTAAAACCCATTCCAGTATAAGAGGACGGAGATGTGACGAAAGGGGAGGAGGAACAGTGTCCCGTAAAATAAGGGAAGCGTTTCCCTTTCCCCTAATCAGCCTCCCCAATGCACCACCTGGAAAATGAACACAATTACGATTAAATTAAGCATAGGCCACAGCTAGGAAGCAACACCCCCGCGTTTTTTTCTCTTATTTTCATAACATTTTTATGTTGTTTTTTTTTTTCTTTCTCTCCTATGACAATGTGTCCCACACATGAAGATTTGCTAGTGGAGGAACTAGTGGGTGGGCGGTTAGAACGGCCGGC CTAGATTTGCGGACGAATTAAATGTATTCTAATAAACGATGAAAGCGACAGGATTTAAATGTAAAAAAATATAAA]
[-] EMBL CNS08PGO             [                                                                                                                                                                                                                  AACGGCAAAGGTTCGCGCGTCGGAAAAATCCTCCAAATCAGCCAGCATGGGAAAGAAGGATTCAAAGAAGAACAGCGAGGGCAAGGGTGGCGGTGCGCAGGTGATACCGCCCTCGAGTGCGGCGAGGGAGAAGGCGAATGCGGCCGCGTCGAAAAA GTCGTCGCGCCGGGAAGGACTGCTGAAGCAGCTGCGAGCCGTCGAGGAAGCGATCGCCCGGAAGCGCACTAAGATATCATAAATCTCCTCTCCCGTTTACCCTCCCAACACCACCACCCTTTACTATTACCTACTACAACAACCCCGTTTCATCACCGCACGATAACAATCATCCACTTTCCGTCGATCCATCCCAATCTCCCGCGAGCTACACGATAAGAAAGAACAGTTTGATGTTTGGGTAAATGCGCCGCAGGCACAAAAAACATAGACAGGCACTACATATACACAGACTCCGTAAAACCCATTCCAGTATAAGAGGACGGAGATGTGACGAAAGGGGAGGAGGAACAGTGTCCCGTAAAATAAGGGAAGCGTTTCCCTTTCCCCTAATCAGCCTCCCCAATGCACCACCTGGAAAATGAAGACAATTACGATTAAATTAAGCATAGGCCACAGCTAGGAAGCCACAGATACGCGTTTTTTTCTCTTATTTTCATAACATTTTTATGTTGTTTTTTTTTTTCTTTCTCTCCTATGACAATGTGTCCCACACATGAAGATTTGCTAGTGGAGGAACTAGTGGGTGGGCGGTTAGAACGGCCGGCTCTAGATTTGCGGACGAATTAAATGTATTCTAATAAACGATGA                                 ]
[-] EMBL CNS08OKR             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              AAGATTTGCTAGTGGAGGAAATAGTGGGTGGGCGGTTAGAACGGCCGGC CTAGATTTGCGGACGAATTAAATGTATTCTAATAAACGATGAAAGC                             ]




>consensus_6277#0
ACCATCGCCGGTGGTAGAGAAGCGCATGGTCGAGAAGGTGGTCACCTCCAAGCGAAAGAT
GTCCCCTCCGATGCACAAAGCATCCGCGGCCAAACACAGGCGACACTCGAGCAGCTCCGG
CTCCGGTTCGTCCGATTCGAGCGATTCCGGCTCGGAAAGCTCGTACTCCTCCAGCTCCTC
CAGCTCGTCGCGCGGCGCTGGCAAGGGAAGAACGGCAAAGGTTCGCGCGTCGGAAAAATC
CTCCAAATCAGCCAGCATGGGAAAGAAGGATTCAAAGAAGCACAGCGAGGGCAAGGGTGG
CGGTGCGCAGGTGATACCGCCCTCGAGTGCGGCGATGGAGAAGGCGAATGCGGCCGCGTC
GAAAAAGTCGTCGCGCCGGGAAGAACTGCTGAAGCAGCTGCGAGCCGTCGAGGAAGCGAT
CGCCCGGAAGCGCACTAAGATATCATAAATCTCCTCTCCCGTTTACCCTCCCAACACCAC
CACCCTTTACTATTACCTACTACAACAACCCCGTTTCATCACCGCACGATCACAATCATC
CACTTTCCGTCGATCCATCCCAATCTCCCGCGAGCTACACGATAAGAAAGAACAGTTTGA
TGTTTGGGTAAATGCGCCGCAGACCACACACATAGACAGGCACTACATATACACAGACTC
CGTAAAACCCATTCCAGTATAAGAGGACGGAGATGTGACGAAAGGGGAGGAGGAACAGTG
TCCCGTAAAATAAGGGAAGCGTTTCCCTTTCCCCTAATCAGCCTCCCCAATGCACCACCT
GGAAAATGAACACAATTACGATTAAATTAAGCATAGGCCACAGCTAGGAAGCAACACCCC
CGCGTTTTTTTCTCTTATTTTCATAACATTTTTATGTTGTTTTTTTTTTTCTTTCTCTCC
TATGACAATGTGTCCCACACATGAAGATTTGCTAGTGGAGGAACTAGTGGGTGGGCGGTT
AGAACGGCCGGCCTAGATTTGCGGACGAATTAAATGTATTCTAATAAACGATGAAAGCGA
CAGGATTTAAATGTAAAAAAATATAAA

consensusID : consensus_6277#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 564
fasta sequence

                              [CGNGGTTTNTTTTNTGNTGCCGGGAAGAACTGCTGAANTAGCTGCGAGCCGTCGAGGAAGCGATCGCCCGGAAGCGCACTAAGATATCATAAATCTCCTATACCCGTTTACCCTCCCAAACACCACCTTTACTATTACCTACTACAACAAACCCCGGTATTCATCACCTGCGACGATCACAATCATCCACTTATACCGTCGATCCATCNCCAATACTCCCGCGAGCTACACGATAAGAAAGAACAGTTTGATGTATTAGGGTAAATGTTGCCGCAGGCACCACACACAATAGAACAGGCACTACATATACAACAGACTCCGTAAAACCATTCCAGTATAACGAGGACGGACGACTGTGACGANAGTGGGACGGAGGAACAGTGTCCCGTAAAGTCAAGGAAGCGTTTCCCTTTCCCCTAATCAGCCCCCCAATGCCACCACTGGCAAAATGAACACACATTTACGATTNAACTTNAAGCANTATGGCACAGCGTAGGAAGCCAACCAGATACGCGTTAAACTCTCTATCTTANCATAACCATANATAAAAGTAAGGAGATATGA]

[+] EMBL AL694351             [CGNGGTTTNTTTTNTGNTGCCGGGAAGAACTGCTGAANTAGCTGCGAGCCGTCGAGGAAGCGATCGCCCGGAAGCGCACTAAGATATCATAAATCTCCTATACCCGTTTACCCTCCCAAACACCACCTTTACTATTACCTACTACAACAAACCCCGGTATTCATCACCTGCGACGATCACAATCATCCACTTATACCGTCGATCCATCNCCAATACTCCCGCGAGCTACACGATAAGAAAGAACAGTTTGATGTATTAGGGTAAATGTTGCCGCAGGCACCACACACAATAGAACAGGCACTACATATACAACAGACTCCGTAAAACCATTCCAGTATAACGAGGACGGACGACTGTGACGANAGTGGGACGGAGGAACAGTGTCCCGTAAAGTCAAGGAAGCGTTTCCCTTTCCCCTAATCAGCCCCCCAATGCCACCACTGGCAAAATGAACACACATTTACGATTNAACTTNAAGCANTATGGCACAGCGTAGGAAGCCAACCAGATACGCGTTAAACTCTCTATCTTANCATAACCATANATAAAAGTAAGGAGATATGA]




>consensus_6277#1
CGNGGTTTNTTTTNTGNTGCCGGGAAGAACTGCTGAANTAGCTGCGAGCCGTCGAGGAAG
CGATCGCCCGGAAGCGCACTAAGATATCATAAATCTCCTATACCCGTTTACCCTCCCAAA
CACCACCTTTACTATTACCTACTACAACAAACCCCGGTATTCATCACCTGCGACGATCAC
AATCATCCACTTATACCGTCGATCCATCNCCAATACTCCCGCGAGCTACACGATAAGAAA
GAACAGTTTGATGTATTAGGGTAAATGTTGCCGCAGGCACCACACACAATAGAACAGGCA
CTACATATACAACAGACTCCGTAAAACCATTCCAGTATAACGAGGACGGACGACTGTGAC
GANAGTGGGACGGAGGAACAGTGTCCCGTAAAGTCAAGGAAGCGTTTCCCTTTCCCCTAA
TCAGCCCCCCAATGCCACCACTGGCAAAATGAACACACATTTACGATTNAACTTNAAGCA
NTATGGCACAGCGTAGGAAGCCAACCAGATACGCGTTAAACTCTCTATCTTANCATAACC
ATANATAAAAGTAAGGAGATATGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6277#0      ACCATCGCCGGTGGTAGAGAAGCGCATGGTCGAGAAGGTGGTCACCTCCAAGCGAAAGAT 60
consensus_6277#1      ------------------------------------------------------------
                                                                                  

consensus_6277#0      GTCCCCTCCGATGCACAAAGCATCCGCGGCCAAACACAGGCGACACTCGAGCAGCTCCGG 120
consensus_6277#1      ------------------------------------------------------------
                                                                                  

consensus_6277#0      CTCCGGTTCGTCCGATTCGAGCGATTCCGGCTCGGAAAGCTCGTACTCCTCCAGCTCCTC 180
consensus_6277#1      ------------------------------------------------------------
                                                                                  

consensus_6277#0      CAGCTCGTCGCGCGGCGCTGGCAAGGGAAGAACGGCAAAGGTTCGCGCGTCGGAAAAATC 240
consensus_6277#1      ------------------------------------------------------------
                                                                                  

consensus_6277#0      CTCCAAATCAGCCAGCATGGGAAAGAAGGATTCAAAGAAGCACAGCGAGGGCAAGGGTGG 300
consensus_6277#1      ------------------------------------------------------------
                                                                                  

consensus_6277#0      CGGTGCGCAGGTGATACCGCCCTCGAGTGCGGCGATGGAGAAGGCGAATGCGGCCGCGTC 360
consensus_6277#1      --------------------------------------------------------CGNG 4
                                                                              **  

consensus_6277#0      GAAAAAGTCGTCGCGCCGGGAAGAACTGCTGAAGCAGCTGCGAGCCGTCGAGGAAGCGAT 420
consensus_6277#1      GTTTNTTTTNTGNTGCCGGGAAGAACTGCTGAANTAGCTGCGAGCCGTCGAGGAAGCGAT 64
                      *      *  *   *******************  *************************

consensus_6277#0      CGCCCGGAAGCGCACTAAGATATCATAAATCTCCTCT-CCCGTTTACCCTCCCAACACCA 479
consensus_6277#1      CGCCCGGAAGCGCACTAAGATATCATAAATCTCCTATACCCGTTTACCCTCCCAAA--CA 122
                      *********************************** * *****************   **

consensus_6277#0      CCACCCTTTACTATTACCTACTACAACAA-CCCCGTT--TCATCACC-GC-ACGATCACA 534
consensus_6277#1      CCACC-TTTACTATTACCTACTACAACAAACCCCGGTATTCATCACCTGCGACGATCACA 181
                      ***** *********************** ***** *  ******** ** *********

consensus_6277#0      ATCATCCACTTT--CCGTCGATCCATCCC-AAT-CTCCCGCGAGCTACACGATAAGAAAG 590
consensus_6277#1      ATCATCCACTTATACCGTCGATCCATCNCCAATACTCCCGCGAGCTACACGATAAGAAAG 241
                      ***********   ************* * *** **************************

consensus_6277#0      AACAGTTTGATGTTT--GGGTAAATGC-GCCGCAG--ACCACACACA-TAGA-CAGGCAC 643
consensus_6277#1      AACAGTTTGATGTATTAGGGTAAATGTTGCCGCAGGCACCACACACAATAGAACAGGCAC 301
                      ************* *  *********  *******  ********** **** *******

consensus_6277#0      TACATATACA-CAGACTCCGTAAAACCCATTCCAGTATAA-GAGGACGGAGA--TGTGAC 699
consensus_6277#1      TACATATACAACAGACTCCGTAAAACC-ATTCCAGTATAACGAGGACGGACGACTGTGAC 360
                      ********** **************** ************ *********    ******

consensus_6277#0      GAAAGGGGA--GGAGGAACAGTGTCCCGTAAAATAAGGGAAGCGTTTCCCTTTCCCCTAA 757
consensus_6277#1      GANAGTGGGACGGAGGAACAGTGTCCCGTAAAGTCAAGGAAGCGTTTCCCTTTCCCCTAA 420
                      ** ** **   ********************* * * ***********************

consensus_6277#0      TCAGCCTCCCCAATGCACCACCTGGAAAATGAACACAA--TTACGATTAAA--TTAAGCA 813
consensus_6277#1      TCAGCCCCCCAATGCCACCACTGGCAAAATGAACACACATTTACGATTNAACTTNAAGCA 480
                      ****** *** *   ******  * ************   ******** **  * *****

consensus_6277#0      T-AGGCCACAGC-TAGGAAGCAACACCCCCGCGTTTTTTTCTCTTATTTTCATAACATTT 871
consensus_6277#1      NTATGGCACAGCGTAGGAAGCCAACCAGATACGCGTTAAACTCTCTATCTTANCATAACC 540
                        * * ****** ******** *  *     **  **   ****   * * *  * *   

consensus_6277#0      TTATGTTGTTTTTTTTTTTCTTTCTCTCCTATGACAATGTGTCCCACACATGAAGATTTG 931
consensus_6277#1      ATANATAAAAGTAAGGAGATATGA------------------------------------ 564
                       **  *     *         *                                      

consensus_6277#0      CTAGTGGAGGAACTAGTGGGTGGGCGGTTAGAACGGCCGGCCTAGATTTGCGGACGAATT 991
consensus_6277#1      ------------------------------------------------------------
                                                                                  

consensus_6277#0      AAATGTATTCTAATAAACGATGAAAGCGACAGGATTTAAATGTAAAAAAATATAAA 1047
consensus_6277#1      --------------------------------------------------------