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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6283#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1367 fasta sequence
[AACGGGAGTGCGAAAGCGCTTAATCGGTTCCATTTTTATTTTCTGGTGCAGCTAATCTTTAATTACGTGTACAGATTTTAACGTACGTAGGCAAAGGTCTTGAAGAGCTCAAAATGGGAGTGCCAAAG-TTTTTCCGCTACATGAGCGAAAGGTATCCTTGCTTAAGC-GAGCTGCTGAGGGAAAACCAGGTGCCCGAATTCGACAACTTGTATTTGGATATGAACGGAATCATACACAACTGCTCCCACCCGAACGATGCGGACGTGCACTTTCGGATTTCGGAGGAAATGATTTTTGAAGGCATCTTTCACTACGTGGAGTATCTGTTCAAACTGATTCGACCGCAGCAAGTGTTCTTCATCGCTGTCGACGGTGTGGCACCGCGCGCTAAAATGAACC-AACAGCGTGGACGTCGCTTCCGTTCGGCGGCTGAGGCTCAGGACCTGCTAGAAAAGGCTAAGGCGAAGGGAGAGGAGATCTCTTCGGAAAGCCCGTTTGACAGCAACTGCATAACACCGGGAACTAGTTTTATGGTTAGGCTGCAGAATGCTCTGCAACACTTCATACAGGTGAAAATAGCGACCGATCGTCTGTGGAAAGCTTGTACGGTCATCCTCAGTGGTCACGAGACGCCAGGCGAGGGAGAACACAAAATAATGGAGTACATCAGGCACGCGAAGGCTCAGCCCGGGTTTAACCCAAACACGCGACACTGTCTGTATGGCTTGGACGCGGATTTAATCATGCTTGGACTGTGCACACACGAGCGCTACTTCTCGCTCCTAAGGGAAGAAGTCAAATTTGGCAAAAATGACAAAAAAACGTCAAATTTAAAAGAGATCCGGTTCTACTTGCTTCATCTGACGCTACTTAGTGAATATCTTGAACTGGAATTCGCCAGCGTTCGCGATCGGCTGCGGTTCCCGTTCGACATTCATAAGCTCATCGACGACTGGATACTGCTGGTGTATTTGGTGGGGAATGATTTCATTCCTCATATGCCACACCTGCACATCAACGAAAATGCGCTTCCAACACTGTATGAAGCTTACATGGACGTATTGCCGAACATGGATGGCTACATAAACGAGGCTGGCATATTGAACTTACCTCGGCTGCAAATGCTTATGAGACGGCTTGCTAATTTCGATCGGGATATGTTTCTCGATCGCTACACCGACCTAAAGTATTTGGAGGGAAAGTGCGGCAAAAATAACTTGGATGCTTTTGACGTCGACGCGAATGAGATAATCGGGGCGAGCGAGATGGACAAGGACTTGATGGCACTGATTATGTCATCGGAAATGCTGGACTCCGAGGGAGAAGACAATGCAGCACCGGTGACGCTGGGGACATCGAAAATGACC]
[+] EMBL CNS08LZI [AACGGGAGTGCGAAAGCGCTTAATCGGTTCCATTTTTATTTTCTGGTGCAGCTAATCTTTAATTACGTGTACAGATTTTAACGTACGTAGGCAAAGGTCTTGAAGAGCTCAAAATGGGAGTGCCAAAG TTTTTCCGCTACATGAGCGAAAGGTATCCTTGCTTAAGC GAGCTGCTGAGGGAAAACCAGGTGCCCGAATTCGACAACTTGTATTTGGATATGAACGGAATCATACACAACTGCTCCCACCCGAACGATGCGGACGTGCACTTTCGGATTTCGGAGGAAATGATTTTTGAAGGCATCTTTCACTACGTGGAGTATCTGTTCAAACTGATTCGACCGCAGCAAGTGTTCTTCATCGCTGTCGACGGTGTGGCACCGCGCGCTAAAATGAACC AACAGCGTGGACGTCGCTTCCGTTCGGCGGCTGAGGCTCAGGACCTGCTAGAAAAGGCTAAGGCGAAGGGAGAGGAGATCTCTTCGGAAAGCCCGTTTGACAGCAACTGCATAACACCGGGAACTAGTTTTATGGTTAGGCTGCAGAATGCTCTGCAACACTTCATACAGGTGAAAATAGCGACCGATCGTCTGTGGAAAGCTTGTACGGTCATCCTCAGTGGTCACGAGACGCCAGGCGAGGGAGAACACAAAATAATGGAGTACATCAGGCACGCGAAGGCTCAGCCCGGGTTTAACCCAAACACGCGACACTGTCTGTATGGCTTGGACGCGGATTTAATCATGCTTGGACTGTGCACACACGAGCGCTACTTCTCGCTCCTAAGGGAAGAAGTCAAATTTGGCAAAAATGACAAAAAAACGTCAAATTTAAAAGAGATCCGGTTCTACTTGCTTCATCTGACGCTACTTAGTGAATATCTTGAACTGGAATTCGCCAGCGTTCGCGATCGGCTGCGGTTCCCGTTCGACATTCATAAGCTCATCGACGACTGGATACTGCTGGTGTATTTGGTGGGGAATGATTTCATTCCTCATATGCCACACCTGCACA ]
[+] EMBL CNS08I6Z [ TCGGTTCCATTTTTATTTTCTGGTGCAGCTAATCTTTAATTACGTGTACAGATTTTAACGTACGTAGGCAAAGGTCTTGAAGAGCTCAAAATGGGAGTGCCAAAGCTTTTTCCGCTACATGAGCGAAAGGTATCCTTGCTTAAGCGGAGCTGCTGAGGGAAAACCAGGTGCCCGAATTCGACAACTTGTATTTGGATATGAACGGAATCATACACAACTGCTCCCACCCGAACGATGCGGACGTGCACTTTCGGATTTCGGAGGAAATGATTTTTGAAGGCATCTTTCACTACGTGGAGTATCTGTTCAAACTGATTCGACCGCAGCAAGTGTTCTTCATCGCTGTCGACGGTGTGGCACCGCGCGCTAAAATGAACC AACAGCGTGGACGTCGCTTCCGTTCGGCGGCTGAGGCTTTGGACCTGCTAGAAAAGGCTAAGGCGAAGGGAGAGGAGATCTCTTCGGAAAGCCCGTTTGACAGCAACTGCATAACACCGGGAACTAGTTTTATGGTTAGGCTGCAGAATGCTCTGCAACACTTCATACAGGTGAAAATAGCGACCGATCGTCTGTGGAAAGCTTGTACGGTCATCCTCAGTGGTCACGAGACGCCAGGCGAGGGAGAACACAAAATAATGGAGTACATCAGGCACGCGAAGGCTCAGCCCGGGTTTAACCCAAACACGCGACACTGTCTAAAAAAATTGGACGCGGATTTAATCATGCTTGGACTGTGCACACACGAGCGCTACTTCTCGCTCCTTAGGGAAGAAGTCAAATTTGGCAAAAATGACAAAAAAACGTCAAATTTAAAAGAGATCCGGTTCTACTTGCTTCATCTGACGCTACTTAGTGAAT ]
[-] EMBL CNS08LZJ [ GACGGTGTGGCACCGCGCGCTAAAATGAACCAAACAGCGTGGACGTCGCTTCCGTTCGGCGGCTGAGGCTCAGGACCTGCTAGAAAAGGCTAAGGCGAAGGGAGAGGAGATCTCTTCGGAAAGCCCGTTTGACAGCAACTGCATAACACCGGGAACTAGTTTTATGGTTAGGCTGCAGAATGCTCTGCAACACTTCATACAGGTGAAAATAGCGACCGATCGTCTGTGGAAAGCTTGTACGGTCATCCTCAGTGGTCACGAGACGCCAGGCGAGGGAGAACACAAAATAATGGAGTACATCAGGCACGCGAAGGCTCAGCCCGGGTTTAACCCAAACACGCGACACTGTCTGTATGGCTTGGACGCGGATTTAATCATGCTTGGACTGTGCACACACGAGCGCTACTTCTCGCTCCTAAGGGAAGAAGTCAAATTTGGCAAAAATGACAAAAAAACGTCAAATTTAAAAGAGATCCGGTTCTACTTGCTTCATCTGACGCTACTTAGTGAATATCTTGAACTGGAATTCGCCAGCGTTCGCGATCGGCTGCGGTTCCCGTTCGACATTCATAAGCTCATCGACGACTGGATACTGCTGGTGTATTTGGTGGGGAATGATTTCATTCCTCATATGCCACACCTGCACATCAACGAAAATGCGCTTCCAACACTGTATGAAGCTTACATGGACGTATTGCCGAACATGGATGGCTACATAAACGAGGCTGGCATATTGAACTTACCTCGGCTGCAAATGCTTATGAGACGGCTTGCTAATTTCGATCGGGATATGTTTCTCGATCGCTACACCGACCTAAAGTATTTGGAGGGAAAGTGCGGCAAAAATAACTTGGATGCTTTTGACGTCGACGCGAATGAGATAATCGGGGCGAGCGAGATGGACAAGGACTTGATGGCACTGATTATGTCATCGGAAATGCTGGACTCCGAGGGAGAAGACAATGCAGCACCGGTGACGCTGGGGACATCGAAAATGACC]
[-] EMBL CNS08I70 [ TGAGGCTCAGGACCTGCTAGAAAAGGCTAAGGCGAAGGGAGAGGAGATCTCTTCGGAAAGCCCGTTTGACAGCAACTGCATAACACCGGGAACTAGTTTTATGGTTAGGCTGCAGAATGCTCTGCAACACTTCATACAGGTGAAAATAGCGACCGATCGTCTGTGGAAAGCTTGTACGGTCATCCCCAGTGGTCACGTTTTTTTTGGCGAGGGAGAACACAAAATAATGGAGTACATCAGGCACGCGAAGGCTCAGCCCGGGTTTAACCCAAACACGCGACACTGTCTGTATGGCTTGGACGCGGATTTAATCATGCTTGGACTGTGAACACACGAGCGCTACTTCTCGCTCCTAAGGGAAGAAGTCAAATTTGGCAAAAATGACAAAAAAACGTCAAATTTAAAAGAGATCCGGTTCTACTTGCTTCATCTGACGCTACTTAGTGAATATCTTGAACTGGAATTCGCCAGCGTTCGCGATCGGCTGCGGAACCCGTTCGACATTCATAAGCTCATCGACGACTGGATACTGCTGGTGTATTTGGTGGGGAATGATTTCATTCCTCATATGCCACACCTGCACATCAACGAAAATGCGCTTCCAACACTGTATGAAGCTTACATGGACGTATTGCCGAACATGGATGGCTACATAAACGAGGCTGGCATATTGAACTTACCTCGGCTGCAAATGCTTATGAGACGGCTTGCTAATTTCGATCGGGATATGTTTCTCGATCGCTACACCGACCTAAAGTATTTGGAGGGAAAGTGCGGCAAAAATAACTTGGATGCTTTTGACGTCGACGCGAATGAGATAATCGGGGCGAGCGAGATGGACAAGGACTTGATGGCACTGATTATGTCATCGGAAATGCTGGACTCCGAGGGAGGAGACAATGCAGCACCG ]
consensusID : consensus_6283#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 680 fasta sequence
[CCGCCCACGCGTCCGGAGAATTTTTTGTAGCTAAAATCATTCTATTGTATTGTTAAAAATATTTGTATGTAGGTGAAAACCTCGTTCGTGAGTCAGTTTTTAGTGATTTCTTGCAGTGTTTTTTAACCATAATATGATTTTTATCTGAAAAATGAGAACATAATCGGAATGGAAAAGCGTATTTTAACGTACGTAGGCAAAGGTCTTGAAGAGCTCAAAATGGGAGTGCCAAAGTTTTTCCGCTACATGAGCGAACGGTATCCTTGCTTAAGCGAGCTGCTGAGGGAAAACCAGGTGCCCGAATTCGACAACTTGTATTTGGATATGAACGGAATCATACACAACTGCTCCCACCCGAACGATGCGGACGTGCACTTTCGGATTTCGGAGGAAATGATTTTTGAAGGCATCTTTCACTACGTGGAGTATCTGTTCAAACTGATTCGACCGCAGCAAGTGTTCTTCATCGCTGTCGACGGTGTGGCACCGCGCGCTAAAATGAACCAACAGCGTGGACGTCGCTTCCGTTCGGCGGCTGAGGCTCAGGACCTGCTAGAAAAGGCTAAGGCGAAGGGAGAGGAGATCTCTTCGGAAAGCCCGTTTGACAGCAACTGCATAACACCGGGGACTAGCTTTATGGTTAGGCTGCAGAATGCTCTGCAACACTTCATACAGGTGAA]
[+] EMBL BM628289 [CCGCCCACGCGTCCGGAGAATTTTTTGTAGCTAAAATCATTCTATTGTATTGTTAAAAATATTTGTATGTAGGTGAAAACCTCGTTCGTGAGTCAGTTTTTAGTGATTTCTTGCAGTGTTTTTTAACCATAATATGATTTTTATCTGAAAAATGAGAACATAATCGGAATGGAAAAGCGTATTTTAACGTACGTAGGCAAAGGTCTTGAAGAGCTCAAAATGGGAGTGCCAAAGTTTTTCCGCTACATGAGCGAACGGTATCCTTGCTTAAGCGAGCTGCTGAGGGAAAACCAGGTGCCCGAATTCGACAACTTGTATTTGGATATGAACGGAATCATACACAACTGCTCCCACCCGAACGATGCGGACGTGCACTTTCGGATTTCGGAGGAAATGATTTTTGAAGGCATCTTTCACTACGTGGAGTATCTGTTCAAACTGATTCGACCGCAGCAAGTGTTCTTCATCGCTGTCGACGGTGTGGCACCGCGCGCTAAAATGAACCAACAGCGTGGACGTCGCTTCCGTTCGGCGGCTGAGGCTCAGGACCTGCTAGAAAAGGCTAAGGCGAAGGGAGAGGAGATCTCTTCGGAAAGCCCGTTTGACAGCAACTGCATAACACCGGGGACTAGCTTTATGGTTAGGCTGCAGAATGCTCTGCAACACTTCATACAGGTGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6283#0 ------------------------------------------------------------
consensus_6283#1 CCGCCCACGCGTCCGGAGAATTTTTTGTAGCTAAAATCATTCTATTGTATTGTTAAAAAT 60
consensus_6283#0 -----------------------------------------AACGGGAG--TGCGAAAGC 17
consensus_6283#1 ATTTGTATGTAGGTGAAAACCTCGTTCGTGAGTCAGTTTTTAGTGATTTCTTGCAGTGTT 120
* * ***
consensus_6283#0 GCTTAATCG--GTTCCATTTTTATTTTCTGG-TGCAGCTAATCTTTAATTACGTGTACAG 74
consensus_6283#1 TTTTAACCATAATATGATTTTTATCTGAAAAATGAGAACATAATCGGAATGGAAAAGCGT 180
**** * * ******** * ** * * * * *
consensus_6283#0 ATTTTAACGTACGTAGGCAAAGGTCTTGAAGAGCTCAAAATGGGAGTGCCAAAGTTTTTC 134
consensus_6283#1 ATTTTAACGTACGTAGGCAAAGGTCTTGAAGAGCTCAAAATGGGAGTGCCAAAGTTTTTC 240
************************************************************
consensus_6283#0 CGCTACATGAGCGAAAGGTATCCTTGCTTAAGCGAGCTGCTGAGGGAAAACCAGGTGCCC 194
consensus_6283#1 CGCTACATGAGCGAACGGTATCCTTGCTTAAGCGAGCTGCTGAGGGAAAACCAGGTGCCC 300
*************** ********************************************
consensus_6283#0 GAATTCGACAACTTGTATTTGGATATGAACGGAATCATACACAACTGCTCCCACCCGAAC 254
consensus_6283#1 GAATTCGACAACTTGTATTTGGATATGAACGGAATCATACACAACTGCTCCCACCCGAAC 360
************************************************************
consensus_6283#0 GATGCGGACGTGCACTTTCGGATTTCGGAGGAAATGATTTTTGAAGGCATCTTTCACTAC 314
consensus_6283#1 GATGCGGACGTGCACTTTCGGATTTCGGAGGAAATGATTTTTGAAGGCATCTTTCACTAC 420
************************************************************
consensus_6283#0 GTGGAGTATCTGTTCAAACTGATTCGACCGCAGCAAGTGTTCTTCATCGCTGTCGACGGT 374
consensus_6283#1 GTGGAGTATCTGTTCAAACTGATTCGACCGCAGCAAGTGTTCTTCATCGCTGTCGACGGT 480
************************************************************
consensus_6283#0 GTGGCACCGCGCGCTAAAATGAACCAACAGCGTGGACGTCGCTTCCGTTCGGCGGCTGAG 434
consensus_6283#1 GTGGCACCGCGCGCTAAAATGAACCAACAGCGTGGACGTCGCTTCCGTTCGGCGGCTGAG 540
************************************************************
consensus_6283#0 GCTCAGGACCTGCTAGAAAAGGCTAAGGCGAAGGGAGAGGAGATCTCTTCGGAAAGCCCG 494
consensus_6283#1 GCTCAGGACCTGCTAGAAAAGGCTAAGGCGAAGGGAGAGGAGATCTCTTCGGAAAGCCCG 600
************************************************************
consensus_6283#0 TTTGACAGCAACTGCATAACACCGGGAACTAGTTTTATGGTTAGGCTGCAGAATGCTCTG 554
consensus_6283#1 TTTGACAGCAACTGCATAACACCGGGGACTAGCTTTATGGTTAGGCTGCAGAATGCTCTG 660
************************** ***** ***************************
consensus_6283#0 CAACACTTCATACAGGTGAAAATAGCGACCGATCGTCTGTGGAAAGCTTGTACGGTCATC 614
consensus_6283#1 CAACACTTCATACAGGTGAA---------------------------------------- 680
********************
consensus_6283#0 CTCAGTGGTCACGAGACGCCAGGCGAGGGAGAACACAAAATAATGGAGTACATCAGGCAC 674
consensus_6283#1 ------------------------------------------------------------
consensus_6283#0 GCGAAGGCTCAGCCCGGGTTTAACCCAAACACGCGACACTGTCTGTATGGCTTGGACGCG 734
consensus_6283#1 ------------------------------------------------------------
consensus_6283#0 GATTTAATCATGCTTGGACTGTGCACACACGAGCGCTACTTCTCGCTCCTAAGGGAAGAA 794
consensus_6283#1 ------------------------------------------------------------
consensus_6283#0 GTCAAATTTGGCAAAAATGACAAAAAAACGTCAAATTTAAAAGAGATCCGGTTCTACTTG 854
consensus_6283#1 ------------------------------------------------------------
consensus_6283#0 CTTCATCTGACGCTACTTAGTGAATATCTTGAACTGGAATTCGCCAGCGTTCGCGATCGG 914
consensus_6283#1 ------------------------------------------------------------
consensus_6283#0 CTGCGGTTCCCGTTCGACATTCATAAGCTCATCGACGACTGGATACTGCTGGTGTATTTG 974
consensus_6283#1 ------------------------------------------------------------
consensus_6283#0 GTGGGGAATGATTTCATTCCTCATATGCCACACCTGCACATCAACGAAAATGCGCTTCCA 1034
consensus_6283#1 ------------------------------------------------------------
consensus_6283#0 ACACTGTATGAAGCTTACATGGACGTATTGCCGAACATGGATGGCTACATAAACGAGGCT 1094
consensus_6283#1 ------------------------------------------------------------
consensus_6283#0 GGCATATTGAACTTACCTCGGCTGCAAATGCTTATGAGACGGCTTGCTAATTTCGATCGG 1154
consensus_6283#1 ------------------------------------------------------------
consensus_6283#0 GATATGTTTCTCGATCGCTACACCGACCTAAAGTATTTGGAGGGAAAGTGCGGCAAAAAT 1214
consensus_6283#1 ------------------------------------------------------------
consensus_6283#0 AACTTGGATGCTTTTGACGTCGACGCGAATGAGATAATCGGGGCGAGCGAGATGGACAAG 1274
consensus_6283#1 ------------------------------------------------------------
consensus_6283#0 GACTTGATGGCACTGATTATGTCATCGGAAATGCTGGACTCCGAGGGAGAAGACAATGCA 1334
consensus_6283#1 ------------------------------------------------------------
consensus_6283#0 GCACCGGTGACGCTGGGGACATCGAAAATGACC 1367
consensus_6283#1 ---------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||