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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6285#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1225 fasta sequence
[CCGCTGCCCCCGGGGCTGGCCAACGGTACGTTCCAGTTCCGGGCGGAGA-GAGCGAAATTGGGTGCGTGCGGGAAAACATGACCGAGTTCAGCGGGAG-TTCAGTCTGCAGGCGGGCGGTGCGGTGAGCTACTTTATCAGCCGGAAGGGAGGCCGGAGCAGTCTGCTGGAGTACGCCGACACGGCTGCCAAGGACCGGAAC-GGCTGCCCCGGATGCGGCTGCTAGCGAACGTGCGGACGACTAAGCAGATCTCGCTGCGGCACAACGGGAACGCGGACGTCGTGTACAACGTGGCGCTCAACCAGTACGATCAGCTGACGTCGGTGACGGAGGGCGAGTACGGGGTGTACGTCGGGGAGCGTCCGATTGCCACCGTGAAGCTTAGCCCGGGCGGTGTCTACACGCTGATATTGGACGAGTTTTTGGAGAATGAGTTTAACCTTCAAACACACACGATCACCCCGTCCAACTCGGTGCACATGCTGTGGCTAATACCGCAGTACGTCGTCATAACGGCCGGCGAGGTCATGTTCTCCATCACCGGGCTCGAGTTTTCCTACTCCCAGGCGCCGGAAAGCATGAAGTCCGTCATCCAGGCGTTCTGGCTGCTGACGGTCGCGATCGGCAACATGCTGGTGGTGTTCATTGCCGAGGCCAAGTTCGTCCAGTCGCAGTCGCTCGAGTTTTTCCTCTTTGCCGCGCTCATGTTCCTCGACATGGGCCTGTTCATGGTGCTGGCCA-TGCGCTATCGCTACTCCGACACGACCGGCGGCGCATCGTCTGTCGAATCGATTGAGGTGGAGCAGCAGGGCAAAAAGAAGCAGCACGATGCACTGGCCATCAGTGACACGCTGTCGGAAAGGAGTGCCAAGAGTACAACGTACGCAAACGAAGCATACCGGGAAGACTGAGCGAGAACGAAGAGGAGGAAGAACGAGGCGCAGTTTTTGAGAGCCATGTGTTGTAAAATTGCATTGCCGTTTCTCTAGTGCATCCACGCCGGGGATTGTCTCCACAGGGCAATTTCAGGTTCCAAGCGAGGTGAATGCACACTGAGACTGCTACTAACAACAGCGCGTCAGAGGTATTATGTTTGTTTCGTCGTTTAATGGCGTCATCCTGCTGTAAGTTAGGTTTATAGTTCTTTTTTTGTGTAAAAAATAGGTACTGTCTAAACTTGCTGTAATTATTTTTGTTTCAAAAGATGAATAAAAAATAACAGAAAGA]
[+] EMBL BM600907 [CCGCTGCCCCCGGGGCTGGCCAACGGTACGTTCCAGTTCCGGGCGGAGACGAGCGAAATTGGGTGCGTGCGGGAAAACATGACCGAGTTCAGCGGGAGCTTCAGTCTGCAGGCGGGCGGTGCGGTGAGCTACTTTATCAGCCGGAAGGGAGGCCGGAGCAGTCTGCTGGAGTACGCCGACACGGCTGCCAAGGACCGGAACGGGCTGCCCCGGATGCGGCTGCTAGCGAACGTGCGGACGACTAAGCAGATCTCGCTGCGGCACAACGGGAACGCGGACGTCGTGTACAACGTGGCGCTCAACCAGTACGATCAGCTGACGTCGGTGACGGAGGGCGAGTACGGGGTGTACGTCGGGGAGCGTCCGATTGCCACCGTGAAGCTCAGTCCGGGCGGTGTCTACACGCTGATATTGGACGAGTTTTTGGAGAATGAGTTTAATCTTCAAACACATACGATCACCCCGTCCAACTCGGTGCACATGCTGTGGCTAATACCGCAGTACGTCGTCATAACGGCCGGCGAGGTCATGTTCTCCATCACCGGGCTTGAGTTTTCCTACTCCCAGGCGCCGGAAAGCATGAAGTCCGTCATCCAGGCGTTCTGGCTGCTGACGGTCGCGATCGGCAACATGCTGGTGGTGTTCATCGCCGAGGCCAAGTTCGTCCAGTCGCAGTCGCTCGAGTTTTTCCT ]
[+] EMBL CNS08YP2 [ TCCGGGCGGAGA GAGCGAAATTGGGTGCGTGCGGGAAAACATGACCGAATTCAGCGGGAG TTCAGTCTGCAGGCGGGCGGTGCGGTGAGCTACTTTATCAGCCGGAAGGGAGGCCGGAGCAGTCTGCTGGAGTACGCCGACACGGCTGCCAAGGACCGGAAC GGCTGCCCCGGATGCGGCTGCTAGCGAACGTGCGCACGACCAAGCAGATCTCGCTGCGGCACAACGGGAACGCGGACGTCGTGTACAACGTGGCGCTCAACCAGTACGATCAGCTGACGTCGGTGACGGAGGGCGAGTACGGGGTGTACGTCGGGGAGCGTCCGATTGCCACCGTGAAGCTTAGCCCGGGCGGTGTCTACACGCTGATATTGGACGAGTTTTTGGAGAATGAGTTTAACCTTCAAACACACACGATCACCCCGTCCAACTCGGTGCACATGCTGTGGCTAATACCGCAGTACGTCGTCATAACGGCCGGCGAGGTCATGTTCTCCATCACCGGGCTCGAGTTTTCCTACTCCCAGGCGCCGGAAAGCATGAAGTCCGTCATCCAGGCGTTCTGGCTGCTGACGGTCGCGATCGGCAACATGCTGGTGGTGTTCATTGCCGAGGCCAAGTTCGTCCAGTCGCAGTCGCTCGAGTTTTTCCTCTTTGCCGCGCTCATGTTCCTCGACATGGGCCTGTTCATGGTGCTGGCCA TGCGCTATCGCTACTCCGACACGACCGGCGGCGCATCGTCTGTCGAATCGATTGAGGTGGAGCAGCAGGGCAAAAAGAAGCAGCACGATGCACTGGCCATCAGTGACACGCTGTCGGAAAGGAGTGCCAAGAGTACAACGTACGCAAACGAAGCATACCGGGAAGACTGAGCGAGAACGAAGAGGAGGAA ]
[-] EMBL CNS08YP3 [ GAGCGTCCGATTGCCACCATGAAACTTAGCCCGGGCGGTGTCTACACGCTGATATTGGACGAGTTTTTGGAGAATGAGTTTAACCTTCAAACACACACGATCACCCCGTCCAACTCGGTGCACATGCTGTGGCTAATACCGCAGTACGTCGTCATAACGGCCGGCGAGGTCATGTTCTCCATCACCGGGCTCGAGTTTTCCTACTCCCAGGCGCCGGAAAGCATGAAGTCCGTCATCCAGGCGTTCTGGCTGCTGACGGTCGCGATCGGCAACATGCTGGTGGTGTTCATTGCCGAGGCCAAGTTCGTCCAGTCGCAGTCGCTCGAGTTTTTCCTCTTTGCCGCGCTCATGTTCCTCGACATGGGCCTGTTCATGGTGCTGGCCATTGCGCTATCGCTACTCCGACACGACCGGCGGCGCATCGTCTGTCGAATCGATTGAGGTGGAGCAGCAGGGCAAAAAGAAGCAGCACGATGAACTGGCCATCAGTGACACGCTGTCGGAAAGGAGTGCCAAGAGTACAACGTACGCAAACGAAGCATACCGGGAAGACTGAGCGAGAACGAAGAGGAGGAAGAACGAGGCGCAGTTTTTGAGAGCCATGTGTTGTAAAATTGCATTGCCGTTTCTCTAGTGCATCCACGCCGGGGATTGTCTCCACAGGGCAATTTCAGGTTCCAAGCGAGGTGAATGCACACTGAGACTGCTACTAACAACAGCGCGTCAGAGGTATTATGTTTGTTTCGTCGTTTAATGGCGTCATCCTGCTGTAAGTTAGGTTTATAGTTCTTTTTTTGTGTAAAAAATAGGTACTGTCTAAACTTGCTGTAATTATTTTTGTTTCAAAAGATGAATAAAAAATAACAGAAAGA]
consensusID : consensus_6285#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 439 fasta sequence
[TNGCCCGAGGNNCAGATCTCGCTGCGGCACAACGGGAACGCGGACGTCGTGTACAACGTGGCGCTCAACCAGTACGATCAGCTGACGTCGGTGACGGAGGGCGAGTACGGGGTGTACGTCGGGGAGCGTCCGATTGCCATCGTGAAGCTTAGCCCGGGCGGTGTCTACACGCTGATATTGGACGAGTTTTTGGAGAATGAGTTTAACCTTCAAACACACACGATCACCCCGTCCAACTCGGTGCACATGCTGTGGCTTATACCGCAGTACGTCGTCATAACGGCCGGCGAGGTCATGTTCTCCATCACCGGGCTCGAGTTTTCCTACTCCCAGGCGCCGGAAAGCATGAAGTCCGTCATCCAGGCGTTCTGGCTGCTGACGGTCGCGATCGGCAACATGCTGGTGGTGTTCATTGCCGAGGCCAAGTTCGTCCAGTCGC]
[+] EMBL AL932588 [TNGCCCGAGGNNCAGATCTCGCTGCGGCACAACGGGAACGCGGACGTCGTGTACAACGTGGCGCTCAACCAGTACGATCAGCTGACGTCGGTGACGGAGGGCGAGTACGGGGTGTACGTCGGGGAGCGTCCGATTGCCATCGTGAAGCTTAGCCCGGGCGGTGTCTACACGCTGATATTGGACGAGTTTTTGGAGAATGAGTTTAACCTTCAAACACACACGATCACCCCGTCCAACTCGGTGCACATGCTGTGGCTTATACCGCAGTACGTCGTCATAACGGCCGGCGAGGTCATGTTCTCCATCACCGGGCTCGAGTTTTCCTACTCCCAGGCGCCGGAAAGCATGAAGTCCGTCATCCAGGCGTTCTGGCTGCTGACGGTCGCGATCGGCAACATGCTGGTGGTGTTCATTGCCGAGGCCAAGTTCGTCCAGTCGC]
[+] EMBL CNS08L94 [ TACGTCGTCATAACGGCCGGCGAGGTCATGTTCTCCATCACCGGGCTCGACTTTTCCTACTCCCAGGCGCCGGAAAGCATGAAGTCCGTCATCCAGGCGTTCTGGCTGCTGACGG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6285#0 CCGCTGCCCCCGGGGCTGGCCAACGGTACGTTCCAGTTCCGGGCGGAGAGAGCGAAATTG 60
consensus_6285#1 ------------------------------------------------------------
consensus_6285#0 GGTGCGTGCGGGAAAACATGACCGAGTTCAGCGGGAGTTCAGTCTGCAGGCGGGCGGTGC 120
consensus_6285#1 ------------------------------------------------------------
consensus_6285#0 GGTGAGCTACTTTATCAGCCGGAAGGGAGGCCGGAGCAGTCTGCTGGAGTACGCCGACAC 180
consensus_6285#1 ------------------------------------------------------------
consensus_6285#0 GGCTGCCAAGGACCGGAACGGCTGCCCCGGATGCGGCTGCTAGCGAACGTGCGGACGACT 240
consensus_6285#1 ---------------------------------------------------TNGCCCGAG 9
* *
consensus_6285#0 AAGCAGATCTCGCTGCGGCACAACGGGAACGCGGACGTCGTGTACAACGTGGCGCTCAAC 300
consensus_6285#1 GNNCAGATCTCGCTGCGGCACAACGGGAACGCGGACGTCGTGTACAACGTGGCGCTCAAC 69
*********************************************************
consensus_6285#0 CAGTACGATCAGCTGACGTCGGTGACGGAGGGCGAGTACGGGGTGTACGTCGGGGAGCGT 360
consensus_6285#1 CAGTACGATCAGCTGACGTCGGTGACGGAGGGCGAGTACGGGGTGTACGTCGGGGAGCGT 129
************************************************************
consensus_6285#0 CCGATTGCCACCGTGAAGCTTAGCCCGGGCGGTGTCTACACGCTGATATTGGACGAGTTT 420
consensus_6285#1 CCGATTGCCATCGTGAAGCTTAGCCCGGGCGGTGTCTACACGCTGATATTGGACGAGTTT 189
********** *************************************************
consensus_6285#0 TTGGAGAATGAGTTTAACCTTCAAACACACACGATCACCCCGTCCAACTCGGTGCACATG 480
consensus_6285#1 TTGGAGAATGAGTTTAACCTTCAAACACACACGATCACCCCGTCCAACTCGGTGCACATG 249
************************************************************
consensus_6285#0 CTGTGGCTAATACCGCAGTACGTCGTCATAACGGCCGGCGAGGTCATGTTCTCCATCACC 540
consensus_6285#1 CTGTGGCTTATACCGCAGTACGTCGTCATAACGGCCGGCGAGGTCATGTTCTCCATCACC 309
******** ***************************************************
consensus_6285#0 GGGCTCGAGTTTTCCTACTCCCAGGCGCCGGAAAGCATGAAGTCCGTCATCCAGGCGTTC 600
consensus_6285#1 GGGCTCGAGTTTTCCTACTCCCAGGCGCCGGAAAGCATGAAGTCCGTCATCCAGGCGTTC 369
************************************************************
consensus_6285#0 TGGCTGCTGACGGTCGCGATCGGCAACATGCTGGTGGTGTTCATTGCCGAGGCCAAGTTC 660
consensus_6285#1 TGGCTGCTGACGGTCGCGATCGGCAACATGCTGGTGGTGTTCATTGCCGAGGCCAAGTTC 429
************************************************************
consensus_6285#0 GTCCAGTCGCAGTCGCTCGAGTTTTTCCTCTTTGCCGCGCTCATGTTCCTCGACATGGGC 720
consensus_6285#1 GTCCAGTCGC-------------------------------------------------- 439
**********
consensus_6285#0 CTGTTCATGGTGCTGGCCATGCGCTATCGCTACTCCGACACGACCGGCGGCGCATCGTCT 780
consensus_6285#1 ------------------------------------------------------------
consensus_6285#0 GTCGAATCGATTGAGGTGGAGCAGCAGGGCAAAAAGAAGCAGCACGATGCACTGGCCATC 840
consensus_6285#1 ------------------------------------------------------------
consensus_6285#0 AGTGACACGCTGTCGGAAAGGAGTGCCAAGAGTACAACGTACGCAAACGAAGCATACCGG 900
consensus_6285#1 ------------------------------------------------------------
consensus_6285#0 GAAGACTGAGCGAGAACGAAGAGGAGGAAGAACGAGGCGCAGTTTTTGAGAGCCATGTGT 960
consensus_6285#1 ------------------------------------------------------------
consensus_6285#0 TGTAAAATTGCATTGCCGTTTCTCTAGTGCATCCACGCCGGGGATTGTCTCCACAGGGCA 1020
consensus_6285#1 ------------------------------------------------------------
consensus_6285#0 ATTTCAGGTTCCAAGCGAGGTGAATGCACACTGAGACTGCTACTAACAACAGCGCGTCAG 1080
consensus_6285#1 ------------------------------------------------------------
consensus_6285#0 AGGTATTATGTTTGTTTCGTCGTTTAATGGCGTCATCCTGCTGTAAGTTAGGTTTATAGT 1140
consensus_6285#1 ------------------------------------------------------------
consensus_6285#0 TCTTTTTTTGTGTAAAAAATAGGTACTGTCTAAACTTGCTGTAATTATTTTTGTTTCAAA 1200
consensus_6285#1 ------------------------------------------------------------
consensus_6285#0 AGATGAATAAAAAATAACAGAAAGA 1225
consensus_6285#1 -------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||