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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6286#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1013 fasta sequence
[TAGTGGAATAGCCAAATAGCCGGACCTTTGTCAAAGCTGGCCCCCGAACTTAACCTATCACCTATTATCCTTTACACATCAGAGCAAAAAGTACCTACCTGCATTGTAAACAGTATTTGTCGCTTTCTGTTGACGCTTGTTGTTGATGATGGTG--GGATGAAGGAAGGCAGCAGCAGAAGGCCCTCACCACGTGTTGGGCGGCGGGGCGCTTATTCTCAGTGTTTTAGGAAATTGTGGAAATGGTAATAGTGGTCCATCCAAAACCCAATCCAATCCCAAACAAGTATTTTAGCAAACAACACAGATCGCAGATTTAGTAAATGGGATTATAATTGCACGTTGTAGAGCAGCAAGAAAAAATAA-CAAAAAAAA-AATACACACACACTCTCTGTAAGGCTCTGTTAAAGGCTTTAAAGGCTTTTCAATCGATGTGTAAATGTGGAAACAAAACAACCCTATGCAAGATGAAAATAGTATCCCAAAATACAGAAATATTACACTCAACCCAATAGTAGAGAAGGTGAATTGGTGAAGGATGTAAAGCAAATGAGCGACACACACACAAGGCTAGAGTGAAGGATGAATGCGTTTGCATTATAGAGACATTAATTGAGAGAGCTGCTGAAGATGCGTGTTTATGGTAAAGATTTGTTTGTGGTTTTGAGTGATTTATAACAGTTATACCCAAGAGAAAAAGAAGGATTAAAAACACCCCCTTTAACAAAAGAAAAATACCAACAGAGAGAGAAAGAGAGAGAGAGGGAAAGAGAGCTAAATGAAAATAGAACCTTGTTAGAGAGAGAAAGAAAGAGATGCTATCTTATTATTATTAAAAAAGACCTTTTCAAGAGGGCGCAAAGCAAGAACATATATACCGATTTGAATGGGTGGGAAAAATGCGAAAAAAATAAGGCAGAGATAGGGAAAGAAAATACACAAATACACACACTACTTCTAAACAAAACAAAACTACAACTTAAACTTACGAACATTAGTAGAGTATATATTTTAAA]
[+] EMBL BX612274 [TAGTGGAATAGCCAAATAGCCGGACCTTTGTCAAAGCTGGCCCCCGAACTTAACCTATCACCTATTATCCTTTACACATCAGAGCAAAAAGTACCTACCTGCATTGTAAACAGTATTTGTCGCTTTCTGTTGACGCTTGTTGTTGATGATGGTG GGATGAAGGAAGGCAGCAGCAGAAGGCCCTCACCACGTGTTGGGCGGCGGGGCGCTTATTCTCAGTGTTTTAGGAAATTGTGGAAATGGTAATAGTGGTCCATCCAAAACCCAATCCAATCCCAAACAAGTATTTTAGCAAACAACACAGATCGCAGATTTAGTAAATGGGATTATAATTGCACGTTGTAGAGCAGCAAGAAAAAATAA CAAAAAAAA AATACACACACACTCTCTGTAAGGCTCTGTTAAAGGCTTTAAAGGCTTTTCAATCGATGTGTAAATGTGGAAACAAAACAACCCTATGCAAGATGAAAATAGTATCCCAAAATACAGAAATATTACACTCAACCCAATAGTAGAGAAGGTGAATTGGTGAAGGATGTAAAGCAAATGAGCGACACACACACAAGGCTAGAGTGAAGGATGAATGCGTTTGCATTATAGAGACATTAATTGAGAGAGCTGCTGAAGATGCGTGTTTATGGTAAAGATTTGTTTGTGGTTTTGAGTGAT ]
[+] EMBL BM623677 [ ccgTAACCTATCACCTATTATCCTTTACACATCAGAGCAAAAAGTACCTACCTGCATTGTAAACAGTATTTGTCGCTTTCTGTTGACGCTTGTTGTTGATGATGATGATGGATGAAGGAAGGCAGCAGCAGAAGGCCCTCACCACGTGTTGGGCGGCGGGGCGCTTATTCTCAGTGTTTTAGGAAATTGTGGAAATGGTAATAGTGGTCCATCCAAAACCCAATCCAATCCCAAACAAGTATTTTAGCAAACAACACAGATCGCAGATTTAGTAAATGGGATTATAATTGCACGTTGTAGAGCAGCAAGAAAAAATAACCAAAAAAAAGAATACACACACACTCTCTGTAAGGCTCTGTTAAAGGCTTTAAAGGCTTTTCAATCGATGTGTAAATGTGGA ]
[+] EMBL BX613293 [ TCGCAGATTTAGTAAATGGCCTTATAATTGCACGTTGTAGAGCAGCAAGAAAAAATAA CAAAAAAAA AATACACACACACTCTCTGTAAGGCTCTGTTAAAGGCTTTAAAGGCTTTTCAATCGATGTGTAAATGTGGAAACAAAACAACCCTATGCAAGATGAAAATAGTATCCCAAAATACAGAAATATTACACTCAACCCAATAGTAGAGAAGGTGAATTGGTGAAGGATGTAAAGCAAATGAGCGACACACACACAAGGCTAGAGTGAAGGATGAATGCGTTTGCATTATAGAGACATTAATTGAGAGAGCTGCTGAAGATGCGTGTTTATGGTAAAGATTTGTTTGTGGTTTTGAGTGATTTATAACAGTTATACCCAAGAGAAAAAGAAGGATTAAAAACACCCCCTTTAACAAAAGAAAAATACCAACAGAGAGAGAAAGAGAGAGAGAGGGAAAGAGAGCTAAATGAAAATAGAACCTTGTTAGAGAGAGAAAGAAAGAGATGCTATCTTATTATTATTAAAAAAGACCTTTTCAAGAGGGCGCAAAGCAAGAACATATATACCGATTTGAATGGGTGG ]
[+] EMBL BX609242 [ TTCAAGAGGGCGCAAAGCAAGAACATATATACCGATTTGAATGGGTGGGAAAAATGCGAAAAAAATAAGGCAGAGATAGGGAAAGAAAATACACAAATACACACACTACTTCTAAACAAAACAAAACTACAACTTAAACTTACGAACATTAGTAGAGTATATATTTTAAA]
consensusID : consensus_6286#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 650 fasta sequence
[CCGCGGAACTGTTGTAAAAAAAACGACCTTTTCTTCCGTTTGCGCGCAGCAGCATCAAACTCTCTTTCTCTCATCTCTTACTTGCGCACATCACTCTTTTGCGCAACGCCTTCGAAACCGCCTGCTCGGCTCGACTGCGTATGAATGTTCATTGTAAGTGTTGTGTGTCATTCGGTGTCTTTGTGCATGTGTTTTGCTCGCTTTAGTGGAATAGCCAAATAGCCAGAGCTGTGTCAAAGCTGGCCCCCGAACCTAACCTATCACCTATTATCCTTTACACATCAGAGCAAAAAGTACCTACCTGCATTGTAAACAGTATTTGTCGCTTTCTGTTGACGCTTGTTGTTGATGATGATGGATGAAGGAAGGCTGCAGCAGAAGGCCCTCATCACGCTCTTCACCACGTGTTGGGCGGCGGGGCGCTTATTCTCAGTGTTTTAGGAAATTGTGGAAATGGTAATAGTGGTATCCAAAACCCAATCCAATCCCAAAAAAGTATTTTAGCAAACCAACACAGATCGCAGATTTAGTAAATGGGATTATAATTGCACGTTGTAGAGCAGCAAGAAAAAATAACCAAAAAAAAAAGAATACACACACACACACACTCTCTGTAAGGCTCTATTAAAGGCTTTAAAGGCTTTTTCAAT]
[+] EMBL BM604245 [CCGCGGAACTGTTGTAAAAAAAACGACCTTTTCTTCCGTTTGCGCGCAGCAGCATCAAACTCTCTTTCTCTCATCTCTTACTTGCGCACATCACTCTTTTGCGCAACGCCTTCGAAACCGCCTGCTCGGCTCGACTGCGTATGAATGTTCATTGTAAGTGTTGTGTGTCATTCGGTGTCTTTGTGCATGTGTTTTGCTCGCTTTAGTGGAATAGCCAAATAGCCAGAGCTGTGTCAAAGCTGGCCCCCGAACCTAACCTATCACCTATTATCCTTTACACATCAGAGCAAAAAGTACCTACCTGCATTGTAAACAGTATTTGTCGCTTTCTGTTGACGCTTGTTGTTGATGATGATGGATGAAGGAAGGCTGCAGCAGAAGGCCCTCATCACGCTCTTCACCACGTGTTGGGCGGCGGGGCGCTTATTCTCAGTGTTTTAGGAAATTGTGGAAATGGTAATAGTGGTATCCAAAACCCAATCCAATCCCAAAAAAGTATTTTAGCAAACCAACACAGATCGCAGATTTAGTAAATGGGATTATAATTGCACGTTGTAGAGCAGCAAGAAAAAATAACCAAAAAAAAAAGAATACACACACACACACACTCTCTGTAAGGCTCTATTAAAGGCTTTAAAGGCTTTTTCAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6286#0 ------------------------------------------------------------
consensus_6286#1 CCGCGGAACTGTTGTAAAAAAAACGACCTTTTCTTCCGTTTGCGCGCAGCAGCATCAAAC 60
consensus_6286#0 ------------------------------------------------------------
consensus_6286#1 TCTCTTTCTCTCATCTCTTACTTGCGCACATCACTCTTTTGCGCAACGCCTTCGAAACCG 120
consensus_6286#0 ------------------------------------------------------------
consensus_6286#1 CCTGCTCGGCTCGACTGCGTATGAATGTTCATTGTAAGTGTTGTGTGTCATTCGGTGTCT 180
consensus_6286#0 -----------------------TAGTGGAATAGCCAAATAGCCGGACCTTTGTCAAAGC 37
consensus_6286#1 TTGTGCATGTGTTTTGCTCGCTTTAGTGGAATAGCCAAATAGCCAGAGCTGTGTCAAAGC 240
********************* ** ** *********
consensus_6286#0 TGGCCCCCGAACTTAACCTATCACCTATTATCCTTTACACATCAGAGCAAAAAGTACCTA 97
consensus_6286#1 TGGCCCCCGAACCTAACCTATCACCTATTATCCTTTACACATCAGAGCAAAAAGTACCTA 300
************ ***********************************************
consensus_6286#0 CCTGCATTGTAAACAGTATTTGTCGCTTTCTGTTGACGCTTGTTGTTGATGATGGTGGGA 157
consensus_6286#1 CCTGCATTGTAAACAGTATTTGTCGCTTTCTGTTGACGCTTGTTGTTGATGATGATGG-A 359
****************************************************** *** *
consensus_6286#0 TGAAGGAAGGCAGCAGCAGAAGGCCCTCA------------CCACGTGTTGGGCGGCGGG 205
consensus_6286#1 TGAAGGAAGGCTGCAGCAGAAGGCCCTCATCACGCTCTTCACCACGTGTTGGGCGGCGGG 419
*********** ***************** *******************
consensus_6286#0 GCGCTTATTCTCAGTGTTTTAGGAAATTGTGGAAATGGTAATAGTGGTCCATCCAAAACC 265
consensus_6286#1 GCGCTTATTCTCAGTGTTTTAGGAAATTGTGGAAATGGTAATAGTGGT--ATCCAAAACC 477
************************************************ **********
consensus_6286#0 CAATCCAATCCCAAACAAGTATTTTAGCAAAC-AACACAGATCGCAGATTTAGTAAATGG 324
consensus_6286#1 CAATCCAATCCCAAAAAAGTATTTTAGCAAACCAACACAGATCGCAGATTTAGTAAATGG 537
*************** **************** ***************************
consensus_6286#0 GATTATAATTGCACGTTGTAGAGCAGCAAGAAAAAATAACAAAAAAAAAA---------- 374
consensus_6286#1 GATTATAATTGCACGTTGTAGAGCAGCAAGAAAAAATAACCAAAAAAAAAAGAATACACA 597
**************************************** *********
consensus_6286#0 TACACACACACTCTCTGTAAGGCTCTGTTAAAGGCTTTAAAGGCTTTT-CAATCGATGTG 433
consensus_6286#1 CACACACACACTCTCTGTAAGGCTCTATTAAAGGCTTTAAAGGCTTTTTCAAT------- 650
************************* ********************* ****
consensus_6286#0 TAAATGTGGAAACAAAACAACCCTATGCAAGATGAAAATAGTATCCCAAAATACAGAAAT 493
consensus_6286#1 ------------------------------------------------------------
consensus_6286#0 ATTACACTCAACCCAATAGTAGAGAAGGTGAATTGGTGAAGGATGTAAAGCAAATGAGCG 553
consensus_6286#1 ------------------------------------------------------------
consensus_6286#0 ACACACACACAAGGCTAGAGTGAAGGATGAATGCGTTTGCATTATAGAGACATTAATTGA 613
consensus_6286#1 ------------------------------------------------------------
consensus_6286#0 GAGAGCTGCTGAAGATGCGTGTTTATGGTAAAGATTTGTTTGTGGTTTTGAGTGATTTAT 673
consensus_6286#1 ------------------------------------------------------------
consensus_6286#0 AACAGTTATACCCAAGAGAAAAAGAAGGATTAAAAACACCCCCTTTAACAAAAGAAAAAT 733
consensus_6286#1 ------------------------------------------------------------
consensus_6286#0 ACCAACAGAGAGAGAAAGAGAGAGAGAGGGAAAGAGAGCTAAATGAAAATAGAACCTTGT 793
consensus_6286#1 ------------------------------------------------------------
consensus_6286#0 TAGAGAGAGAAAGAAAGAGATGCTATCTTATTATTATTAAAAAAGACCTTTTCAAGAGGG 853
consensus_6286#1 ------------------------------------------------------------
consensus_6286#0 CGCAAAGCAAGAACATATATACCGATTTGAATGGGTGGGAAAAATGCGAAAAAAATAAGG 913
consensus_6286#1 ------------------------------------------------------------
consensus_6286#0 CAGAGATAGGGAAAGAAAATACACAAATACACACACTACTTCTAAACAAAACAAAACTAC 973
consensus_6286#1 ------------------------------------------------------------
consensus_6286#0 AACTTAAACTTACGAACATTAGTAGAGTATATATTTTAAA 1013
consensus_6286#1 ----------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||