These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6287#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 692 fasta sequence [CCGCCCACGCGTCCGCACCGAGTGAAGCGTCGCACAACGTTCACAACTTGCGCGTCGTGTGGTTTTGGGCGATTCCATTCGTCGGTGACACAAAACGTGCTCTGTTTGTAACTGTCTGTTGATATTAGAGTATCCTGAACACAGTAGAACAATGGCCACGATTGGAAGCCGAATCGTGCTAGTGCTGTTTTGTTTCGTGCTGGGGAATTTCGTACTGTTTCACGATCGTGAACGGATCGTTCTCGCGCAGTACATCGAAGATGAAACGTCATTACGCGGGCTCGACTTTCTTGGTGATTCGCCCAAAGGACTTTTTGGACGATGGCATTCCGAGAAGCAATATTTGAGACGCTTGCACCTCGATCGTACGGGTGAATGATGGATGACCTTGAAATGCAACCGTCTCTCTAGTGCTTCTATCAATCGAAAGCAGGTTTATCGAATACTCAGGACAATTGAAATTCGATCCCAATGGATGCCACAAAACATGTATGAGACTGAGCTGATGATTTCAGAACCAAGGCGGGATGAATTACCTTAGGACAAAGCCATCCAGGAGTGTTGCAAGTTATCAACGAAAGAAATTAAATATAATTAGTTTTAGGTTGTACTGTCGAAGTTTGTGTGTTATATGATGAAGATAAGAATATTGTTTAAAACTCATAATTGAAGTTCAATAAAAAGTAATATTT] [+] EMBL BM646031 [CCGCCCACGCGTCCGCACCGAGTGAAGCGTCGCACAACGTTCACAACTTGCGCGTCGTGTGGTTTTGGGCGATTCCGTTCGTCGGTGACACAAAACGTGCTCTGTTTGTAACTATCTGTTGATATTAGAGCATCCTGAACACAGTAGAACAATGGCCACGATTGGAAGCCGAGTCGTGCTAGTGCTGTTTTGTTTCGTGCTGGGGAATTTCGTACTGTTTCACGATCGTGAGCGGATCGTTCTCGCGCAGTACCTCGAAGATGAAACGTCATTACGCGGGCTCGACTTTCTTGGTGATTCGCCCAAAGGACTTTTTGGACGATGGCACTCCGAGAAGCAATATTTGAGACGCTTGCATCTCGATCGTACGGGCGAATGATGGATGACCTTGAAATGCAACCGTCTCTCTAGTGCTTCTATCAATCGAAAGCAGGTTTATCGAATACTCAGGACAATTGAAATTCGATCCCAATGGATGCCACAATACATGTATGAGACTGAGCTGATGATTTCAGAACCAAGGCGGGATGAATTATCTTAGGACAAAGCCATCCAGGAGTGTTGCAAGTTATCAACGAAAGAAATTAAATATAATTAGTTTTAGGTTGTACTGTCGAAGTTTGTGTGTTATATGATGAAGATATGAATATTGTTTAAAA ] [+] EMBL BX611417 [ TTCACAACTTGCGCGTCGTGTGGTTTTGGGCGATTCCATTCGTCGGTGACACAAAACGTGCTCTGTTTGTAACTGTCTGTTGATATTAGAGTATCCTGAACACAGTAGAACAATGGCCACGATTGGAAGCCGAATCGTGCTAGTGCTGTTTTGTTTCGTGCTGGGGAATTTCGTACTGTTTCACGATCGTGAACGGATCGTTCTCGCGCAGTACATCGAAGATGAAACGTCATTACGCGGGCTCGACTTTCTTGGTGATTCGCCCAAAGGACTTTTTGGACGATGGCATTCCGAGAAGCAATATTTGAGACGCTTGCACCTCGATCGTACGGGTGAATGATGGATGACCTTGAAATGCAACCGTCTCTCTAGTGCTTCTATCAATCGAAAGCAGGTTTATCGAATACTCAGGACAATTGAAATTCGATCCCAATGGATGCCACAAAACATGTATGAGACTGAGCTGATGATTTCAGAACCAAGGCGGGATGAATTACCTTAGGACAAAGCCATCCAGGAGTGTTGCAAGTTATCAACGAAAGAAATTAAATATAATTAGTTTTAGGTTGTACTGTCGAAGTTTGTGTGTTATATG ] [+] EMBL BX626186 [ TGGTTTTGGGCGATTCCATTCGTCGGTGACACAAAACGTGCTCTGTTTGTAACTGTCTGTTGATATTAGAGTATCCTGAACACAGTAGAACAATGGCCACGATTGGAAGCCGAATCGTGCTAGTGCTGTTTTGTTTCGTGCTGGGGAATTTCGTACTGTTTCACGATCGTGAACGGATCGTTCTCGCGCAGTACATCGAAGATGAAACGTCATTACGCGGGCTCGACTTTCTTGGTGATTCGCCCAAAGGACTTTTTGGACGATGGCATTCCGAGAAGCAATATTTGAGACGCTTGCACCTCGATCGTACGGGTGAATGATGGATGACCTTGAAATGCAACCGTCTCTCTAGTGCTTCTATCAATCGAAAGCAGGTTTATCGAATACTCAGGACAATTGAAATTCGATCCCAATGGATGCCACAAAACATGTATGAGACTGAGCTGATGATTTCAGAACCAAGGCGGGATGAATTACCTTAGGACAAAGCCATCCAGGAGTGTTGCAAGTTATCAACGAAAGAAATTAAATATAATTAGTTTTAGGTTGTACTGTCGAAGTTTGTGTGTTATATGATGAAGATAAGAATATTGTTTAAAACTCATAATTGAAGTTCAATAAAAAGTAATATTT] [+] EMBL BX615521 [ CATTCCGAGAAGCAATATTTGAGACGCTTGCACCTCGATCGTACGGGTGAATGATGGATGACCTTGAAATGCAACCGTCTCTCTAGGGCTTCTATCAATCGAAAGCAGGGTTATCGAATACTCAGGACAATTGAAATTCGATCCCAATGGATGCCACAAAACATGTATGAGACTGAGCTGATGATTTCAGAACCAAGGCGGGATGAATTACCTTAGGACAAAGCCATCCAGGAGGGTTGCAAGTTATCAACGAAAGAAATTAAATATAATTAGTTTTAGGGTGTACTGTCGAAGTTTGTGTGTTATATGATGAAGAAAAGAATATTGTTTAAAACTCATAATTGAAGTTCAATAAAAAG ] consensusID : consensus_6287#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 437 fasta sequence [AATCCCCGAGGTNCGCGTCGTGTGGTTTTGGGCGATCCATTCGTCGGTGACACAAAACGTGCTCTGTTTGTAACTGTCTGTTGATATTAGAGTATCCTGAACACAGTAGAACAATGGCCACGATTGGAAGCCGAATCGTGCTAGTGCTGTTTTGTTTCGTGCTGGGGAATTTCGTACTGTTTCACGATCGTGAACGGATCGTTCTCGCGCAGTACATCGAAGATGAAACGTCATTACGCGGGCTCGACTTTCTTGGTGATTCGCCCAAAGGACTTTTTGGACGATGGCATTCCGAGAAGCAATATTTGAGACGCTTGCACCTCGATCGTACGGGTGAATGATGGATGACCTTGAAATGCAACCGTCTCTCTAGTGCTTCTATCAATCGAAAGCAGGTTTATCGAATACTCAGGACAATTGAAATTCGATCCCAATGG] [+] EMBL AL932583 [AATCCCCGAGGTNCGCGTCGTGTGGTTTTGGGCGATCCATTCGTCGGTGACACAAAACGTGCTCTGTTTGTAACTGTCTGTTGATATTAGAGTATCCTGAACACAGTAGAACAATGGCCACGATTGGAAGCCGAATCGTGCTAGTGCTGTTTTGTTTCGTGCTGGGGAATTTCGTACTGTTTCACGATCGTGAACGGATCGTTCTCGCGCAGTACATCGAAGATGAAACGTCATTACGCGGGCTCGACTTTCTTGGTGATTCGCCCAAAGGACTTTTTGGACGATGGCATTCCGAGAAGCAATATTTGAGACGCTTGCACCTCGATCGTACGGGTGAATGATGGATGACCTTGAAATGCAACCGTCTCTCTAGTGCTTCTATCAATCGAAAGCAGGTTTATCGAATACTCAGGACAATTGAAATTCGATCCCAATGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6287#0 CCGCCCACGCGTCCGCACCGAGTGAAGCGTCGCACAACGTTCACAACTTGCGCGTCGTGT 60 consensus_6287#1 -------------------------------------AATCCCCGAGGTNCGCGTCGTGT 23 * * * * * ********** consensus_6287#0 GGTTTTGGGCGATTCCATTCGTCGGTGACACAAAACGTGCTCTGTTTGTAACTGTCTGTT 120 consensus_6287#1 GGTTTTGGGCGAT-CCATTCGTCGGTGACACAAAACGTGCTCTGTTTGTAACTGTCTGTT 82 ************* ********************************************** consensus_6287#0 GATATTAGAGTATCCTGAACACAGTAGAACAATGGCCACGATTGGAAGCCGAATCGTGCT 180 consensus_6287#1 GATATTAGAGTATCCTGAACACAGTAGAACAATGGCCACGATTGGAAGCCGAATCGTGCT 142 ************************************************************ consensus_6287#0 AGTGCTGTTTTGTTTCGTGCTGGGGAATTTCGTACTGTTTCACGATCGTGAACGGATCGT 240 consensus_6287#1 AGTGCTGTTTTGTTTCGTGCTGGGGAATTTCGTACTGTTTCACGATCGTGAACGGATCGT 202 ************************************************************ consensus_6287#0 TCTCGCGCAGTACATCGAAGATGAAACGTCATTACGCGGGCTCGACTTTCTTGGTGATTC 300 consensus_6287#1 TCTCGCGCAGTACATCGAAGATGAAACGTCATTACGCGGGCTCGACTTTCTTGGTGATTC 262 ************************************************************ consensus_6287#0 GCCCAAAGGACTTTTTGGACGATGGCATTCCGAGAAGCAATATTTGAGACGCTTGCACCT 360 consensus_6287#1 GCCCAAAGGACTTTTTGGACGATGGCATTCCGAGAAGCAATATTTGAGACGCTTGCACCT 322 ************************************************************ consensus_6287#0 CGATCGTACGGGTGAATGATGGATGACCTTGAAATGCAACCGTCTCTCTAGTGCTTCTAT 420 consensus_6287#1 CGATCGTACGGGTGAATGATGGATGACCTTGAAATGCAACCGTCTCTCTAGTGCTTCTAT 382 ************************************************************ consensus_6287#0 CAATCGAAAGCAGGTTTATCGAATACTCAGGACAATTGAAATTCGATCCCAATGGATGCC 480 consensus_6287#1 CAATCGAAAGCAGGTTTATCGAATACTCAGGACAATTGAAATTCGATCCCAATGG----- 437 ******************************************************* consensus_6287#0 ACAAAACATGTATGAGACTGAGCTGATGATTTCAGAACCAAGGCGGGATGAATTACCTTA 540 consensus_6287#1 ------------------------------------------------------------ consensus_6287#0 GGACAAAGCCATCCAGGAGTGTTGCAAGTTATCAACGAAAGAAATTAAATATAATTAGTT 600 consensus_6287#1 ------------------------------------------------------------ consensus_6287#0 TTAGGTTGTACTGTCGAAGTTTGTGTGTTATATGATGAAGATAAGAATATTGTTTAAAAC 660 consensus_6287#1 ------------------------------------------------------------ consensus_6287#0 TCATAATTGAAGTTCAATAAAAAGTAATATTT 692 consensus_6287#1 -------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||