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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6288#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 950 fasta sequence
[AGGCAAGAATCCGCACGATTACGTTTCGCGCTTGCTTACAACAGCTCCAGTAAGCTTATCAAACTCCCGCGCTCACTTTAGCCATCTGATTTCCAACATTGCAAACGTGTCATCAATACGCAAAACATAGTTCAATCAATTAGGACGGTGACACGTATTAGAGTGATGTATTACATACGGAATGGATCGTTTCACGACTATGAGTTAAGCATCGATTACATTACTTNTNGCTATCAACGGACGATNTGCGATATACAAAACGCCCTGCTGAAACGATGTTNAACCAAATGTCCGATCCCGGAGGCGAGCTTGAGCAGCATGTAAAAGATCCGTTATCCTGTATCAATAGGCTACACACGAGCGAAAAACGAACACGTGGGACGTACTCGGGCGCGTGCCAGTGATGCCGTCCTAGGGCTGGNTTGCCAGAGAAAAAGTAATACGNAACGGGGNATTGGTCCTACCCTATACGACGACAGAACTNGNATTCNAATAGNATAATTGGGACTACACCCAGGNCGNAACTTGGTGNGCGTACCAAGCGGTGNGGACCCCTATCCGGGCACTCCCTGGACGGGATCCGGTCAAGGCNGCGTACCAACNNCCGCTAAATTAAAACCGNTAAACCCAACACAACACCGCGGCTGGATAACCCACACTTTGACTTGGCNCCACCNTCNACATGGGCCGCCCAACAGNGGAACAGGCAACTTCCCCTTCCCTCNNGNCCACAAACGGGGCCGAAGGAGCCCCNAACAAGACNCAGGAAACCAATTNCCCAAAAAAGCGAGCTTCACGAGTAGNCCCAAANTCCACGAATATCGNGCGAGAGATNGGAAGTGAGACCCGTATTCTACCCCCAACCGACGCTAGGNAGGACCACCCCCANCGCATGGAACNTNACATTAGTNAATCCACCGANGAGACCATGGCTAAAATTCACTCCNGGA]
[+] EMBL AL692714 [AGGCAAGAATCCGCACGATTACGTTTCGCGCTTGCTTACAACAGCTCCAGTAAGCTTATCAAACTCCCGCGCTCACTTTAGCCATCTGATTTCCAACATTGCAAACGTGTCATCAATACGCAAAACATAGTTCAATCAATTAGGACGGTGACACGTATTAGAGTGATGTATTACATACGGAATGGATCGTTTCACGACTATGAGTTAAGCATCGATTACATTACTTNTNGCTATCAACGGACGATNTGCGATATACAAAACGCCCTGCTGAAACGATGTTNAACCAAATGTCCGATCCCGGAGGCGAGCTTGAGCAGCATGTAAAAGATCCGTTATCCTGTATCAATAGGCTACACACGAGCGAAAAACGAACACGTGGGACGTACTCGGGCGCGTGCCAGTGATGCCGTCCTAGGGCTGGNTTGCCAGAGAAAAAGTAATACGNAACGGGGNATTGGTCCTACCCTATACGACGACAGAACTNGNATTCNAATAGNATAATTGGGACTACACCCAGGNCGNAACTTGGTGNGCGTACCAAGCGGTGNGGACCCCTATCCGGGCACTCCCTGGACGGGATCCGGTCAAGGCNGCGTACCAACNNCCGCTAAATTAAAACCGNTAAACCCAACACAACACCGCGGCTGGATAACCCACACTTTGACTTGGCNCCACCNTCNACATGGGCCGCCCAACAGNGGAACAGGCAACTTCCCCTTCCCTCNNGNCCACAAACGGGGCCGAAGGAGCCCCNAACAAGACNCAGGAAACCAATTNCCCAAAAAAGCGAGCTTCACGAGTAGNCCCAAANTCCACGAATATCGNGCGAGAGATNGGAAGTGAGACCCGTATTCTACCCCCAACCGACGCTAGGNAGGACCACCCCCANCGCATGGAACNTNACATTAGTNAATCCACCGANGAGACCATGGCTAAAATTCACTCCNGGA]
consensusID : consensus_6288#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 796 fasta sequence
[GCAAGAATCCCCCGAGGTTTCACCAGACCACTCCGGAAGGCTTGCGCATGCTCAGAGAGGTCAAAGTGTCTTAGTGCAGTGAATAAACAATAATAAAACGTTTCGCGCTTGCTTACAAAGCTCCGGAAGCTTATCAAACTCCCGCGCTCACTTTAGCCA-TCTGATTTCCAACATTGCAAACGTGTCATCAATACGCA-A----AACATAGTTCAATCAATTAGGACGGTGACACGTATTGAGTGATGTTTCATCGGAATGGATCGTTTCACGCTTGGTTTGCATCGATTACATTACTTTTGCTATCAACGGAGATTGCGATTACAAACGCCCTGCTGAAACGATGTTACCAATGTCGATCCCGGAGCGAGCTTGGCAGCTGTAAAGATCCGTTCCTGTTCAATGCTACACAGAGCGAAAACGAACGTGGCGTATCGGCGGTGCCG-TGTGCGTCTGGCTGGTGCGGCAAAGTAATCGAAGGGA-TGGGCTCCTTCCGCG-AA-GATGATT-ATGATATGGCTACCCAGCGAATGTGCGTCCAGCGTGGCCCTTCGGACTCTGAGGATCGTTGTGCTTACACCGTCTATAACTACAAAAAGGTGTACATGTGCTT-T-TGCCAAGGCGATCTCTGCAACGCAG-CCAACCGACTCAACGTCAGCCATCGTTGGGTGAGCCTTT-CCAGTGGCACCGTG-ATATTTTCGCTTGTA-TTTGG-AAGTTGTACTTATCTCAAATTTCACAAATGGTATTATCCACTACGTGATCGTGATATTCATCCATCTATGTGCTAATTCTTGAATGTTTATTA]
[+] EMBL AL930739 [GCAAGAATCCCCCGAGGTTT A CACTCCGGAAGGCTTGCGCATGCTCAGAGAGGTCAAAGTGTCTTAGTGCAGTGAATAAACAATAATAAAACGTTTCGCGCTTGCTTACAAAGCTCCAGAAGCTTATCAAACTCCCGCGCTCACTTTAGCCA TCTGATTTCCAACATTGCAAACGTGTCATCAATACGCA A AACATAGTTCAATCAATTAGGACGGTGACACGTATTGAGTGATGTTTCATCGGAATGGATCGTTTCACGCTTGGTTTGCATCGATTACATTAC TTTGCTATCAACGGAGATTGCGATTACAAACGCCCTGCTGAAACGATGTTACCAATGTCGATCCCGGAGCGAGCTTGGCAGCTGTAAAGATCCGTTCCTGTTCAATGCTACACAGAGCGAAAACGAACGTGGCGTATCGGCGGTGCCG TGTGCGTCTGGCTGGTGCGGCAAAGTAATCGAAGGGACTGGGCTCCTTCCGCG AA GATGATT ATGATATGGCTACCCAGCGAATGTGCGTCCAGCGTGGCCCTTCGGACTCTGAGGATCGTTGTGCGTACACCGTCTATAACTACAAAAAGGTGTACATGTGCTTATNTGCCAAGGCGATCTCTGCAACGCAGACCAACCGACTCAACGTCAGCCATCGTTGGGTGAGCCTTT CCAGTGGCACCGTG ATAT ]
[+] EMBL AL695053 [ CCGAGGTTTCACCAGACCACTCCGGAAGGCTTGCGCATGCTCAGAGAGGTCAAAGTGTCTTAGTGCAGTGAATAAACAATAATAAAACGTTTCGCGCTTGCTTACAAAGCTCCGGAAGCTTATCAAACTCCCGCGCTCACTTTAGCCA TCTGATTTCCAACATTGCAAACGTGTCATCAATACGCA A AACATAGTTCAATCAATTAGGACGGTGACACGTATTGAGTGATGTTTCATCGGAATGGATCGTTTCACGCTTGGTTTGCATCGATTACATTACTTTTGCTATCAACGGAGATTGCGATTACAAACGCCCTGCTGAAACGATGTTACCAATGTCGATCCCGGAGCGAGCTTGGCAGCTGTAAAGATCCATTCCTGTTCAATGCTACACAGAGCGAAAACGAACGTGGCGTATCGGCGGTGCCGCTGTGCGTCTGGCTGGTGCGGCAAAGTAATCCAAGGGA TGGGCTCCTTCCGCGCAAGGATGATTCATGATATGGCTACCCAGCGAATGTGCGTCCAGCGTGGCCCTTCGGACTCTGAGGATCGTTGTGCTTACACCGTCTATAACTACCAAAAGGTGTACATGTGCTT T TGCCAAGGCGATCTCTGCNACGCAG CAACCGACTCAACGTCAGCCATCGTAGGGTGAGCCTTTCCCAGTGGCACCGTGCATATTTTCGCTTGTA TTTGG AAGTTGTACTTATCTCAAATTTCACAAATGGTATTATCCACTACGTGATCGTGATATTCATCCATCTATGTGCTAATTCTTGAATGTTTATTA]
[+] EMBL BM616459 [ ccgACCAGACCACTCCGGAAGGCTTGCGCATGCTCAGAGAGGTCAAAGTGTCTTAGTGCAGTGAATAAACAATAATAAAACGTTTCGCGCTTGCTTACAAAGCTCCGGAAGCTTATCAAACTCCCGCGCTCACTTTAGCCACTC GATTTCCAACATTGCAAACGTGTCATCAATACGCACAGTTCAACACAGTTCAATCAATTAGGACGGTGACACGTATTGAGTGATGTTTCAACGGAATGGAACATTTCACGCTTGGTTTGCATCGATTATATTGCTTTTGCTATCAACGGAGATTGCGATTACAAACGCCCTGCTGAAACGATGTTACCAATGTCGATCCCGGAGCGAGCTTGGCAGCTGTAAAGATCCGTTCCTGTTCAATGCTACACAGAGCGAAAACGAACGTGGCGTATCGGCAGTGCCG TGTGCGTCTGGCTGGTGCGGCAAAGTAATCGAAGGGA TGGGCTCCTTCCGCG AA GATGATT ATGATATGGCTACCCAGCGAATGTGCGTCCAGCGTGGCCCTTCGGACTCTGAGGATCGTTGTGCTTACACCGTCTATAACTACAAAAAGGTGTACATGTGCTT T TGCCAAGGCGATCTCTGCAACGCAG CCAACCGACTCAACGTCAGCCATCGTTGGGTGAGCCTTT CCAGT ]
[+] EMBL BM580587 [ ccGCGCATGCTCAGAGAGGTCAAAGTGTCTTAGTGCAGTGAATAAACAATAATAAAACGTTTCGCGCTTGCTTACAAAGCTCCGGAAGCTTATCAAACTCCCGCGCTCACTTTAGCCACTC GATTTCCAACATTGCAAACGTGTCATCAATACGCACAGTTCAACACAGTTCAATCAATTAGGACGGTGACACGTATTGAGTGATGTTTCAACGGAATGGAACATTTCACGCTTGGTTTGCATCGATTATATTGCTTTTGCTATCAACGGAGATTGCGATTACAAACGCCCTGCTGAAACGATGTTACCAATGTCGATCCCGGAGCGAGCTTGGCAGCTGTAAAGATCCGTTCCTGTTCAATGCTACACAGAGCGAAAACGAACGTGGCGTATCGGCAGTGCCG TGTGCGTCTGGCTGGTGCGGCAAAGTAATCGAAGGGA TGGGCTCCTTCCGCG AA GATGATT ATGATATGGCTACCCAGCGAATGTGCGTCCAGCGTGGCCCTTCGGACTCTGAGGATCGTTGTGCTTACACCGTCTATAACTACAAAAAGGTGTACATGTGCTT T TGCCAAGGCGATCTCTGCAACGCAG CCAACCGACTCAACGTCAGCCATCGTTGGGTGAGCCTTT CCAGTGGCACCGTG ATATTTTCGCTTGTATTTTGGAAAGTTGTACTTATCTCAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6288#0 ------------------------------------------------------------
consensus_6288#1 GCAAGAATCCCCCGAGGTTTCACCAGACCACTCCGGAAGGCTTGCGCATGCTCAGAGAGG 60
consensus_6288#0 -----------------AGGCAAGAATCCGCACGATTACGTTTCGCGCTTGCTTACAACA 43
consensus_6288#1 TCAAAGTGTCTTAGTGCAGTGAATAAACAATAATAAAACGTTTCGCGCTTGCTTACAA-A 119
** ** ** * * * ********************* *
consensus_6288#0 GCTCCAGTAAGCTTATCAAACTCCCGCGCTCACTTTAGCCATCTGATTTCCAACATTGCA 103
consensus_6288#1 GCTCCGG-AAGCTTATCAAACTCCCGCGCTCACTTTAGCCATCTGATTTCCAACATTGCA 178
***** * ****************************************************
consensus_6288#0 AACGTGTCATCAATACGCAAAACATAGTTCAATCAATTAGGACGGTGACACGTATTAGAG 163
consensus_6288#1 AACGTGTCATCAATACGCAAAACATAGTTCAATCAATTAGGACGGTGACACGTATT-GAG 237
******************************************************** ***
consensus_6288#0 TGATGTATTACATACGGAATGGATCGTTTCACGACTATGAGTTAAGCATCGATTACATTA 223
consensus_6288#1 TGATGTTTCAT---CGGAATGGATCGTTTCACGCTT----GGTTTGCATCGATTACATTA 290
****** * * ******************* * * * ***************
consensus_6288#0 CTTNTNGCTATCAACGGACGATNTGCGATATACAAAACGCCCTGCTGAAACGATGTTNAA 283
consensus_6288#1 CTTTTG-CTATCAACGGA--GATTGCGAT-TACAAA-CGCCCTGCTGAAACGATGTTA-- 343
*** * *********** ****** ****** ********************
consensus_6288#0 CCAAATGTCCGATCCCGGAGGCGAGCTTGAGCAGCATGTAAAAGATCCGTTATCCTGTAT 343
consensus_6288#1 -CCAATGTC-GATCCCGGAG-CGAGCTTG-GCAGC-TGTAAA-GATCCGT--TCCTGT-T 394
* ****** ********** ******** ***** ****** ******* ****** *
consensus_6288#0 CAATAGGCTACACACGAGCGAAAAACGAACACGTGGGACGTACTCGGGCGCGTGCCAGTG 403
consensus_6288#1 CAAT--GCTACACA-GAGCGAAAA-CGAACGTG----------------GCGTATCGGCG 434
**** ******** ********* ***** * **** * * *
consensus_6288#0 ATGCCGTCCTAGGGCTGGNTTGCCAGAGAAAAAGTAATACGNAACGGGGNATTGGTCCTA 463
consensus_6288#1 GTGCCGTG-TGCGTCTGGCTGGT--GCGGCAAAGTAAT-CGAA----GGGATGGGCT--- 483
****** * * **** * * * * ******** ** * ** ** **
consensus_6288#0 CCCTATACGACGACAGAACTNGNATTCNAATAGNATAATTGGGACTACACCCAGGNCGNA 523
consensus_6288#1 CCTTCCGCGAAGATGATTATGATATGGCTACCCAGCGAATG----TGCGTCCAGCGTGGC 539
** * *** ** * ** * * ** * * **** *
consensus_6288#0 ACTTGGTGNGCGTACCAAGCGGTGNGGACCCCTATCCGGGCACTCCCTGGACGGGATCCG 583
consensus_6288#1 CCTTCGGACTC-----------TGAGGATCGTTGTGCTTACACCGTCTAT-----AACTA 583
*** * * ** *** * * * * *** ** * *
consensus_6288#0 GTCAAGGCNGCGTACCAACNNCCGCTAAATTAAAACCGNTAAACCCAACACAACACCGCG 643
consensus_6288#1 CAAAAAGGTGTACATGTGCTTTTGCCAAGGCGATCTCTGCAA-CGCAGCCAACCGACTCA 642
** * * * * ** ** * * ** * ** * * * * *
consensus_6288#0 GCTGGATAACCCACACTTTGACTTGGCNCCACCNTCNACATGGGCCGCCCAACAGNGGAA 703
consensus_6288#1 AC---GTCAGCCAT-CGTTGGGTGAGCCTTTCCAGTGGCACCGTGATATTTTCGCTTGTA 698
* * * *** * *** * ** ** ** * * * *
consensus_6288#0 CAGGCAACTTCCCCTTCCCTCNNGNC-CACAAACGGGGCCGAAGGAGCCCCNAACAAGAC 762
consensus_6288#1 TTTGGAAGTTGTACTTATCTCAAATTTCACAAATGGTATT------ATCCACTACGTGA- 751
* ** ** *** *** ****** ** ** ** **
consensus_6288#0 NCAGGAAACCAATTNCCCAAAAAAGCGAGCTTCACGAGTAGNCCCAAANTCCACGAATAT 822
consensus_6288#1 TCGTGATATTCATCCATCTATGTGCTAA--TTCTTGAATGTTTATTA------------- 796
* ** * ** * * * *** ** * *
consensus_6288#0 CGNGCGAGAGATNGGAAGTGAGACCCGTATTCTACCCCCAACCGACGCTAGGNAGGACCA 882
consensus_6288#1 ------------------------------------------------------------
consensus_6288#0 CCCCCANCGCATGGAACNTNACATTAGTNAATCCACCGANGAGACCATGGCTAAAATTCA 942
consensus_6288#1 ------------------------------------------------------------
consensus_6288#0 CTCCNGGA 950
consensus_6288#1 --------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||