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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6291#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 721 fasta sequence
[TTTGCCTTTGCCAAAACTCTCTACGCTCATCCTAGAAGGTGTGGCGGCGGCGAGAAGGACGCGTGCGTGAAGAAAATTCAAATGAAACTTCCATCCTTCTCTTCCTCTCTCGCTCTCTCATCATCAAACAAGCTTCATCCAATCAATCCATTGGTAGTGAGGAAACGGGTGCGCAATTTTGTGCGACTGTGGTGCAATGGGTCCGATCCACCAATACAATACAGCGTCGTAGACTAGTGCGTTGCGGGAAGCTTTCGGGCCATTTTCGGCCCAGTTTCCAGCCTCCCTCTGGGGTAGCTGCTGCTGTTCCTTTACTGGCTTTGCTTTGTCTCCCAACCAACGAATGTATGGGGTACGGCCGCGAATTGATGCCAAACACAGATGAGCCAGGTTCAGCCAGCTGTGCGCCGCAAATTTTTGTAGGACGGCGTAGAAGAATGTAGACACGTGCAGGCAGCCAGGGGAGCGGAGGTGTTTCGTTTTAACACAGGCTAAGAAACGGCCAGGCGTTACACAAATAAGATAAACAGTTTTTTGCTAATGGTACTGCCACGGTAACAATCGGTTTTGGAGCAACATGCGACAATGTACACATACATCCTTGTAGGGAGGGACAGATGATAACATCTGCTCGTTTTTTTAAGCGCTTAAACCATGTGTGGTTAGGGAGAGAGCGAGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA]
[+] EMBL BX608432 [TTTGCCTTTGCCAAAACTCTCTACGCTCATCCTAGAAGGTGTGGCGGCGGCGAGAAGGACGCGTGCGTGAAGAAAATTCAAATGAAACTTCCATCCTTCTCTTCCTCTCTCGCTCTCTCATCATCAAACAAGCTTCATCCAATCAATCCATTGGTAGTGAGGAAACGGGTGCGCAATTTTGTGCGACTGTGGTGCAATGGGTCCGATCCACCAATACAATACAGCGTCGTAGACTAGTGCGTTGCGGGAAGCTTTCGGGCCATTTTCGGCCCAGTTTCCAGCCTCCCTCTGGGGTAGCTGCTGCTGTTCCTTTACTGGCTTTGCTTTGTCTCCCAACCAACGAATGTATGGGGTACGGCCGCGAATTGATGCCAAACACAGATGAGCCAGGTTCAGCCAGCTGTGCGCCGCAAATTTTTGTAGGACGGCGTAGAAGAATGTAGACACGTGCAGGCAGCCAGGGGAGCGGAGGTGTTTCGTTTTAACACAGGCTAAGAAACGGCCAGGCGTTACACAAATAAGATAAACAGTTTTTTGCTAATGGTACTGCCACGGTAACAATCGGTTTTGGAGCAACATGCGACAATGTACACATACATCCTTGTAGGGAGGGACAGATGATAACATCTGCTCGTTTTTTTAAGCGCTTAAACCATGTGTGGTTAGGGAGAGAGCGAGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA]
consensusID : consensus_6291#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 686 fasta sequence
[CCGTTTTTTTTCTTCAACAGCACAAAATACCACTTTGCAAACCTCCGCCTGTCCTGCGTGGGCAGCGGTCCAATCACGTCCAGGCGCGAAATCATCATCAAACAAGCTTCATCCAATCAATCCATTGGTAGTGAGGAAAAGGGTGCGACTGTGGTTTTGTGAAGGAAAATTTATTTTTTAGTGAGAATGTTGGGTCACGACCAATTACGACCTTCATTTAGAATGAAGCTTACATTTTAATGTGGCTTAAACACGATGGAATTGGTTTGATGAACAAAACATTTTGCAACTTGAACTTCACGACGAACCTGTTGCTGCTCTGGAAGGGCGCACATAAATCTTAACGATTGCTTTTTTTCACCTCGTTTTATCCTTGGATCGAGAGCTTGGATGTGTTGCCATGGTTCGTCAAAATAAAACTCGTCGTAATTCCGACTGGATGAATGCTCACCGATCCCGGTGACTACCGGTTGTCGTCTGTTGTGAGCGGCTGGGCAGTGTGATGCGGACGGGGGCTGTTTAGTAAAAGTGGGTGGGCTTAGGACAAGTAAGCAGCGTAAGGTTAGAAAATTGGGAAACTTTAAAATGCGTTTATGGGCGGATAGTTTTTGTCACGATGTTTTTTTCTTCTTCTTCTTCCTGTTTCCCTGCGGCGATCATACATTGGATAATGGAAGGGAACGCGC]
[+] EMBL BM656831 [CCGTTTTTTTTCTTCAACAGCACAAAATACCACTTTGCAAACCTCCGCCTGTCCTGCGTGGGCAGCGGTCCAATCACGTCCAGGCGCGAAATCATCATCAAACAAGCTTCATCCAATCAATCCATTGGTAGTGAGGAAAAGGGTGCGACTGTGGTTTTGTGAAGGAAAATTTATTTTTTAGTGAGAATGTTGGGTCACGACCAATTACGACCTTCATTTAGAATGAAGCTTACATTTTAATGTGGCTTAAACACGATGGAATTGGTTTGATGAACAAAACATTTTGCAACTTGAACTTCACGACGAACCTGTTGCTGCTCTGGAAGGGCGCACATAAATCTTAACGATTGCTTTTTTTCACCTCGTTTTATCCTTGGATCGAGAGCTTGGATGTGTTGCCATGGTTCGTCAAAATAAAACTCGTCGTAATTCCGACTGGATGAATGCTCACCGATCCCGGTGACTACCGGTTGTCGTCTGTTGTGAGCGGCTGGGCAGTGTGATGCGGACGGGGGCTGTTTAGTAAAAGTGGGTGGGCTTAGGACAAGTAAGCAGCGTAAGGTTAGAAAATTGGGAAACTTTAAAATGCGTTTATGGGCGGATAGTTTTTGTCACGATGTTTTTTTCTTCTTCTTCTTCCTGTTTCCCTGCGGCGATCATACATTGGATAATGGAAGGGAACGCGC]
consensusID : consensus_6291#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 682 fasta sequence
[TTCTCGCGTAGTTGTGTGCATTTTTGTCTCACCACTGCTACACTGCAGATTCATTTCGATTTCAAACCCTTATTGGGCTTCGGAAAGAGCAGCATACTATTATTTTATCGGTAGATCAGAATTGTTTTACATATTCACGGCCACGGACGGAGCGAACCGCTTAGTTGCATAATTGAAATATTTTACGGAATTGTGAATAGTATACTTGGTTCGGTTCTAGGGACTGCTACCCGAGCTGCAAGCGTGCAGCACTAACGGGCCTAGCTGCTTGTCCATATTGGGCTTCAGCGGTGTGGTTTTGTGAAGGAAAGTTATTTTTTAGTGAGAATGTTGATCGTGACATTCATTTAGAATGAAGCTTTCATTTGAATGTGGCTTAAACACGATGGAATTGGTTTGATGAACAAAACATTTTGCACCGGTATACTAATTCCCGGTGGGTGTGGATCGAATGGGAATATGAACTGTGAACTTCACGGCGAACCTGTTGCCTGTGCTACTCTGGAAGGGCGCACAGAAATCTTAACAAATGTTTTTTTTCTTCCATCTCGTCTTATCTTTCGATCGAGAGCTTGGATGTGTTGCCATGGTTCGTCAAAATAAAACTCGTCGTAATTCCGACTGGATGAATGCTCACCGATCCCGGTGACTACCGGTTGTCGTCTGTTGTGAGCGGCTGGGC]
[+] EMBL BX624504 [TTCTCGCGTAGTTGTGTGCATTTTTGTCTCACCACTGCTACACTGCAGATTCATTTCGATTTCAAACCCTTATTGGGCTTCGGAAAGAGCAGCATACTATTATTTTATCGGTAGATCAGAATTGTTTTACATATTCACGGCCACGGACGGAGCGAACCGCTTAGTTGCATAATTGAAATATTTTACGGAATTGTGAATAGTATACTTGGTTCGGTTCTAGGGACTGCTACCCGAGCTGCAAGCGTGCAGCACTAACGGGCCTAGCTGCTTGTCCATATTGGGCTTCAGCGGTGTGGTTTTGTGAAGGAAAGTTATTTTTTAGTGAGAATGTTGATCGTGACATTCATTTAGAATGAAGCTTTCATTTGAATGTGGCTTAAACACGATGGAATTGGTTTGATGAACAAAACATTTTGCACCGGTATACTAATTCCCGGTGGGTGTGGATCGAATGGGAATATGAACTGTGAACTTCACGGCGAACCTGTTGCCTGTGCTACTCTGGAAGGGCGCACAGAAATCTTAACAAATGTTTTTTTTCTTCCATCTCGTCTTATCTTTCGATCGAGAGCTTGGATGTGTTGCCATGGTTCGTCAAAATAAAACTCGTCGTAATTCCGACTGGATGAATGCTCACCGATCCCGGTGACTACCGGTTGTCGTCTGTTGTGAGCGGCTGGGC]
consensusID : consensus_6291#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 623 fasta sequence
[GCAGAATCGCGCACGAGGGGGCTTCGGAAAGAGCAGCATACTATTATTTTATCGGTAGATCAGAATTGTTTTACATATTCACGGCCACGGACGGAGCGAACCGCTTAGTTGCATAATTGAAATATTTTACGGAATTGTGAATAGTATACTTGGTTCGGTTCTAGGGACTGCTACCCGAGCTGCAAGCGTGCAGCACTAACGGGCCTAGCTGCTTGTCCATATTGGGCTTCAGCGGTGTGGTTTTGTGAAGGAAAGTTATTTTTTAGTGAGAATGTTGATCGTGACATTCATTTAGAATGAAGCTTTCATTTGAATGTGGCTTAAACACGATGGAATTGGTTTGATGAACAAAACATTTTGCACCGGGTATACTAATTCCCGGTGGGTGTGGATCGAATGGGAATATGAACTGTGAACTTCACGGCGAACCTGTTTGCCTGTGCTACTCTGGAAGGGCGCACAGAAATCTTAACAAATGTTNGTGTTTCTTCCATCTCGTCTTATCTTTCGATCGAGAGCTTGGATGTGTTGCCATGGTTCGTCAAAGATAAAACTCGTCGTAATTCCGACTGGATGAATGCTCACCGATCCCGGTGACTACCGGTTGTCGTCTGTACGTGAGC]
[+] EMBL BX467501 [GCAGAATCGCGCACGAGGGGGCTTCGGAAAGAGCAGCATACTATTATTTTATCGGTAGATCAGAATTGTTTTACATATTCACGGCCACGGACGGAGCGAACCGCTTAGTTGCATAATTGAAATATTTTACGGAATTGTGAATAGTATACTTGGTTCGGTTCTAGGGACTGCTACCCGAGCTGCAAGCGTGCAGCACTAACGGGCCTAGCTGCTTGTCCATATTGGGCTTCAGCGGTGTGGTTTTGTGAAGGAAAGTTATTTTTTAGTGAGAATGTTGATCGTGACATTCATTTAGAATGAAGCTTTCATTTGAATGTGGCTTAAACACGATGGAATTGGTTTGATGAACAAAACATTTTGCACCGGGTATACTAATTCCCGGTGGGTGTGGATCGAATGGGAATATGAACTGTGAACTTCACGGCGAACCTGTTTGCCTGTGCTACTCTGGAAGGGCGCACAGAAATCTTAACAAATGTTNGTGTTTCTTCCATCTCGTCTTATCTTTCGATCGAGAGCTTGGATGTGTTGCCATGGTTCGTCAAAGATAAAACTCGTCGTAATTCCGACTGGATGAATGCTCACCGATCCCGGTGACTACCGGTTGTCGTCTGTACGTGAGC]
consensusID : consensus_6291#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 214 fasta sequence
[CCGCATCATCAAACAAGCTTCATCCAATCAATCCATTGGTAGTGAGGAAAAGGGTGCGACTGTGGTGCAATGGGTCCGATCCACCAATACAATACAGCGTCGTAGACTAGTGCGTTGCGGGAAGCTTTCGGGCCATTTTCGGCCCAGTTTCCAGCCTCCCTCTGGGGTAGCTGCTGCTGTTCCTTTACTGGCTTTGCTTTGTCTCCCAACCGAA]
[+] EMBL BM616568 [CCGCATCATCAAACAAGCTTCATCCAATCAATCCATTGGTAGTGAGGAAAAGGGTGCGACTGTGGTGCAATGGGTCCGATCCACCAATACAATACAGCGTCGTAGACTAGTGCGTTGCGGGAAGCTTTCGGGCCATTTTCGGCCCAGTTTCCAGCCTCCCTCTGGGGTAGCTGCTGCTGTTCCTTTACTGGCTTTGCTTTGTCTCCCAACCGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6291#2 TTCTCGCGTAGTTGTGTGCATTTTTGTCTCACCACTGCTACACTGCAGATTCATTTCGAT 60
consensus_6291#3 -------------------------------------------------------GCAGA 5
consensus_6291#1 ------------------------------------------------------------
consensus_6291#0 ------------------------------------------------------------
consensus_6291#4 ------------------------------------------------------------
consensus_6291#2 TTCAAACCCTTATTGGGCTTCGGAAAGAGCAGCATACTATTATTTTATCGGTAGATCAGA 120
consensus_6291#3 ATCGCGCACG-AGGGGGCTTCGGAAAGAGCAGCATACTATTATTTTATCGGTAGATCAGA 64
consensus_6291#1 ------------------------------------------------------------
consensus_6291#0 ------------TTTGCCTTTGCCAAAACTCTCTACGCTCATCCTAGAAGGTGTGGCGGC 48
consensus_6291#4 ------------------------------------------------------------
consensus_6291#2 ATTGTTTTACATATTCACGGCCACGGACGGAGCGAACCGCTTAGTTGCATAATTGAAATA 180
consensus_6291#3 ATTGTTTTACATATTCACGGCCACGGACGGAGCGAACCGCTTAGTTGCATAATTGAAATA 124
consensus_6291#1 -CCGTTTTTTTTCTTCA---------ACAGCACAAAATACCACTTTGCAAACCTCCGCC- 49
consensus_6291#0 GGCGAGAAGGACGCGTGCGTGAAGAAAATTCAAATGAAACTTCCATCCTTCTCTTCCTC- 107
consensus_6291#4 ------------------------------------------------------------
consensus_6291#2 TTTTACGGAATTGTGAATAGTATACTTGGTTCGGTTCTAGGGACTGCTACCCGAGCTGCA 240
consensus_6291#3 TTTTACGGAATTGTGAATAGTATACTTGGTTCGGTTCTAGGGACTGCTACCCGAGCTGCA 184
consensus_6291#1 -TGTCCTGCGTGGGCAGCGGTCCAATCACGTCCAGGCGCGAAATCATCATCAAA----CA 104
consensus_6291#0 TCTCGCTCTCTCATCATCAAACAAGCTTCATCCAATCAATCCATTGGTAGTGAGGAAACG 167
consensus_6291#4 --------CCGCATCATCAAACAAGCTTCATCCAATCAATCCATTGGTAGTGAGGAAAAG 52
* * ** * * *
consensus_6291#2 AGCGTGCAGCACTAACGGGCCTAGCTGCTTGTCCATATTGGGCTTCAGCGGTGTGGTTTT 300
consensus_6291#3 AGCGTGCAGCACTAACGGGCCTAGCTGCTTGTCCATATTGGGCTTCAGCGGTGTGGTTTT 244
consensus_6291#1 AGC-TTCAT--CCAATCAATCCA-TTGGTAGTGAGGAAAAGGGTGCGAC--TGTGGTTTT 158
consensus_6291#0 GGTGCGCAAT-TTTGTGCGACTG--TGGT-GCAATGGGTCCGATCCACCAATACAATACA 223
consensus_6291#4 G-------------GTGCGACTG--TGGT-GCAATGGGTCCGATCCACCAATACAATACA 96
* ** * * * * * * * *
consensus_6291#2 GTGAAGGAAAGTT-ATTTTTTAGTGAGAATGTTG-----------ATCGTGACATTCATT 348
consensus_6291#3 GTGAAGGAAAGTT-ATTTTTTAGTGAGAATGTTG-----------ATCGTGACATTCATT 292
consensus_6291#1 GTGAAGGAAAATTTATTTTTTAGTGAGAATGTTGGGTCACGACCAATTACGACCTTCATT 218
consensus_6291#0 GCGTCGTAGACTAGTGCGTTGCGGGAAGCTTTCGGGCC-------ATTTTCGGCCCAGTT 276
consensus_6291#4 GCGTCGTAGACTAGTGCGTTGCGGGAAGCTTTCGGGCC-------ATTTTCGGCCCAGTT 149
* * * * * * ** * ** * * * ** **
consensus_6291#2 TAGAATGAAGCTTTCATTTGAATGTGGCTTAAACACGATGGAATTGGTTTGATGAACAAA 408
consensus_6291#3 TAGAATGAAGCTTTCATTTGAATGTGGCTTAAACACGATGGAATTGGTTTGATGAACAAA 352
consensus_6291#1 TAGAATGAAGCTTACATTTTAATGTGGCTTAAACACGATGGAATTGGTTTGATGAACAAA 278
consensus_6291#0 TCCAGCCTCCCTCTGGGGTAGCTGCTGCTGTTCCTTTACTGGCTTTGCTTTGTCTCCCAA 336
consensus_6291#4 TCCAGCCTCCCTCTGGGGTAGCTGCTGCTGTTCCTTTACTGGCTTTGCTTTGTCTCCCAA 209
* * ** * ** *** * * * ** * ** * * **
consensus_6291#2 ACATTTTGCACCGG-TATACTAATTCCCGGTGGGTGTGGATCGAATGGGAATATGAACTG 467
consensus_6291#3 ACATTTTGCACCGGGTATACTAATTCCCGGTGGGTGTGGATCGAATGGGAATATGAACTG 412
consensus_6291#1 ACATTTTGCA--------ACT--------------------------------------- 291
consensus_6291#0 CCAACGAATGTATGGGGTACGGCCGCGAATTGATGCCAAACACAGATGAGCCAGGTTCAG 396
consensus_6291#4 CCGAA------------------------------------------------------- 214
*
consensus_6291#2 TGAACTTCACGGCGAACCTGTT-GCCTGTGCTACTCTGGAAGGGCGCACAGAAATCTTAA 526
consensus_6291#3 TGAACTTCACGGCGAACCTGTTTGCCTGTGCTACTCTGGAAGGGCGCACAGAAATCTTAA 472
consensus_6291#1 TGAACTTCACGACGAACCTGTT-------GCTGCTCTGGAAGGGCGCACATAAATCTTAA 344
consensus_6291#0 CCAGCTGTGCGCCGCAAATTTT--TGTAGGACGGCGTAGAAGAATGTAGACACGTGCAGG 454
consensus_6291#4 ------------------------------------------------------------
consensus_6291#2 CAAATGTTTTT-TTTCTTCCATCTCGTCTTATCTTTCGATCGAGAGCTTGGATGTGTTGC 585
consensus_6291#3 CAAATGTTNGTGTTTCTTCCATCTCGTCTTATCTTTCGATCGAGAGCTTGGATGTGTTGC 532
consensus_6291#1 CGATTGCTTTT-----TTTCACCTCGTTTTATCCTTGGATCGAGAGCTTGGATGTGTTGC 399
consensus_6291#0 CAGCCAGGGGA-GCGGAGGTGTTTCGTTTTAACACAGGCTAAGAAACGGCCAGGCGTTAC 513
consensus_6291#4 ------------------------------------------------------------
consensus_6291#2 CATGGTTCGTCAAA-A---TAAAACTCGTCGTAATTCCGACTGGATGAATGCTCACCGAT 641
consensus_6291#3 CATGGTTCGTCAAAGA---TAAAACTCGTCGTAATTCCGACTGGATGAATGCTCACCGAT 589
consensus_6291#1 CATGGTTCGTCAAA-A---TAAAACTCGTCGTAATTCCGACTGGATGAATGCTCACCGAT 455
consensus_6291#0 ACAAATAAGATAAACAGTTTTTTGCTAATGGTACTGCCACGGTAACAATCGGTTTTGGAG 573
consensus_6291#4 ------------------------------------------------------------
consensus_6291#2 CCCGGTGACTACCGGTTGTCGTCTGT-TGTGAGCGGCTGGGC------------------ 682
consensus_6291#3 CCCGGTGACTACCGGTTGTCGTCTGTACGTGAGC-------------------------- 623
consensus_6291#1 CCCGGTGACTACCGGTTGTCGTCTGT-TGTGAGCGGCTGGGCAGTGTGATGCGGACGGGG 514
consensus_6291#0 CAACATGCGACAATGTACACATACATCCTTGTAGGGAGGGACAGATGATAACATCTGCTC 633
consensus_6291#4 ------------------------------------------------------------
consensus_6291#2 ------------------------------------------------------------
consensus_6291#3 ------------------------------------------------------------
consensus_6291#1 GCTGTTTAGTAAAAGTGGGTGGGCTTAGGACAAGTAAGCAGCGTAAGGTTAGAAAATTGG 574
consensus_6291#0 GTTTTTTTAAGCGCTTAAACCATGTGTGGTTAGGGAGAGAGCGAGCGAGAGAGAGAGAGA 693
consensus_6291#4 ------------------------------------------------------------
consensus_6291#2 ------------------------------------------------------------
consensus_6291#3 ------------------------------------------------------------
consensus_6291#1 GAAACTTTAAAATGCGTTTATGGGCGGATAGTTTTTGTCACGATGTTTTTTTCTTCTTCT 634
consensus_6291#0 GAGAGAGAGAGAGAGAGAGAGAGAGAGA-------------------------------- 721
consensus_6291#4 ------------------------------------------------------------
consensus_6291#2 ----------------------------------------------------
consensus_6291#3 ----------------------------------------------------
consensus_6291#1 TCTTCCTGTTTCCCTGCGGCGATCATACATTGGATAATGGAAGGGAACGCGC 686
consensus_6291#0 ----------------------------------------------------
consensus_6291#4 ----------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||