These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6292#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 816 fasta sequence [CCGCGGACGCGTGGGCTAGTGCTACGAATGGTTAGTTCACACTCAAGAATACTTACAAAGTTTGAATACGAGCATTTACATTTTAGCATTCGTCCAGCAACACATAATTAAATGGCGAATATCTTGTCATTTATTTATCTCCCGCTTCTAGTGGCATTTCTTTTCGATTCCGCAAGCTCAATTAATTGTGACAAAAAAAGAGACAATGTACAATATACCATCAAACAACATTTGTTCTGCAACGGATATGATCCAAAGATACGACCGGCTAAAAGTGAATTTGAATCAATTAATATAACTACGTATGCGGTTTTATATAGTTTCGATATTAGTGAATACAGAAGCGTCATGAGTTTTCAAGTAAATTATTACATGCGTTGGCAAGATTCCTCCTTAGCCTGGAACGCATCGGACTGGTCCAACATTACTACACTAAATATCAACAACGATGAAATTTGGTCCCCTCAGTTTGAAAATATTAACTCAGACTATGAAGGACAACCATCTGTATCCTGTTTGAACCCGGACTGTTTGTTACGCGTAAATGGATATGTGTCTTGTTCGCCAGTTTGCAGAATTTCTGCTAAATGCTCGTCCGACTACTCACGCTGGCCGTTCAACACACTAGTTTGTCGAATGTGGTTCACAAATCGAGATAAAGAACTCGTAGATGAAGTTAACTTTTTACCTGTCATTACATATTTGCCGTCAAATCATCATTTACCTACAACTAAGTGGTGTGTTACCAGTGTTTCATCCAATAAAACACAGTTAAGCATTCCAGGAGCTACCAGCCGCACAGTTGAGGAGTTGGAA] [+] EMBL BM625156 [CCGCGGACGCGTGGGCTAGTGCTACGAATGGTTAGTTCACACTCAAGAATACTTACAAAGTTTGAATACGAGCATTTACATTTTAGCATTCGTCCAGCAACACATAATTAAATGGCGAATATCTTGTCATTTATTTATCTCCCGCTTCTAGTGGCATTTCTTTTCGATTCCGCAAGCTCAATTAATTGTGACAAAAAAAGAGACAATGTACAATATACCATCAAACAACATTTGTTCTGCAACGGATATGATCCAAAGATACGACCGGCTAAAAGTGAATTTGAATCAATTAATATAACTACGTATGCGGTTTTATATAGTTTCGATATTAGTGAATACAGAAGCGTCATGAGTTTTCAAGTAAATTATTACATGCGTTGGCAAGATTCCTCCTTAGCCTGGAACGCATCGGACTGGTCCAACATTACTACACTAAATATCAACAACGATGAAATTTGGTCCCCTCAGTTTGAAAATATTAACTCAGACTATGAAGGACAACCATCTGTATCCTGTTTGAACCCGGACTGTTTGTTACGCGTAAATGGATATGTGTCTTGTTCGCCAGTTTGCAGAATTTCTGCTAAATGCTCGTCCGACTACTCACGCTGGCCGTTCAACACACTAGTTTGTCGAATGTGGTTCACAAATCGAGATAAAGAACTCGTAGATGAAGTTAACTTTTTA ] [+] EMBL BM626883 [CCGCGGACGCGTGGG CGAATGGTTAGTTCACACTCAAGAATACTTACAAAGTTTGAATACGAGCATTTACATTTTAGCATTCGTCCAGCAACACATAATTAAATGGCGAATATCTTGTCATTTATTTATCTCCCGCTTCTAGTGGCATTTCTTTTCGATTCCGCAAGCTCAATTAATTGTGACAAAAAAAGAGACAATGTACAATATACCATCAAACAACATTTGTTCTGCAACGGATATGATCCAAAGATACGACCGGCTAAAAGTGAATTTGAATCAATTAATATAACTACGTATGCGGTTTTATATAGTTTCGATATTAGTGAATACAGAAGCGTCATGAGTTTTCAAGTAAATTATTACATGCGTTGGCAAGATTCCTCCTTAGCCTGGAACGCATCGGACTGGTCCAACATTACTACACTAAATATCAACAACGATGAAATTTGGTCCCCTCAGTTTGAAAATATTAACTCAGACTATGAAGGACAACCATCTGTATCCTGTTTGAACCCGG ] [+] EMBL BX605494 [ ACCAGCTAAAAGTGAATTTGACTCAATCAATATAACTACGTATGCGGGTTTATATAGTTTCGATATTAGTGAATACAGAAGCCTCATGAGTCTTCAAGTGAATTATTACATGCATTGGCAAGATTCCTCCTTAGCCTGGGACGCATCGGACTGGTCCAACATTACTACACTGAATATCAACAACGATGAAATTTGGTCCCCTCAGTTTGAAAATATTAATTCAGATTATGAAGGACAACCATCTGTATCCTGTTTGAGCCCGGACTGTTTGCTACACGAAGATGGAGGTATTTCTTGTTCGCCAGTCTGCAGAATCTCTGCAAAGTGCTCGTCCGACTACTCACGCTGGCCGTTCAACACACTAGTTTGTCGAATGTGGTTCACAAATCGAGATAAAGAACTCGTAGATGAAGTTAACTTCTTACCTGTCATTACATATTTGCCGTCAAATCATCATTTACCTACAACTAAGTGGTGTGTTACCAGTGTTTCATCCAATAAAACACAGTTAAGCATTCCAGGAGCTACCAGCCGCACAGTTGAGGAGTTGGAA] consensusID : consensus_6292#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 569 fasta sequence [CCGCCCACGCGTCCGATTTTAGCATTCGTCCAGCAACACATAATTAAATGGCGAATATCATGTCATTTATTTATCTCCCGCTTCTAGGGGCATTTCTTTTCGATTCCGCAAGCTCAATTAATTGTGACAAAAAAAGAGATAATGTACAATATACCATCAAACAACATTTGTTCTGCAACGGATATGATCCAAAGATACGGCCGGCTAAAAGTGAATTTGACTCAATTAATATAACTACGTATGCAGTTTTATATAGTTTCGATATTAGTGAATATAGAAGCGTCATGAGTTTTCAAGTAAATTATTACATGCGTTGGCAAGATTCCTCCTTAGCCTGGAACGCATCGGACTGGTCCAACATTACTACACTGAATATCAACAACGATGAAATTTGGTCCCCTCAGTTTGAAAATATTAATTCAGATTATGAAGGACAACCATCTGTATCCTGTTTGAACCCGGACTGTTTGTTACGCGTAAATGGATATGTGTCTTGTTCGCCAGTTTGCAGAATTTCTGCAAAATGCTCGTCCGACTACTCACGCTGGCCGTTCAACACACTAGTTTGT] [+] EMBL BM624057 [CCGCCCACGCGTCCGATTTTAGCATTCGTCCAGCAACACATAATTAAATGGCGAATATCATGTCATTTATTTATCTCCCGCTTCTAGGGGCATTTCTTTTCGATTCCGCAAGCTCAATTAATTGTGACAAAAAAAGAGATAATGTACAATATACCATCAAACAACATTTGTTCTGCAACGGATATGATCCAAAGATACGGCCGGCTAAAAGTGAATTTGACTCAATTAATATAACTACGTATGCAGTTTTATATAGTTTCGATATTAGTGAATATAGAAGCGTCATGAGTTTTCAAGTAAATTATTACATGCGTTGGCAAGATTCCTCCTTAGCCTGGAACGCATCGGACTGGTCCAACATTACTACACTGAATATCAACAACGATGAAATTTGGTCCCCTCAGTTTGAAAATATTAATTCAGATTATGAAGGACAACCATCTGTATCCTGTTTGAACCCGGACTGTTTGTTACGCGTAAATGGATATGTGTCTTGTTCGCCAGTTTGCAGAATTTCTGCAAAATGCTCGTCCGACTACTCACGCTGGCCGTTCAACACACTAGTTTGT] consensusID : consensus_6292#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 494 fasta sequence [CCGCGAACGATTAGTTCACACAAAAGAATACATACATAGTTTGAATACGAGTATTTACATTTTAACATACGTTCAGCAACACACAATTAAATGGCGAATAGCTTGTCATTTATTTATCTCCCGCTTCTAGTGGCATTTCTTTTCGATTCCGCAAGCTCAATTAATTGTGACAAAAAAAGAAACAATGTGCAATATACCATCAAACAACATTTGTTCTGCAATGGATATGATCCAAAGATACGACCAGCTAAAAGTGAATTTGACTCAATCAATATAACTACGTATGCGGTTTTATATAGTTTCGATATTGTATGTATAACTTTATTTCATTCAAATCATTACTGTATTTTTTGTTGATTATTTTAATGTACCTTTTTGGCTGAAAGAGTGAATACAGAAGCGTCATGAGTCTTCAAGTGAATTATTACATGTATTGGCAAGATTCCTCCTTAGCCTGGAACGCATCGGACTGGTCCAACATTACTACACTGAAT] [+] EMBL BM621401 [CCGCGAACGATTAGTTCACACAAAAGAATACATACATAGTTTGAATACGAGTATTTACATTTTAACATACGTTCAGCAACACACAATTAAATGGCGAATAGCTTGTCATTTATTTATCTCCCGCTTCTAGTGGCATTTCTTTTCGATTCCGCAAGCTCAATTAATTGTGACAAAAAAAGAAACAATGTGCAATATACCATCAAACAACATTTGTTCTGCAATGGATATGATCCAAAGATACGACCAGCTAAAAGTGAATTTGACTCAATCAATATAACTACGTATGCGGTTTTATATAGTTTCGATATTGTATGTATAACTTTATTTCATTCAAATCATTACTGTATTTTTTGTTGATTATTTTAATGTACCTTTTTGGCTGAAAGAGTGAATACAGAAGCGTCATGAGTCTTCAAGTGAATTATTACATGTATTGGCAAGATTCCTCCTTAGCCTGGAACGCATCGGACTGGTCCAACATTACTACACTGAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6292#0 CCGCGGACGCGTGGGCTAGTGCTACGAATGGTTAGTTCACACTCAAGAATACTTACAAAG 60 consensus_6292#1 ------------------------------------------------------------ consensus_6292#2 ---------------------CCGCGAACGATTAGTTCACACAAAAGAATACATACATAG 39 consensus_6292#0 TTTGAATACGAGCATTTACATTTTAGCATTCGTCCAGCAACACATAATTAAATGGCGAAT 120 consensus_6292#1 ---CCGCCCACGCGTCCG-ATTTTAGCATTCGTCCAGCAACACATAATTAAATGGCGAAT 56 consensus_6292#2 TTTGAATACGAGTATTTACATTTTAACATACGTTCAGCAACACACAATTAAATGGCGAAT 99 * * * ****** *** *** ********** *************** consensus_6292#0 ATCTTGTCATTTATTTATCTCCCGCTTCTAGTGGCATTTCTTTTCGATTCCGCAAGCTCA 180 consensus_6292#1 ATCATGTCATTTATTTATCTCCCGCTTCTAGGGGCATTTCTTTTCGATTCCGCAAGCTCA 116 consensus_6292#2 AGCTTGTCATTTATTTATCTCCCGCTTCTAGTGGCATTTCTTTTCGATTCCGCAAGCTCA 159 * * *************************** **************************** consensus_6292#0 ATTAATTGTGACAAAAAAAGAGACAATGTACAATATACCATCAAACAACATTTGTTCTGC 240 consensus_6292#1 ATTAATTGTGACAAAAAAAGAGATAATGTACAATATACCATCAAACAACATTTGTTCTGC 176 consensus_6292#2 ATTAATTGTGACAAAAAAAGAAACAATGTGCAATATACCATCAAACAACATTTGTTCTGC 219 ********************* * ***** ****************************** consensus_6292#0 AACGGATATGATCCAAAGATACGACCGGCTAAAAGTGAATTTGAATCAATTAATATAACT 300 consensus_6292#1 AACGGATATGATCCAAAGATACGGCCGGCTAAAAGTGAATTTGACTCAATTAATATAACT 236 consensus_6292#2 AATGGATATGATCCAAAGATACGACCAGCTAAAAGTGAATTTGACTCAATCAATATAACT 279 ** ******************** ** ***************** ***** ********* consensus_6292#0 ACGTATGCGGTTTTATATAGTTTCGATATTAGTGAATACAGAAGCGTCATGAGTTTTCAA 360 consensus_6292#1 ACGTATGCAGTTTTATATAGTTTCGATATTAGTGAATATAGAAGCGTCATGAGTTTTCAA 296 consensus_6292#2 ACGTATGCGGTTTTATATAGTTTCGATATT-GTATGTATAA---CTTTAT-----TTCAT 330 ******** ********************* ** ** * * * ** **** consensus_6292#0 GTAAATTATTACATGCGTTGGCAAGATTCCTCCTTAGCCTGGAACGCATCGGACTGGTCC 420 consensus_6292#1 GTAAATTATTACATGCGTTGGCAAGATTCCTCCTTAGCCTGGAACGCATCGGACTGGTCC 356 consensus_6292#2 TCAAATCATTAC-TGTATTTT-----TTGTTGATTATTTT--AATGTACCTTTTTGGCTG 382 **** ***** ** ** ** * *** * ** * * * *** consensus_6292#0 AACATTACTACACTAAA-TATCAACAACGATGAAATTTGGTCCCCTCAGT-TTGAAAATA 478 consensus_6292#1 AACATTACTACACTGAA-TATCAACAACGATGAAATTTGGTCCCCTCAGT-TTGAAAATA 414 consensus_6292#2 AAAGAGTGAATACAGAAGCGTCATGAGTCTTCAAGTGAATTATTACATGTATTGGCAAGA 442 ** * ** ** *** * * ** * * ** *** ** * consensus_6292#0 TTAACTCAGACTATGAAGGACAACCATCTGTATCCTGTTTGAACCCGGACTGTTTGTTAC 538 consensus_6292#1 TTAATTCAGATTATGAAGGACAACCATCTGTATCCTGTTTGAACCCGGACTGTTTGTTAC 474 consensus_6292#2 TTCCTCCTTAGCCTGGAACGCATCGGACTG-GTCCAACATTA--CTACACTGAAT----- 494 ** * * ** * ** * *** *** * * * **** * consensus_6292#0 GCGTAAATGGATATGTGTCTTGTTCGCCAGTTTGCAGAATTTCTGCTAAATGCTCGTCCG 598 consensus_6292#1 GCGTAAATGGATATGTGTCTTGTTCGCCAGTTTGCAGAATTTCTGCAAAATGCTCGTCCG 534 consensus_6292#2 ------------------------------------------------------------ consensus_6292#0 ACTACTCACGCTGGCCGTTCAACACACTAGTTTGTCGAATGTGGTTCACAAATCGAGATA 658 consensus_6292#1 ACTACTCACGCTGGCCGTTCAACACACTAGTTTGT------------------------- 569 consensus_6292#2 ------------------------------------------------------------ consensus_6292#0 AAGAACTCGTAGATGAAGTTAACTTTTTACCTGTCATTACATATTTGCCGTCAAATCATC 718 consensus_6292#1 ------------------------------------------------------------ consensus_6292#2 ------------------------------------------------------------ consensus_6292#0 ATTTACCTACAACTAAGTGGTGTGTTACCAGTGTTTCATCCAATAAAACACAGTTAAGCA 778 consensus_6292#1 ------------------------------------------------------------ consensus_6292#2 ------------------------------------------------------------ consensus_6292#0 TTCCAGGAGCTACCAGCCGCACAGTTGAGGAGTTGGAA 816 consensus_6292#1 -------------------------------------- consensus_6292#2 -------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||