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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6296#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1081 fasta sequence
[GCAGAGTAGCCGCTGTTATTTGTCCCGGGCGAGCCGGGAGCCGACATCAGCAGCTCCTCGTTCATAGGCGAACACTCACGCGAATTGTCAGTGTAGCTGGGCGAGACCGGCGCCGAGCGCGGCATGCCGAACGGCGAGCGAAAGCATTGCGAACCACGCTGGCGTCGCTTCCGGTAGCTTTGATCGATCAGCTTCAGCTCGCTGGACGGATCTATCCGCCAGAAGCTACCCTTGCCAGGTTCGTCTTGCGATCGCGGTACCTTGATGAAGTATCGGTTCAAGCTCAAATTGTGCCGAATAGAGTTCTGCCACCCTTTGTTTGCTCCGGTCCGGTAGTAGGGATAGTTCTTCGAGATGAAGGAATAGATCCCCGAGAGAGTCAGCTGCTTCTCCGGCGAGGCCGAGATAGCTTGTACGATCAGCTGCGCGTAGCTGTACGGTGGCTTATCGCTCTCCAGTGATTGTGTGGCCGGGGCTTGAAATTCGGAATAGTTGTTATTGTTGTTGTTGGTGGTGCCGGTTACGCTGGCCGGGGTGTGCTGATGATGGTGATTGCTGCTGCTGTACTGGGCAAACTCGTGCACGTTCTGCCGTGGGCTGGTGGGGCAAATGTTCGCAGCACTGATCGTCCCGGTAGGGGACGGGTATCCGCTGCCGCCCATGCCGTGCAGCTCACCGCCCCGACAACTGCCGCCGCCTCCCCCACTGCCAGCTCCACCACCACCGCCACCGCCGCCCCGTACGGAGCCGCGAGATACATCGCCGAGCAGACCGACCGTGCCGACCGCACCACCGTGCTCGGAGGGAATTGAAATTTTGAGCGGTGCGTAAATCACACTGGAGGAGGGCGACTTTCCACCACGGTTGTGGTGATAGTGGTGCTGCTGGCCGCTGCCAGCTAGCCCGACGCCGCCGCTACTGTTGCCACTGGCGCCGCCGACGCCGCCGCCGCCCTGCGACATGCCGCCGCTCATCGATGCACCGCTGATGGAGCCAGCGTGCAGCGGGATGCCACCGACCGGACCGGTACCGATCTTGACCGGCGTGTGCTCGTTCAGGTCCACCAATTATACCGTTGTTG]
[-] EMBL BX611268 [GCAGAGTAGCCGCTGTTATTTGTCCCGGGCGAGCCGGGAGCCGACATCAGCAGCTCCTCGTTCATAGGCGAACACTCACGCGAATTGTCAGTGTAGCTGGGCGAGACCGGCGCCGAGCGCGGCATGCCGAACGGCGAGCGAAAGCATTGCGAACCACGCTGGCGTCGCTTCCGGTAGCTTTGATCGATCAGCTTCAGCTCGCTGGACGGATCTATCCGCCAGAAGCTACCCTTGCCAGGTTCGTCTTGCGATCGCGGTACCTTGATGAAGTATCGGTTCAAGCTCAAATTGTGCCGAATAGAGTTCTGCCACCCTTTGTTTGCTCCGGTCCGGTAGTAGGGATAGTTCTTCGAGATGAAGGAATAGATCCCCGAGAGAGTCAGCTGCTTCTCCGGCGAGGCCGAGATAGCTTGTACGATCAGCTGCGCGTAGCTGTACGGTGGCTTATCGCTCTCCAGTGATTGTGTGGCCGGGGCTTGAAATTCGGAATAGTTGTTATTGTTGTTGTTGGTGGTGCCGGTTACGCTGGCCGGGGTGTGCTGATGATGGTGATTGCTGCTGCTGTACTGGGCAAACTCGTGCACGTTCTGCCGTGGGCTGGTGGGGCAAATGTTCGCAGCAC ]
[+] EMBL AGA282756 [ GAGCGAAAGCATTGCGAACCACGCTGGCGTCGCTTCCGGTAGCTTTGATCGATCAGCTTCAGCTCGCTGGACGGATCTATCCGCCAGAAGCTACCCTTGCCAGGTTCGTCTTGCGATCGCGGTACCTTGATGAAGTATCGGTTCAAGCTCAAATTGTGCCGAATAGAGTTCTGCCACCCTTTGTTTGCTCCGGTCCGGTAGTAGGGATAGTTCTTCGAGATGAAGGAATAGATCCCCGAGAGAGTCAGCTGCTTCTCCGGCGAGGCCGAGATAGCTTGTACGATCAGCTGCGCGTAGCTGTACGGTGGCTTATCGCTCTCCAGTGATTGTGTGGCCGGGGCTTGAAATTCGGAATAGTTGTTATTGTTGTTGTTGGT ]
[+] EMBL BM595551 [ ccggcCTCTCCAGTGATTGTGTGGCCGGGGCTTGAAATTCGGAATAGTTGTTATTGTTGTTGTTGGTGGTGCCGGTTACGCTGGCCGGGGTGTGCTGATGATGGTGATTGCTGCTGCTGTACTGGGCAAACTCGTGCACGTTCTGCCGTGGGCTGGTGGGGCAACTGTTCGCAGCACTGATCGTCCCGGTAGGGGACGGGTATCCGCTGCCGCCCATGCCGTGCAGCTCACCGCCCCGACAACTGCCGCCGCCTCCCCCACTGCCAGCTCCACCACCACCGCCACCGCCGCCCCGTACGGAGCCGCGAGATACATCGCCGAGCAGACCGACCGTGCCGACCGCACCACCGTGCTCGGAGGGAATTGAAATTTTGAGCGGTGCGTAAATCACACTGGAGGAGGGCGACTTTCCACCACGGTTGTGGTGATAGTGGTGCTGCTGGCCGCTGCCAGCTAGCCCGACGCCGCCGCTACTGTTGCCACTGGCGCCGCCGACGCCGCCGCCGCCCTGCGACATGCCGCCGCTCATCGATGCACCGCTGATGGAGCCAGCGTGCAGCGGGATGCCACCGACCGGACCGGTACCGATCTTGACCGGCGTGTGCTCGTTCAGGTCCACCAATTATACCGTTGTTG]
consensusID : consensus_6296#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 588 fasta sequence
[TATCCACACAGAGAGCCCTTGCGTCGGCGGAGGATACCAGAGCAAGTTAACATCTTTGGGCGCTTGTTGCCCGGCTCGTAGTCGTCGCTTTCCGTATTCGAGCTGCTCGTCCTCCTCGTACACTTCGGCCTGCTGGTGTTCCGCACTCGCGTACCCGGTGTACTGGTTCTGGTACGAAGACTGCTGAGAGCCGTCGTGTTGTTGCCAGAGTAGCCGCTGTTATTTGGTCCGGGCGAGCCGGGAGCCGACATCAGCAGCTCCTCGTTCATAGGCGAACACTCACGCGAATTGTCAGTGTAGCTGGGCGAGACCGGCGCCGAGCGCGGCATGCCGAACGGCGAGCGAAAGCATTGCGAACCACGCTGGCGTCGCTTCCGGTAGCTTTGATCGATCAGCTTCAGCTCGCTGGACGGATCTATCCGCCAGAAGCTACCCTTGCCAGGTTCGTCTTGCGATCGCGGTACCTTGATGAAGTATCGGTTCAAGCTCAAATTGTGCCGAATAGAGTTCTGCCACCCTTTGTTTGCTCCGGTCCGGATAGTAGGATAGTTTCGTTCGAGATGAAGGAATAGATCTNACCTCTGCGAT]
[-] EMBL AL696345 [TATCCACACAGAGAGCCCTTGCGTCGGCGGAGGATACCAGAGCAAGTTAACATCTTTGGGCGCTTGTTGCCCGGCTCGTAGTCGTCGCTTTCCGTATTCGAGCTGCTCGTCCTCCTCGTACACTTCGGCCTGCTGGTGTTCCGCACTCGCGTACCCGGTGTACTGGTTCTGGTACGAAGACTGCTGAGAGCCGTCGTGTTGTTGCCAGAGTAGCCGCTGTTATTTGGTCCGGGCGAGCCGGGAGCCGACATCAGCAGCTCCTCGTTCATAGGCGAACACTCACGCGAATTGTCAGTGTAGCTGGGCGAGACCGGCGCCGAGCGCGGCATGCCGAACGGCGAGCGAAAGCATTGCGAACCACGCTGGCGTCGCTTCCGGTAGCTTTGATCGATCAGCTTCAGCTCGCTGGACGGATCTATCCGCCAGAAGCTACCCTTGCCAGGTTCGTCTTGCGATCGCGGTACCTTGATGAAGTATCGGTTCAAGCTCAAATTGTGCCGAATAGAGTTCTGCCACCCTTTGTTTGCTCCGGTCCGGATAGTAGGATAGTTTCGTTCGAGATGAAGGAATAGATCTNACCTCTGCGAT]
consensusID : consensus_6296#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 465 fasta sequence
[CCGCTGCTTATCTTGGTCCGGNCGACCCGGGACGCCGACATCAGCAGCTCCTCGTTCATAGCNCGAACACTCACGCGAATTGTCACGTGTANCTGGGCGAGACCGGCGCCGAGCGCGGCATGCCGAACGGCGAGCGAAAGCATTCGCGAACCACGCTGGCGTCGCTTCCGGTACGCTCTTGATCGATCAGCTTCAGCTCGCTGGACGGATCTATCCGCCAGAAGCTACCCTTGCCAGGTTCGTCTTGCGATCGCGGTACCCTTGATGAAGTATCGGTTCAAGCTCAAATTGTGCCGAATAGAGTTCTGCCACCCTTTGTTTGCTCCGGTCCGGTAGTAGGGATAGTTCTTCGAGATGAAGGAATAGATCCCCGAGAGAGTCAGCTGCTTCTCCGGCGAGGCCGAGATAGCTTGTACGATCAGCTGCGCGTAGCTGTACGTANCGACCTCGTGNCGATTCTGCCTC]
[-] EMBL BX469466 [CCGCTGCTTATCTTGGTCCGGNCGACCCGGGACGCCGACATCAGCAGCTCCTCGTTCATAGCNCGAACACTCACGCGAATTGTCACGTGTANCTGGGCGAGACCGGCGCCGAGCGCGGCATGCCGAACGGCGAGCGAAAGCATTCGCGAACCACGCTGGCGTCGCTTCCGGTACGCTCTTGATCGATCAGCTTCAGCTCGCTGGACGGATCTATCCGCCAGAAGCTACCCTTGCCAGGTTCGTCTTGCGATCGCGGTACCCTTGATGAAGTATCGGTTCAAGCTCAAATTGTGCCGAATAGAGTTCTGCCACCCTTTGTTTGCTCCGGTCCGGTAGTAGGGATAGTTCTTCGAGATGAAGGAATAGATCCCCGAGAGAGTCAGCTGCTTCTCCGGCGAGGCCGAGATAGCTTGTACGATCAGCTGCGCGTAGCTGTACGTANCGACCTCGTGNCGATTCTGCCTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6296#0 ------------------------------------------------------------
consensus_6296#2 ------------------------------------------------------------
consensus_6296#1 TATCCACACAGAGAGCCCTTGCGTCGGCGGAGGATACCAGAGCAAGTTAACATCTTTGGG 60
consensus_6296#0 ------------------------------------------------------------
consensus_6296#2 ------------------------------------------------------------
consensus_6296#1 CGCTTGTTGCCCGGCTCGTAGTCGTCGCTTTCCGTATTCGAGCTGCTCGTCCTCCTCGTA 120
consensus_6296#0 ------------------------------------------------------------
consensus_6296#2 ------------------------------------------------------------
consensus_6296#1 CACTTCGGCCTGCTGGTGTTCCGCACTCGCGTACCCGGTGTACTGGTTCTGGTACGAAGA 180
consensus_6296#0 ------------------------GCAGAGTAGCCGCTG-TTAT-TTGTCCCGGGCGAGC 34
consensus_6296#2 ---------------------------------CCGCTGCTTATCTTGGTCCGGNCGACC 27
consensus_6296#1 CTGCTGAGAGCCGTCGTGTTGTTGCCAGAGTAGCCGCTG-TTAT-TTGGTCCGGGCGAGC 238
****** **** *** **** *** *
consensus_6296#0 CGGGA-GCCGACATCAGCAGCTCCTCGTTCATAG-GCGAACACTCACGCGAATTGTCA-G 91
consensus_6296#2 CGGGACGCCGACATCAGCAGCTCCTCGTTCATAGCNCGAACACTCACGCGAATTGTCACG 87
consensus_6296#1 CGGGA-GCCGACATCAGCAGCTCCTCGTTCATAG-GCGAACACTCACGCGAATTGTCA-G 295
***** **************************** ********************** *
consensus_6296#0 TGTAGCTGGGCGAGACCGGCGCCGAGCGCGGCATGCCGAACGGCGAGCGAAAGCATT-GC 150
consensus_6296#2 TGTANCTGGGCGAGACCGGCGCCGAGCGCGGCATGCCGAACGGCGAGCGAAAGCATTCGC 147
consensus_6296#1 TGTAGCTGGGCGAGACCGGCGCCGAGCGCGGCATGCCGAACGGCGAGCGAAAGCATT-GC 354
**** **************************************************** **
consensus_6296#0 GAACCACGCTGGCGTCGCTTCCGGTA-GCT-TTGATCGATCAGCTTCAGCTCGCTGGACG 208
consensus_6296#2 GAACCACGCTGGCGTCGCTTCCGGTACGCTCTTGATCGATCAGCTTCAGCTCGCTGGACG 207
consensus_6296#1 GAACCACGCTGGCGTCGCTTCCGGTA-GCT-TTGATCGATCAGCTTCAGCTCGCTGGACG 412
************************** *** *****************************
consensus_6296#0 GATCTATCCGCCAGAAGCTACCCTTGCCAGGTTCGTCTTGCGATCGCGGTACC-TTGATG 267
consensus_6296#2 GATCTATCCGCCAGAAGCTACCCTTGCCAGGTTCGTCTTGCGATCGCGGTACCCTTGATG 267
consensus_6296#1 GATCTATCCGCCAGAAGCTACCCTTGCCAGGTTCGTCTTGCGATCGCGGTACC-TTGATG 471
***************************************************** ******
consensus_6296#0 AAGTATCGGTTCAAGCTCAAATTGTGCCGAATAGAGTTCTGCCACCCTTTGTTTGCTCCG 327
consensus_6296#2 AAGTATCGGTTCAAGCTCAAATTGTGCCGAATAGAGTTCTGCCACCCTTTGTTTGCTCCG 327
consensus_6296#1 AAGTATCGGTTCAAGCTCAAATTGTGCCGAATAGAGTTCTGCCACCCTTTGTTTGCTCCG 531
************************************************************
consensus_6296#0 GTCCGG-TAGTAGGGATAGTTC--TTCGAGATGAAGGAATAGATCCCCGAGAGAGTCAGC 384
consensus_6296#2 GTCCGG-TAGTAGGGATAGTTC--TTCGAGATGAAGGAATAGATCCCCGAGAGAGTCAGC 384
consensus_6296#1 GTCCGGATAGTAGG-ATAGTTTCGTTCGAGATGAAGGAATAGATCTN-----ACCTCTGC 585
****** ******* ****** ********************* ** **
consensus_6296#0 TGCTTCTCCGGCGAGGCCGAGATAGCTTGTACGATCAGCTGCGCGTAGCTGTACGGTGGC 444
consensus_6296#2 TGCTTCTCCGGCGAGGCCGAGATAGCTTGTACGATCAGCTGCGCGTAGCTGTACG----- 439
consensus_6296#1 GAT--------------------------------------------------------- 588
consensus_6296#0 TTATCGCTCTC-CAGTGATTGTGTGGCCGGGGCTTGAAATTCGGAATAGTTGTTATTGTT 503
consensus_6296#2 -TANCGACCTCGTGNCGATTCTGCCTC--------------------------------- 465
consensus_6296#1 ------------------------------------------------------------
consensus_6296#0 GTTGTTGGTGGTGCCGGTTACGCTGGCCGGGGTGTGCTGATGATGGTGATTGCTGCTGCT 563
consensus_6296#2 ------------------------------------------------------------
consensus_6296#1 ------------------------------------------------------------
consensus_6296#0 GTACTGGGCAAACTCGTGCACGTTCTGCCGTGGGCTGGTGGGGCAAATGTTCGCAGCACT 623
consensus_6296#2 ------------------------------------------------------------
consensus_6296#1 ------------------------------------------------------------
consensus_6296#0 GATCGTCCCGGTAGGGGACGGGTATCCGCTGCCGCCCATGCCGTGCAGCTCACCGCCCCG 683
consensus_6296#2 ------------------------------------------------------------
consensus_6296#1 ------------------------------------------------------------
consensus_6296#0 ACAACTGCCGCCGCCTCCCCCACTGCCAGCTCCACCACCACCGCCACCGCCGCCCCGTAC 743
consensus_6296#2 ------------------------------------------------------------
consensus_6296#1 ------------------------------------------------------------
consensus_6296#0 GGAGCCGCGAGATACATCGCCGAGCAGACCGACCGTGCCGACCGCACCACCGTGCTCGGA 803
consensus_6296#2 ------------------------------------------------------------
consensus_6296#1 ------------------------------------------------------------
consensus_6296#0 GGGAATTGAAATTTTGAGCGGTGCGTAAATCACACTGGAGGAGGGCGACTTTCCACCACG 863
consensus_6296#2 ------------------------------------------------------------
consensus_6296#1 ------------------------------------------------------------
consensus_6296#0 GTTGTGGTGATAGTGGTGCTGCTGGCCGCTGCCAGCTAGCCCGACGCCGCCGCTACTGTT 923
consensus_6296#2 ------------------------------------------------------------
consensus_6296#1 ------------------------------------------------------------
consensus_6296#0 GCCACTGGCGCCGCCGACGCCGCCGCCGCCCTGCGACATGCCGCCGCTCATCGATGCACC 983
consensus_6296#2 ------------------------------------------------------------
consensus_6296#1 ------------------------------------------------------------
consensus_6296#0 GCTGATGGAGCCAGCGTGCAGCGGGATGCCACCGACCGGACCGGTACCGATCTTGACCGG 1043
consensus_6296#2 ------------------------------------------------------------
consensus_6296#1 ------------------------------------------------------------
consensus_6296#0 CGTGTGCTCGTTCAGGTCCACCAATTATACCGTTGTTG 1081
consensus_6296#2 --------------------------------------
consensus_6296#1 --------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||