cluster # 6300

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Anopheles gambiae
cluster # 6300 cluster # 6300 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6300#0 length = 1331 sequences # 4

consensus_6300#1 length = 625 sequences # 1

consensusID : consensus_6300#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1331
fasta sequence

                              [CCGGGACACATTAGTGCAAAGAAGAACGTATAACAGTCCAATCATGAAACAATGTCGCCAACGATGATAACCATCATACACTGCTTGGCTATCGGTATACTGATATTTTGGTGCGGAAAATGGATCATTCATCTGACTGCCATCACGTATGGGAAGATAAAACTACATAAAAAAGCATCCCAACAGCCGCGAGAAACTCCGTATCCCTCGGTGTCGATTCTGAAGCCGCTAATGGGAGTCGATCCAAATTTACAGAACAATTTGGAAACCTTTTTCCTCATGGACTATCCGGTCTACGAGCTGCTTTTTTGCATCGAATCCCCGGATGACCCAGCGGTTGAAGTTGTCAAACGATTATGTGATAAATATCCCAGCATCGAAGCTAAGCTTCTTGTCGGCGGC-TCGAACGTGGGAGTAAACCCAAAGATAAATAATCTCTATCCGGGCTATATGCAGGCTCAATATGAGCTAATAATG-ATTTCCGATGCAGGTATCCGGATGAAGAGTGACACATTGACCGACATGGTGAACCATATGACGGAAAAGGTTGGATTAGTGCATCAGATGCCGTTCGTATGCGACC-GAGAGGGGTTTGCAGCAGCGTTTGAGAAAATATACTTC-GGCACAGTGCAGTCCCGGATCTACTTGTGTGCAGATCTCCTCGGTATTAACTGTCATACGGGAATGTCCTGTTTAATGCGCAAAGACGTGCTAGATCAACTGGGAGGTGTCCAGGCGTTTGGTTGCTATCTGGCCGAAGA-TTTCTTTCTGGCCAAG-G-CATTCCACGATCATAATTGGAAGTTGACGATCAGCAGCCAGCCTGCATGGCAGAACTCTGGCATTTGTGATATTAGCAGCTTTCAGGCGCGCCTTACACGATGGGCAAAGCTGAGAGTGGCCATGGTGCCAACGACCATCCTCCTCGAGCCTATGTCAGAGTGCATCATCGTCGGTATGTTTGCTTGCGGCGCCGCGAAAGTACTCTTCCGATGGAATCCATTGGTGTTTTTCCTCATTCATACACTAGTGTGGTTTCTGTCTGACTGGGTATTGCTGTCGATTATCCAGAATGGGGCGTTACCATTTAATAAGTTTACCTTTTTCGTCGGATGGGCTTTTCGCGAGATCAGCGGACCCTACCTATTCTTTAATGCTTTATGGAATCCAGCTATCAGATGGCGAACTCGTGTGTATAAGCTTGCTTGGGGGG-GCGTTGCGTACGAACTTACATCTCAAATTAAGTCATAATTTGGGCTTACGTTGTTTTCCTCGTCTTAATGTCACTAGTAAATGTATGCAAACGAAAACAAATATTCGGTTTATAAATCACT]

[+] EMBL BM608739             [CCGGGACACATTAGTGCAAAGAAGAACGTATAACAGTCCAATCATGAAACAATGTCGCCAACGATGATAACCATCATACACTGCTTGGCTATCGGTATACTGATATTTTGGTGCGGAAAATGGATCATTCATCTGACTGCCATCACGTATGGGAAGATAAAACTACATAAAAAAGCATCCCAACAGCCGCGAGAAACTCCGTATCCCTCGGTGTCGATTCTGAAGCCGCTAATGGGAGTCGATCCAAATTTACAGAACAATTTGGAAACCTTTTTCCTCATGGACTATCCGGTCTACGAGCTGCTTTTTTGCATCGAATCCCCGGATGACCCAGCGGTTGAAGTTGTCAAACGATTATGTGATAAATATCCCAGCATCGAAGCTAAGCTTCTTGTCGGCGGC TCGAACGTGGGAGTAAACCCAAAGATAAATAATCTCTATCCGGGCTATATGCAGGCTCAATATGAGCTAATAATG ATTTCCGATGCAGGTATCCGGATGAAGAGTGACACATTGACCGACATGGTGAACCATATGACGGAAAAGGTTGGATTAGTGCATCAGATGCCGTTCGTATGCGACCGGAGAGGGGTTTGCAGCAGCGTTTGAGAAAATATACTTCGGGCACAGTGCAGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CNS08W0X             [                                                                                                                                                                                                                                                                              TTTTTCCTCATGGACTATCCGGTCTACGAGCTGCTTTTTTGCATCGAATCCCCGGATGACCCAGCGGTTGAAGTTGTCAAACGATTATGTGATAAATATCCCAGCATCGAAGCTAAGCTTCTTGTCGGCGGC TCGAACGTGGGAGTAAACCCAAAGATAAATAATCTCTATCCGGGCTATATGCAGGCTCAATATGAGCTAATAATG ATTTCCGATGCAGGTATCCGGATGAAGAGTGACACATTGACCGACATGGTGAACCATATGACGGAAAAGGTTGGATTAGTGCATCAGATGCCGTTCGTATGCGACC GAGAGGGGTTTGCAGCAGCGTTTGAGAAAATATACTTC GGCACAGTGCAGTCCCGGATCTACTTGTGTGCAGATCTCCTCGGTATTAACTGTCATACGGGAATGTCCTGTTTAATGCGCAAAGACGTGCTAGATCAACTGGGAGGTGTCCAGGCGTTTGGTTGCTATCTGGCCGAAGA TTTCTTTCTGGCCAAG G CATTCCACGATCATAATTGGAAGTTGACGATCAGCAGCCAGCCTGCATGGCAGAACTCTGGCATTTGTGATATTAGCAGCTTTCAGGCGCGCCTTACACGATGGGCAAAGCTGAGAGTGGCCATGGTGCCAACGACCATCCTCCTCGAGCCTATGTCAGAGTGCATCATCGTCGGTATGTTTGCTTGCGGCGCCGCGAAAGTACTCTTCCGATGGAATCCATTGGTGTTTTTCCTCATTCATACACTAGTGTGGTTTCTGTCTGACTGGGTATTGCTGTCGATTATCCAGAATGGGGCGTTACCATTTAATAAGTTTACCTTTTTCGTCGGATGGGCTTTTCGCGAGATCAGCGGACCCTACCTATTCTTTAATGCTTTATGGAATCCAGCTATCAGATGGCGAACTCGTGTGTATAAGCTTGCTTGGGGGG GCGTTGCGTACGAACTTACATCTCAAATTAAGTCATAATTTGGGCTTACGTTGTTTTCCTCGTCTTAATGTCACTAGTAAATGTATGCAAACGAAAACAAATA                  ]
[+] EMBL CNS08O4O             [                                                                                                                                                                                                                                                                                  TCCTCATGGACTATCCGGTCTACGAGCTGCTTTTTTGCATCGAATCCCCGGATGACCCAGCGGTTGAAGTTGTCAAACGATTATGTGATAAATATCCCAGCATCGAAGCTAAGCTTCTTGTCGGCGGCATCGAACGTGGGAGTAAACCCAAAGATAAATAATCTCTATCCGGGCTATATGCAGGCTCAATATGAGCTAATAATGCATTTCCGATGCAGGTATCCGGATGAAGAGTGAAACATTGACCGACATGGTGAACCATATGACGGAAAAGGTTGGATTAGTGCATCAGATGCCGTTCGTATGCGACC GAGAGGGGTTTGCAGCAGCGTTTGAGAAAATATACTTC GGCACAGTGCAGTCCCGGATCTACTTGTGTGCAGATCTCCTCGGTATTAACTGTCATACGGGAATGTCCTGTTTAATGCGCAAAGACGTGCTAGATCAACTGGGAGGTGTCCAGGCGTTTGGTTGCTATCTGGCCGAAGATTTTCTTTCTGGCCAAGAGACATTCCACGATCATAATTGGAAGTTGACGATCAGCAGCCAGCCTGCATGGCAGAACTCTGGCATTTGTGATATTAGCAGCTTTCAGGCGCGAAAAAAAAGATGGGCAAAGCTGAGAGTGGCCATGGTGCCAACGCCCATCCTCCTCGCGCCTATGTCAGAGTGCATCATC                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CNS08W0Y             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GGCGAACTCGTGTGTATAAGCTTCCTTGGGGGGCGCGTTGCGTACGAACTTACATCTCAAATTAAGTCATAATTTGGGCTTACGTTGTTTTCCTCGTCTTAATGTCACTAGTAAATGTATGCAAACGAAAACAAATATTCGGTTTATAAATCACT]




>consensus_6300#0
CCGGGACACATTAGTGCAAAGAAGAACGTATAACAGTCCAATCATGAAACAATGTCGCCA
ACGATGATAACCATCATACACTGCTTGGCTATCGGTATACTGATATTTTGGTGCGGAAAA
TGGATCATTCATCTGACTGCCATCACGTATGGGAAGATAAAACTACATAAAAAAGCATCC
CAACAGCCGCGAGAAACTCCGTATCCCTCGGTGTCGATTCTGAAGCCGCTAATGGGAGTC
GATCCAAATTTACAGAACAATTTGGAAACCTTTTTCCTCATGGACTATCCGGTCTACGAG
CTGCTTTTTTGCATCGAATCCCCGGATGACCCAGCGGTTGAAGTTGTCAAACGATTATGT
GATAAATATCCCAGCATCGAAGCTAAGCTTCTTGTCGGCGGCTCGAACGTGGGAGTAAAC
CCAAAGATAAATAATCTCTATCCGGGCTATATGCAGGCTCAATATGAGCTAATAATGATT
TCCGATGCAGGTATCCGGATGAAGAGTGACACATTGACCGACATGGTGAACCATATGACG
GAAAAGGTTGGATTAGTGCATCAGATGCCGTTCGTATGCGACCGAGAGGGGTTTGCAGCA
GCGTTTGAGAAAATATACTTCGGCACAGTGCAGTCCCGGATCTACTTGTGTGCAGATCTC
CTCGGTATTAACTGTCATACGGGAATGTCCTGTTTAATGCGCAAAGACGTGCTAGATCAA
CTGGGAGGTGTCCAGGCGTTTGGTTGCTATCTGGCCGAAGATTTCTTTCTGGCCAAGGCA
TTCCACGATCATAATTGGAAGTTGACGATCAGCAGCCAGCCTGCATGGCAGAACTCTGGC
ATTTGTGATATTAGCAGCTTTCAGGCGCGCCTTACACGATGGGCAAAGCTGAGAGTGGCC
ATGGTGCCAACGACCATCCTCCTCGAGCCTATGTCAGAGTGCATCATCGTCGGTATGTTT
GCTTGCGGCGCCGCGAAAGTACTCTTCCGATGGAATCCATTGGTGTTTTTCCTCATTCAT
ACACTAGTGTGGTTTCTGTCTGACTGGGTATTGCTGTCGATTATCCAGAATGGGGCGTTA
CCATTTAATAAGTTTACCTTTTTCGTCGGATGGGCTTTTCGCGAGATCAGCGGACCCTAC
CTATTCTTTAATGCTTTATGGAATCCAGCTATCAGATGGCGAACTCGTGTGTATAAGCTT
GCTTGGGGGGGCGTTGCGTACGAACTTACATCTCAAATTAAGTCATAATTTGGGCTTACG
TTGTTTTCCTCGTCTTAATGTCACTAGTAAATGTATGCAAACGAAAACAAATATTCGGTT
TATAAATCACT

consensusID : consensus_6300#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 625
fasta sequence

                              [TGGATTGACTATACTAGGCCGAAGATTTACTATTACTGGCCAAGGCATTCCACGATCATAATTGGAAGTTGACGATCAGCAGCCAGCCTGCATGGCAGAACTCTGGCATTTGTGATATTAGCAGCTTTCAGGCGCGCCTTACACGATGGGCAAAGCTGAGAGTGGCCATGGTGCCAACGACCATCCTCCTCGAGCCTATGTCAGAGTGCATCATCGTCGGTATGTTTGCTTGCGGCGCCGCGAAAGTACTCTTCCGATGGAATCCATTGGTGTTTTTCCTCATTCATACACTAGTGTGGTTTCTGTCTGACTGGGTATTGCTGTCGATCATCCAGAATGGGGCGTTACCATTTAATAAGTATACCTTTTTCGTCGGATGGGCTTTTCGCGAGATCAGCGGACCCTACCTATCCTTTAATGCTTTATGGAATCCAGCTATCAGATGGCGAACTCGTGTGTATAAGCTTGCTTGGGGGGGCGTTGCGTACGAACTTACATCTCAAATTAAGTCATAATNTGGGCTTACGTCGTTTTATTTTCTATGCTTATGTCTCTACTATTCGAACAAATTGCGTTCATAAGGANNACTTCATGAGTGAGCCATCTTTTTAAGCAAGCGCACATG]

[+] EMBL BX624223             [TGGATTGACTATACTAGGCCGAAGATTTACTATTACTGGCCAAGGCATTCCACGATCATAATTGGAAGTTGACGATCAGCAGCCAGCCTGCATGGCAGAACTCTGGCATTTGTGATATTAGCAGCTTTCAGGCGCGCCTTACACGATGGGCAAAGCTGAGAGTGGCCATGGTGCCAACGACCATCCTCCTCGAGCCTATGTCAGAGTGCATCATCGTCGGTATGTTTGCTTGCGGCGCCGCGAAAGTACTCTTCCGATGGAATCCATTGGTGTTTTTCCTCATTCATACACTAGTGTGGTTTCTGTCTGACTGGGTATTGCTGTCGATCATCCAGAATGGGGCGTTACCATTTAATAAGTATACCTTTTTCGTCGGATGGGCTTTTCGCGAGATCAGCGGACCCTACCTATCCTTTAATGCTTTATGGAATCCAGCTATCAGATGGCGAACTCGTGTGTATAAGCTTGCTTGGGGGGGCGTTGCGTACGAACTTACATCTCAAATTAAGTCATAATNTGGGCTTACGTCGTTTTATTTTCTATGCTTATGTCTCTACTATTCGAACAAATTGCGTTCATAAGGANNACTTCATGAGTGAGCCATCTTTTTAAGCAAGCGCACATG]




>consensus_6300#1
TGGATTGACTATACTAGGCCGAAGATTTACTATTACTGGCCAAGGCATTCCACGATCATA
ATTGGAAGTTGACGATCAGCAGCCAGCCTGCATGGCAGAACTCTGGCATTTGTGATATTA
GCAGCTTTCAGGCGCGCCTTACACGATGGGCAAAGCTGAGAGTGGCCATGGTGCCAACGA
CCATCCTCCTCGAGCCTATGTCAGAGTGCATCATCGTCGGTATGTTTGCTTGCGGCGCCG
CGAAAGTACTCTTCCGATGGAATCCATTGGTGTTTTTCCTCATTCATACACTAGTGTGGT
TTCTGTCTGACTGGGTATTGCTGTCGATCATCCAGAATGGGGCGTTACCATTTAATAAGT
ATACCTTTTTCGTCGGATGGGCTTTTCGCGAGATCAGCGGACCCTACCTATCCTTTAATG
CTTTATGGAATCCAGCTATCAGATGGCGAACTCGTGTGTATAAGCTTGCTTGGGGGGGCG
TTGCGTACGAACTTACATCTCAAATTAAGTCATAATNTGGGCTTACGTCGTTTTATTTTC
TATGCTTATGTCTCTACTATTCGAACAAATTGCGTTCATAAGGANNACTTCATGAGTGAG
CCATCTTTTTAAGCAAGCGCACATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6300#0      CCGGGACACATTAGTGCAAAGAAGAACGTATAACAGTCCAATCATGAAACAATGTCGCCA 60
consensus_6300#1      ------------------------------------------------------------
                                                                                  

consensus_6300#0      ACGATGATAACCATCATACACTGCTTGGCTATCGGTATACTGATATTTTGGTGCGGAAAA 120
consensus_6300#1      ------------------------------------------------------------
                                                                                  

consensus_6300#0      TGGATCATTCATCTGACTGCCATCACGTATGGGAAGATAAAACTACATAAAAAAGCATCC 180
consensus_6300#1      ------------------------------------------------------------
                                                                                  

consensus_6300#0      CAACAGCCGCGAGAAACTCCGTATCCCTCGGTGTCGATTCTGAAGCCGCTAATGGGAGTC 240
consensus_6300#1      ------------------------------------------------------------
                                                                                  

consensus_6300#0      GATCCAAATTTACAGAACAATTTGGAAACCTTTTTCCTCATGGACTATCCGGTCTACGAG 300
consensus_6300#1      ------------------------------------------------------------
                                                                                  

consensus_6300#0      CTGCTTTTTTGCATCGAATCCCCGGATGACCCAGCGGTTGAAGTTGTCAAACGATTATGT 360
consensus_6300#1      ------------------------------------------------------------
                                                                                  

consensus_6300#0      GATAAATATCCCAGCATCGAAGCTAAGCTTCTTGTCGGCGGCTCGAACGTGGGAGTAAAC 420
consensus_6300#1      ------------------------------------------------------------
                                                                                  

consensus_6300#0      CCAAAGATAAATAATCTCTATCCGGGCTATATGCAGGCTCAATATGAGCTAATAATGATT 480
consensus_6300#1      ------------------------------------------------------------
                                                                                  

consensus_6300#0      TCCGATGCAGGTATCCGGATGAAGAGTGACACATTGACCGACATGGTGAACCATATGACG 540
consensus_6300#1      ------------------------------------------------------------
                                                                                  

consensus_6300#0      GAAAAGGTTGGATTAGTGCATCAGATGCCGTTCGTATGCGACCGAGAGGGGTTTGCAGCA 600
consensus_6300#1      ------------------------------------------------------------
                                                                                  

consensus_6300#0      GCGTTTGAGAAAATATACTTCGGCACAGTGCAGTCCCGGATCTACTTGTGTGCAGATCTC 660
consensus_6300#1      ------------------------------------------------------------
                                                                                  

consensus_6300#0      CTCGGTATTAACTGTCATACGGGAATGTCCTGTTTAATGCGCAAAGACGTGCTAGATCAA 720
consensus_6300#1      ------------------------------------------------------------
                                                                                  

consensus_6300#0      CTGGGAGGTGTCCAGGCGTTTGGTTGCTATCTGGCCGAAGATTTC---TTTCTGGCCAAG 777
consensus_6300#1      ---------------TGGATTGACTA-TACTAGGCCGAAGATTTACTATTACTGGCCAAG 44
                                       * ***  *  **   ************    ** *********

consensus_6300#0      GCATTCCACGATCATAATTGGAAGTTGACGATCAGCAGCCAGCCTGCATGGCAGAACTCT 837
consensus_6300#1      GCATTCCACGATCATAATTGGAAGTTGACGATCAGCAGCCAGCCTGCATGGCAGAACTCT 104
                      ************************************************************

consensus_6300#0      GGCATTTGTGATATTAGCAGCTTTCAGGCGCGCCTTACACGATGGGCAAAGCTGAGAGTG 897
consensus_6300#1      GGCATTTGTGATATTAGCAGCTTTCAGGCGCGCCTTACACGATGGGCAAAGCTGAGAGTG 164
                      ************************************************************

consensus_6300#0      GCCATGGTGCCAACGACCATCCTCCTCGAGCCTATGTCAGAGTGCATCATCGTCGGTATG 957
consensus_6300#1      GCCATGGTGCCAACGACCATCCTCCTCGAGCCTATGTCAGAGTGCATCATCGTCGGTATG 224
                      ************************************************************

consensus_6300#0      TTTGCTTGCGGCGCCGCGAAAGTACTCTTCCGATGGAATCCATTGGTGTTTTTCCTCATT 1017
consensus_6300#1      TTTGCTTGCGGCGCCGCGAAAGTACTCTTCCGATGGAATCCATTGGTGTTTTTCCTCATT 284
                      ************************************************************

consensus_6300#0      CATACACTAGTGTGGTTTCTGTCTGACTGGGTATTGCTGTCGATTATCCAGAATGGGGCG 1077
consensus_6300#1      CATACACTAGTGTGGTTTCTGTCTGACTGGGTATTGCTGTCGATCATCCAGAATGGGGCG 344
                      ******************************************** ***************

consensus_6300#0      TTACCATTTAATAAGTTTACCTTTTTCGTCGGATGGGCTTTTCGCGAGATCAGCGGACCC 1137
consensus_6300#1      TTACCATTTAATAAGTATACCTTTTTCGTCGGATGGGCTTTTCGCGAGATCAGCGGACCC 404
                      **************** *******************************************

consensus_6300#0      TACCTATTCTTTAATGCTTTATGGAATCCAGCTATCAGATGGCGAACTCGTGTGTATAAG 1197
consensus_6300#1      TACCTATCCTTTAATGCTTTATGGAATCCAGCTATCAGATGGCGAACTCGTGTGTATAAG 464
                      ******* ****************************************************

consensus_6300#0      CTTGCTTGGGGGGGCGTTGCGTACGAACTTACATCTCAAATTAAGTCATAATTTGGGCTT 1257
consensus_6300#1      CTTGCTTGGGGGGGCGTTGCGTACGAACTTACATCTCAAATTAAGTCATAATNTGGGCTT 524
                      **************************************************** *******

consensus_6300#0      ACGTTGTTTTCCTC---GTCTTAATGTCACTAGTA----AATGTATGCAAACGAAAACAA 1310
consensus_6300#1      ACGTCGTTTTATTTTCTATGCTTATGTCTCTACTATTCGAACAAATTGCGTTCATAAGGA 584
                      **** *****  *     *  * ***** *** **    **   **       * **  *

consensus_6300#0      ATATTCGGTTTATAAATCACT-------------------- 1331
consensus_6300#1      NNACTTCATGAGTGAGCCATCTTTTTAAGCAAGCGCACATG 625
                        * *   *   * *  **