cluster # 6302

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Anopheles gambiae
cluster # 6302 cluster # 6302 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6302#0 length = 860 sequences # 4

consensus_6302#1 length = 708 sequences # 1

consensusID : consensus_6302#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 860
fasta sequence

                              [GCCTTTTTTTTTTTTTGTTTTGTTACACGATATTGTTAAGTTTATTGTTAAAAGCGAAACATTTACATTCGACCAACCAAACTACGTATCGAGCAATGTGCCGCGCGTCTTTTTCGGTGGCGGTGGTTCAATCTTTTCCTTCAGCACGTCCTCATTCGTCTTGCCGCCCTTTCGCTCGAGCTGTTTCTCGATGATGCGCGCATTGTTGGCGTAGCTGTCCGCTACCTCCCGTGCCTCAATTTCGTCCTCTTCCTCGTCGATAGTCGACACGGTTACCGAGCTGAACTTGCCCATGTTCTTCGTGTGCTTCGTGACCATCACCTTCTTCGGTTCAAGCGTCGGATTCAGGCTGGCGCTCGGCGTTTTGATTATTTCCGATATTTTGGCTTCGCTCTTGCACTTCA-CCAGCGCTCGCTTGATC-ACGAACGTCACCTGCGAATCGTTACTGTGCCGGTAGTACAGCGGTAGGCCACACTTTTTGCACTT-CAAGCGGTGCTGCTTTTCGATGCCCGC-TTCCCGCT-GGATGAAGACTGTTTCGCTCGGGTCCGCATTTACCTTGTTGGCGTGCCGGGCACTGTCTATGACGCGGGCCCCATCCAACTGCCGGAGGGGTAGTTTTTCTAGTGTGCAATCCAGAATCAAGCTCATTTGTCCACACAAGCAGTAGTAGATGTTGAGCGGGCCCGTTTCATTGTACTCTTCTTTGTCCTTTGAATCGGAACAAACAATACTACGCGACACTACTTTCGGCATTTTGTTTTACTGAAAATACTGTAAGC-AATTGTGTTTCTGCTTATCCACCAATTTGTTTACGGGATTCACGAAGGCCCTTGTTTACGTTTGCTGCATATTCCAGTAGG]

[+] EMBL CNS091OJ             [GCCTTTTTTTTTTTTTGTTTTGTTACACGATATTGTTAAGTTTATTGTTAAAAGCGAAACATTTACATTCGACCAACCAAACTACGTATCGAGCAATGTGCCGCGCGTCTTTTTCGGTGGCGGTGGTTCAATCTTTTCCTTCAGCACGTCCTCATTCGTCTTGCCGCCCTTTCGCTCGAGCTGTTTCTCGATGATGCGCGCATTGTTGGCGTAGCTGTCCGCTACCTCCCGTGCCTCAATTTCGTCCTCTTCCTCGTCGATAGTCGACACGGTTACCGAGCTGAACTTGCCCATGTTCTTCGTGTGCTTCGTGACCATCACCTTCTTCGGTTCAAGCGTCGGATTCAGGCTGGCGCTCGGCGTTTTGATTATTTCCGATATTTTGGCTTCGCTCTTGCACTTCA CCAGCGCTCGCTTGATC ACGAACGTCACCTGCGAATCGTTACTGTGCCGGTAGTACAGCGGTAGGCCACACTTTTTGCACTT CAAGCGGTGCTGCTTTTCGATGCCCGC TTCCCGCT GGATGAAGACTGTTTCGCTCGGGTCCGCATTTACCTTGTTGGCGTGCCGGGCACTGTCTATGACGCGGGCCCCATCCAACTGCCGGAGGGGTAGTTTTTCTAGTGTGCAATCCAGAATCAAGCTCATTTGTCCACACAAGCAGTAGTAGATGTTGAGCGGGCCCGTTTCATTGTACTCTTCTTTGTCCT                                                                                                                                                       ]
[-] EMBL BM608759             [                        ACACGATATTGTTAAGTTTATTGTTAAAAGCGAAACATTTACATTCGACCGACCAAACTACGTATCGAGCAATGTGCCGCGCGTCTTTTTCGGTGGCGGTGGTTCAATCTTTTCCTTCAGCACGTCCTCATTCGTCTTGCCGg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CNS091OI             [                                                                                                                                                                                CGAGCTGTTTCTCGATGATGCGCGCATTGTTGGCGTAGCTGTCCGCTACCTCCCGTGCCTCAATTTCGTCCTCTTCCTCGTCGATAGTCGACACGGTTACCGAGCTGAACTTGCCCATGTTCTTCGTGTGCTTCGTGACCATCACCTTCTTCGGTTCAAGCGTCGGATTCAGGCTGGCGCTCGGCGTTTTGATTATTTCCGATATTTTGGCTTCGCTCTTGCACTTCA CCAGCGCTCGCTTGATC ACGAACGTCACCTGCGAATCGTTACTGTGCCGGTAGTACAGCGGTAGGCCACACTTTTTGCACTT CAAGCGGTGCTGCTTTTCGATGCCCGC TTCCCGCT GGATGAAGACTGTTTCGCTCGGGTCCGCATTTACCTTGTTGGCGTGCCGGGCACTGTCTATGACGCGGGCCCCATCCAACTGCCGGAGGGGTAGTTTTTCTAGTGTGCAATCCAGAATCAAGCTCATTTGTCCACACAAGCAGTAGTAGATGTTGAGCGGGCCCGTTTCATTGTACTCTTCTTTGTCCTTTGAATCGGAACAAACAATACTACGCGACACTACTTTCGGCATTTTGTTTTACTGAAAATACTGTAAGC AATTGTGTTTCTGCTTATCCACCAATTTGTTTACGGGATTCACGAAGGCCCTTGTTTACGTTTGCTGCATATTCCAGTAGG]
[-] EMBL BX619324             [                                                                                                                                                                                                                                                                                                                                                                                                        tnnTGCACTTCACCCAGCGCTCGCTTGATCAACGAACGTCACCTGCGGATCGTTACTGTGCCGGTAGTACAGCGGTAGGCCACACTTTTTGCACTTCCAAGCGGTGCTGCTTTTCGATGCCCGCTTTCCCGCTGGGATGAAGACTGTTTCGCTCGGGTCCGCATTTACCTTGTTGGCGTGCCGGGCACTGTCTATGACGCGGGCCCCATCCAACTGCCGGAGGGGTAGTTTTTCTAGTGTGCAATCCAGAATCAAGCTCATTTGTCCACACAAGCAGTAGTAGATGTTGAGCGGGCCCGTTTCATTGTACTCTTCTTTGTCCTTTGAATCGGAACAAACAATACTACGCGACACTACTTTCGGCATTTTGTTTTACTGAAAATACTGTAAGCNCATTGTGTTCCTGTTTATCCACCAATTTATTTACag                                             ]




>consensus_6302#0
GCCTTTTTTTTTTTTTGTTTTGTTACACGATATTGTTAAGTTTATTGTTAAAAGCGAAAC
ATTTACATTCGACCAACCAAACTACGTATCGAGCAATGTGCCGCGCGTCTTTTTCGGTGG
CGGTGGTTCAATCTTTTCCTTCAGCACGTCCTCATTCGTCTTGCCGCCCTTTCGCTCGAG
CTGTTTCTCGATGATGCGCGCATTGTTGGCGTAGCTGTCCGCTACCTCCCGTGCCTCAAT
TTCGTCCTCTTCCTCGTCGATAGTCGACACGGTTACCGAGCTGAACTTGCCCATGTTCTT
CGTGTGCTTCGTGACCATCACCTTCTTCGGTTCAAGCGTCGGATTCAGGCTGGCGCTCGG
CGTTTTGATTATTTCCGATATTTTGGCTTCGCTCTTGCACTTCACCAGCGCTCGCTTGAT
CACGAACGTCACCTGCGAATCGTTACTGTGCCGGTAGTACAGCGGTAGGCCACACTTTTT
GCACTTCAAGCGGTGCTGCTTTTCGATGCCCGCTTCCCGCTGGATGAAGACTGTTTCGCT
CGGGTCCGCATTTACCTTGTTGGCGTGCCGGGCACTGTCTATGACGCGGGCCCCATCCAA
CTGCCGGAGGGGTAGTTTTTCTAGTGTGCAATCCAGAATCAAGCTCATTTGTCCACACAA
GCAGTAGTAGATGTTGAGCGGGCCCGTTTCATTGTACTCTTCTTTGTCCTTTGAATCGGA
ACAAACAATACTACGCGACACTACTTTCGGCATTTTGTTTTACTGAAAATACTGTAAGCA
ATTGTGTTTCTGCTTATCCACCAATTTGTTTACGGGATTCACGAAGGCCCTTGTTTACGT
TTGCTGCATATTCCAGTAGG

consensusID : consensus_6302#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 708
fasta sequence

                              [CACGGCACGTCCCTCCATTTCCGGTCCTGTGCCGGCCCCTTTTNCGTCTCGAACCTGTTTTNCTCGGATGGAATGCCGCCGCCATTTGTTTGGCCNGTAGCTTGTCCCGGCCTACCTCCCCGGTGCCTTCAAATTTTCGTCCTCTTCCTCGTCGATAGTCGACACGGTTACCGAGCTGAACTTGCCCATGTTCTTCGTGTGCTTCGTGACCATCACCTTCTTCGGTTCAAGCGTCGGATTCAGGCTGGCGCTCGGCGTTTTGATTATTTCCGATATTTTGGCTTCGCTCTTGCACTTCACCAGCGCTCGCTTGATCACGAACGTCACCTGCGGATCGTTACTGTGCCGGTAGTACAGCGGTAGGCCACACTTTTTGCACTTCAAGCGGTGCTGCTTTTCGATGCCCGCTTCCCGCTGGATGAAGACTGTTTCGCTCGGGTCCGCATTTACCTTGTTGGCGTGCCGGGCACTGTCTATGACGCGGGCCCCATCCAACTGCCGGAGGGGTAGTTTTTCTAGTGTGCAATCCAGAATCAAGCTCATTTGTCCACACAAGCAGTAGTAGATGTTGAGCGGGCCCGTTTCATTGTACTCTTCTTTGTCCTTTGAATCGGAACAAACAATACTACGCGACACTACTTTCGGCATTTTGTTTTACTGAAAATGACTGTAAGCAATTGTGTTCCTCCATCGTGCCGATTCTTGGCC]

[-] EMBL BX468909             [CACGGCACGTCCCTCCATTTCCGGTCCTGTGCCGGCCCCTTTTNCGTCTCGAACCTGTTTTNCTCGGATGGAATGCCGCCGCCATTTGTTTGGCCNGTAGCTTGTCCCGGCCTACCTCCCCGGTGCCTTCAAATTTTCGTCCTCTTCCTCGTCGATAGTCGACACGGTTACCGAGCTGAACTTGCCCATGTTCTTCGTGTGCTTCGTGACCATCACCTTCTTCGGTTCAAGCGTCGGATTCAGGCTGGCGCTCGGCGTTTTGATTATTTCCGATATTTTGGCTTCGCTCTTGCACTTCACCAGCGCTCGCTTGATCACGAACGTCACCTGCGGATCGTTACTGTGCCGGTAGTACAGCGGTAGGCCACACTTTTTGCACTTCAAGCGGTGCTGCTTTTCGATGCCCGCTTCCCGCTGGATGAAGACTGTTTCGCTCGGGTCCGCATTTACCTTGTTGGCGTGCCGGGCACTGTCTATGACGCGGGCCCCATCCAACTGCCGGAGGGGTAGTTTTTCTAGTGTGCAATCCAGAATCAAGCTCATTTGTCCACACAAGCAGTAGTAGATGTTGAGCGGGCCCGTTTCATTGTACTCTTCTTTGTCCTTTGAATCGGAACAAACAATACTACGCGACACTACTTTCGGCATTTTGTTTTACTGAAAATGACTGTAAGCAATTGTGTTCCTCCATCGTGCCGATTCTTGGCC]




>consensus_6302#1
CACGGCACGTCCCTCCATTTCCGGTCCTGTGCCGGCCCCTTTTNCGTCTCGAACCTGTTT
TNCTCGGATGGAATGCCGCCGCCATTTGTTTGGCCNGTAGCTTGTCCCGGCCTACCTCCC
CGGTGCCTTCAAATTTTCGTCCTCTTCCTCGTCGATAGTCGACACGGTTACCGAGCTGAA
CTTGCCCATGTTCTTCGTGTGCTTCGTGACCATCACCTTCTTCGGTTCAAGCGTCGGATT
CAGGCTGGCGCTCGGCGTTTTGATTATTTCCGATATTTTGGCTTCGCTCTTGCACTTCAC
CAGCGCTCGCTTGATCACGAACGTCACCTGCGGATCGTTACTGTGCCGGTAGTACAGCGG
TAGGCCACACTTTTTGCACTTCAAGCGGTGCTGCTTTTCGATGCCCGCTTCCCGCTGGAT
GAAGACTGTTTCGCTCGGGTCCGCATTTACCTTGTTGGCGTGCCGGGCACTGTCTATGAC
GCGGGCCCCATCCAACTGCCGGAGGGGTAGTTTTTCTAGTGTGCAATCCAGAATCAAGCT
CATTTGTCCACACAAGCAGTAGTAGATGTTGAGCGGGCCCGTTTCATTGTACTCTTCTTT
GTCCTTTGAATCGGAACAAACAATACTACGCGACACTACTTTCGGCATTTTGTTTTACTG
AAAATGACTGTAAGCAATTGTGTTCCTCCATCGTGCCGATTCTTGGCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6302#0      GCCTTTTTTTTTTTTTGTTTTGTTACACGATATTGTTAAGTTTATTGTTAAAAGCGAAAC 60
consensus_6302#1      ------------------------------------------------------------
                                                                                  

consensus_6302#0      ATTTACATTCGACCAACCAAACTACGTATCGAGCAATGTGCCGCGCGTCTTTTTCGGTGG 120
consensus_6302#1      -------------------------------------------------------CACGG 5
                                                                                **

consensus_6302#0      CG-GTGGTTCAATCTTT--TCCTTCAGCACGTCCTCATTCGTCTTGCCGCCCTTTCGCTC 177
consensus_6302#1      CACGTCCCTCCATTTCCGGTCCTGTGCCGGCCCCTTTTNCGTCTCGAACCTGTTTTNCTC 65
                      *  **   ** ** *    ****    *    ***  * ***** *   *  ***  ***

consensus_6302#0      GAGCTGTTTCTCGATGATGCGCGCATTGTTGGCGTAGCTGTCCG--CTACCTCCC--GTG 233
consensus_6302#1      GGATGGAATGCCGCCGCCATTTGTTTGGCCNGTAGCTTGTCCCGGCCTACCTCCCCGGTG 125
                      *    *  *  **  *      *  * *   *         ***  *********  ***

consensus_6302#0      CCTCAA---TTTCGTCCTCTTCCTCGTCGATAGTCGACACGGTTACCGAGCTGAACTTGC 290
consensus_6302#1      CCTTCAAATTTTCGTCCTCTTCCTCGTCGATAGTCGACACGGTTACCGAGCTGAACTTGC 185
                      ***  *   ***************************************************

consensus_6302#0      CCATGTTCTTCGTGTGCTTCGTGACCATCACCTTCTTCGGTTCAAGCGTCGGATTCAGGC 350
consensus_6302#1      CCATGTTCTTCGTGTGCTTCGTGACCATCACCTTCTTCGGTTCAAGCGTCGGATTCAGGC 245
                      ************************************************************

consensus_6302#0      TGGCGCTCGGCGTTTTGATTATTTCCGATATTTTGGCTTCGCTCTTGCACTTCACCAGCG 410
consensus_6302#1      TGGCGCTCGGCGTTTTGATTATTTCCGATATTTTGGCTTCGCTCTTGCACTTCACCAGCG 305
                      ************************************************************

consensus_6302#0      CTCGCTTGATCACGAACGTCACCTGCGAATCGTTACTGTGCCGGTAGTACAGCGGTAGGC 470
consensus_6302#1      CTCGCTTGATCACGAACGTCACCTGCGGATCGTTACTGTGCCGGTAGTACAGCGGTAGGC 365
                      *************************** ********************************

consensus_6302#0      CACACTTTTTGCACTTCAAGCGGTGCTGCTTTTCGATGCCCGCTTCCCGCTGGATGAAGA 530
consensus_6302#1      CACACTTTTTGCACTTCAAGCGGTGCTGCTTTTCGATGCCCGCTTCCCGCTGGATGAAGA 425
                      ************************************************************

consensus_6302#0      CTGTTTCGCTCGGGTCCGCATTTACCTTGTTGGCGTGCCGGGCACTGTCTATGACGCGGG 590
consensus_6302#1      CTGTTTCGCTCGGGTCCGCATTTACCTTGTTGGCGTGCCGGGCACTGTCTATGACGCGGG 485
                      ************************************************************

consensus_6302#0      CCCCATCCAACTGCCGGAGGGGTAGTTTTTCTAGTGTGCAATCCAGAATCAAGCTCATTT 650
consensus_6302#1      CCCCATCCAACTGCCGGAGGGGTAGTTTTTCTAGTGTGCAATCCAGAATCAAGCTCATTT 545
                      ************************************************************

consensus_6302#0      GTCCACACAAGCAGTAGTAGATGTTGAGCGGGCCCGTTTCATTGTACTCTTCTTTGTCCT 710
consensus_6302#1      GTCCACACAAGCAGTAGTAGATGTTGAGCGGGCCCGTTTCATTGTACTCTTCTTTGTCCT 605
                      ************************************************************

consensus_6302#0      TTGAATCGGAACAAACAATACTACGCGACACTACTTTCGGCATTTTGTTTTACTGAAAAT 770
consensus_6302#1      TTGAATCGGAACAAACAATACTACGCGACACTACTTTCGGCATTTTGTTTTACTGAAAAT 665
                      ************************************************************

consensus_6302#0      -ACTGTAAGCAATTGTGTTTCTGCTTATCCACCAATTTGTTTACGGGATTCACGAAGGCC 829
consensus_6302#1      GACTGTAAGCAATTGTGTTCCTCCAT-CGTGCCGATTCTTGGCC---------------- 708
                       ****************** ** * *     ** ***  *   *                

consensus_6302#0      CTTGTTTACGTTTGCTGCATATTCCAGTAGG 860
consensus_6302#1      -------------------------------