cluster # 6303

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Anopheles gambiae
cluster # 6303 cluster # 6303 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6303#0 length = 1097 sequences # 3

consensus_6303#1 length = 451 sequences # 1
consensus_6303#2 length = 415 sequences # 1

consensusID : consensus_6303#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1097
fasta sequence

                              [GATGCTGGCGAACTCTAAAGAGGTGTGAAGTATTGTGTGCTGAGTGTTTCTGTGGTGTGCCCGCGCTGTGCAAACTTTGAGAATTAAAAAAAAAAAGAACAATCTTGCTCTTCCTGTTGCCATTAAACAAGCTACCGTGGCACGTGGCAAAACTAAAGTAAAGAGAAAAAGACAGAGGGAGAGGGAAAGACACGACTAGAAAAAGAAAAAAGCAAAGCAAAAGGTAAACTCTAATCTCCATAATAAATATAGTAAGGCTCTGGCCACAGGCCGCCACACCATGCTGCTGCTTGCCTTTCGCAGCTTCTTCTTCATCGCCGTCATCCTGGGCTACAGTACCGGCATCTGGCGACTGATTAACGACTACTTCCGGCGCGAGTTCCAGTCCTACCTGGAGGTGGAGGCGCAGACGAACCAGTACCTGTTGCGGGACCCGCCAAAAGCGGTGCTGGCGCCGGATGCGCCCGATAAGCAGCTTCCAGTTGGGGGCCGGCAACTGGTGCGGTCGCCGGCGACAACACCACCACCACCACCACTGGACGGCAGCCATCAACAGGTGACAGATTCGATTATGGCACTTTTCGAACCCATCACCCTCGACGCGGACGCGAACGTCGATCGGAAAGTTAGTAGTAACCGGCAGGAAGGTACCGTTGGCGGTGATAAAGGGCCACCGGATGCTGCGACGCAGGACGGGACGCTGCCAGTAACGACGGCCGTTGTCGCCGCAGCAGAAGCCACCGATATCCGGTCCCGGAACGGGAAGCAACCTTTGGCCGAAGAAGACGACGACAGAACAGGGCGGAAAGGGATGATGGAAGAGGAAAAGCAGGAGCAGGGGGAGGAAGAGGCGGAGGAGCAGGATAAATGGATTTCGTACTGGAGCGAGCGGGGACGGCGCGCAGGCGTACCGGTGGACGATAATGCGAACGCTTACTGTACGGTGCCGGGCCGGCCCGACTCCTACGCGGAAACGTTGGCTGGTGCCGTGACCAGGATGCGGGAACGAACAGCAGGCGGCGACGCGCTCGGTTGCGATTAAACCGCAAACGCACGCGAGTGCGTTGGCTAGCCGTAATCAAATTAAACGTGCCTAA]

[+] EMBL BX616627             [GATGCTGGCGAACTCTAAAGAGGTGTGAAGTATTGTGTGCTGAGTGTTTCTGTGGTGTGCCCGCGCTGTGCAAACTTTGAGAATTAAAAAAAAAAAGAACAATCTTGCTCTTCCTGTTGCCATTAAACAAGCTACCGTGGCACGTGGCAAAACTAAAGTAAAGAGAAAAAGACAGAGGGAGAGGGAAAGACACGACTAGAAAAAGAAAAAAGCAAAGCAAAAGGTAAACTCTAATCTCCATAATAAATATAGTAAGGCTCTGGCCACAGGCCGCCACACCATGCTGCTGCTTGCCTTTCGCAGCTTCTTCTTCATCGCCGTCATCCTGGGCTACAGTACCGGCATCTGGCGACTGATTAACGACTACTTCCGGCGCGAGTTCCAGTCCTACCTGGAGGTGGAGGCGCAGACGAACCAGTACCTGTTGCGGGACCCGCCAAAAGCGGTGCTGGCGCCGGATGCGCCCGATAAGCAGCTTCCAGTTGGGGGCCGGCAACTGGTGCGGTCGCCGGCGACAACACCACCACCACCACCACTGGACGGCAGCCATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL BX620959             [                                                                                            AAAAGAACAATCTTGCTCTTCCTGTTGCCATTAAACAAGCTACCGTGGCACGTGGCAAAACTAAAACAAAGAGAAAAAGACAGAGGGAGAGGGAAAGACACGACTAGAAAAAGAAAAAAGCAAAGCAAAAGGTAAACTCTAATCTCTATAATAAATATAGTAAGGCTCTGGCCACAGGCCGCCACACCATGCTGCTGCTTGCCTTTCGCAGCTTCTTCTTCATCGCCGTCATCCTGGGCTACAGTACCGGCATCTGGCGACTGATTAACGACTACTTCCGGCGCGAGTTCCAGTCCTACCTGGAGGTGGAGGCGCAGACGAACCAGTACCTGTTGCGGGACCCGCCAAAAGCGGTGCTGGCGCCGGATGCGCCCGATAAGCAGCTTCCAGTTGGGGGCCGGCAACTGGTGCGGTCGCCGCCGCCAACACCACCACCACCACCACTGGACGGCAGCCATCAACAGGTGACAGATTCGATTATGGCACTTTTCGAACCCATCACCCTCGACGCGGACGCGAACGTCGATCGGAAAGTTAGTAGTAACCGGCAGGAAGGTACCGTTGGCGGTGATAAAGGGCCAC                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL BX614732             [                                                                                                                                                                                                                                                                                                                                                                                          GTTCCAGTCCTACCTGGAGGTGGAGGCGCAGACGAACCAGTACCTGTTGCGGGACCCGCCAAAAGCGGTGCTGGCGCCGGATGCGCCCGATAAGCAGCTTCCAGTTGGGGGCCGGCAACTGGTGCGGTCGCCGGCGACAACACCACCACCACCACCACTGGACGGCAGCCATCAACAGGTGACAGATTCGATTATGTCACTTTTCGAACCCATCACCCTCGACGCGGACGCGAACGTCGATCGGAAAGTTAGTAGTAACCGGCAGGAAGGTACCGTTGGCGGTGATAAAGGGCCACCGGATGCTGCGACGCAGGACGGGACGCTGCCAGTAACGACGGCCGTTGTCGCCGCAGCAGAAGCCACCGATATCCGGTCCCGGAACGGGAAGCAACCTTTGGCCGAAGAAGACGACGACAGAACAGGGCGGAAAGGGATGATGGAAGAGGAAAAGCAGGAGCAGGGGGAGGAAGAGGCGGAGGAGCAGGATAAATGGATTTCGTACTGGAGCGAGCGGGGACGGCGCGCAGGCGTACCGGTGGACGATAATGCGAACGCTTACTGTACGGTGCCGGGCCGGCCCGACTCCTACGCGGAAACGTTGGCTGGTGCCGTGACCAGGATGCGGGAACGAACAGCAGGCGGCGACGCGCTCGGTTGCGATTAAACCGCAAACGCACGCGAGTGCGTTGGCTAGCCGTAATCAAATTAAACGTGCCTAA]




>consensus_6303#0
GATGCTGGCGAACTCTAAAGAGGTGTGAAGTATTGTGTGCTGAGTGTTTCTGTGGTGTGC
CCGCGCTGTGCAAACTTTGAGAATTAAAAAAAAAAAGAACAATCTTGCTCTTCCTGTTGC
CATTAAACAAGCTACCGTGGCACGTGGCAAAACTAAAGTAAAGAGAAAAAGACAGAGGGA
GAGGGAAAGACACGACTAGAAAAAGAAAAAAGCAAAGCAAAAGGTAAACTCTAATCTCCA
TAATAAATATAGTAAGGCTCTGGCCACAGGCCGCCACACCATGCTGCTGCTTGCCTTTCG
CAGCTTCTTCTTCATCGCCGTCATCCTGGGCTACAGTACCGGCATCTGGCGACTGATTAA
CGACTACTTCCGGCGCGAGTTCCAGTCCTACCTGGAGGTGGAGGCGCAGACGAACCAGTA
CCTGTTGCGGGACCCGCCAAAAGCGGTGCTGGCGCCGGATGCGCCCGATAAGCAGCTTCC
AGTTGGGGGCCGGCAACTGGTGCGGTCGCCGGCGACAACACCACCACCACCACCACTGGA
CGGCAGCCATCAACAGGTGACAGATTCGATTATGGCACTTTTCGAACCCATCACCCTCGA
CGCGGACGCGAACGTCGATCGGAAAGTTAGTAGTAACCGGCAGGAAGGTACCGTTGGCGG
TGATAAAGGGCCACCGGATGCTGCGACGCAGGACGGGACGCTGCCAGTAACGACGGCCGT
TGTCGCCGCAGCAGAAGCCACCGATATCCGGTCCCGGAACGGGAAGCAACCTTTGGCCGA
AGAAGACGACGACAGAACAGGGCGGAAAGGGATGATGGAAGAGGAAAAGCAGGAGCAGGG
GGAGGAAGAGGCGGAGGAGCAGGATAAATGGATTTCGTACTGGAGCGAGCGGGGACGGCG
CGCAGGCGTACCGGTGGACGATAATGCGAACGCTTACTGTACGGTGCCGGGCCGGCCCGA
CTCCTACGCGGAAACGTTGGCTGGTGCCGTGACCAGGATGCGGGAACGAACAGCAGGCGG
CGACGCGCTCGGTTGCGATTAAACCGCAAACGCACGCGAGTGCGTTGGCTAGCCGTAATC
AAATTAAACGTGCCTAA

consensusID : consensus_6303#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 451
fasta sequence

                              [TTTCTGTGGTGTGCCCGCGCTGTGCAAACTTTGAGAATTAAAAAAAAAAGAACAATCTTGCTCTTCCTGTTGCCATTAAACAAGCTACCGTGGCACGTGGCAAAACTAAAATAAAGAGAAAAAGACAGAGGGAGAGGGAAAGACACGACTAGAAAAAGAAAAAAGCAAAGCAAAAGCTTCTTCTTCATCGCCGTCATCCTGGGCTACAGTACCGGCATCTGGCGACTGATTAACGACTACTTCCGGCGCGAGTTCCAGTCCTACCTGGAGGTGGAGGCGCAGACGAACCAGTACCTGTTGCGGGACCCCGCCAAAAGCGGTGCTGGCGCCGGATGCGCCCGATAAGCAGCTTCCAGTTGGGGGGCCGGCAACTGGTGCGGTCGCCGCCGCCAACACCACCACCACCACCACTGGACGGCAGCCATCAACAGCTGACAGATTCGATNATGGC]

[+] EMBL BX619140             [TTTCTGTGGTGTGCCCGCGCTGTGCAAACTTTGAGAATTAAAAAAAAAAGAACAATCTTGCTCTTCCTGTTGCCATTAAACAAGCTACCGTGGCACGTGGCAAAACTAAAATAAAGAGAAAAAGACAGAGGGAGAGGGAAAGACACGACTAGAAAAAGAAAAAAGCAAAGCAAAAGCTTCTTCTTCATCGCCGTCATCCTGGGCTACAGTACCGGCATCTGGCGACTGATTAACGACTACTTCCGGCGCGAGTTCCAGTCCTACCTGGAGGTGGAGGCGCAGACGAACCAGTACCTGTTGCGGGACCCCGCCAAAAGCGGTGCTGGCGCCGGATGCGCCCGATAAGCAGCTTCCAGTTGGGGGGCCGGCAACTGGTGCGGTCGCCGCCGCCAACACCACCACCACCACCACTGGACGGCAGCCATCAACAGCTGACAGATTCGATNATGGC]




>consensus_6303#1
TTTCTGTGGTGTGCCCGCGCTGTGCAAACTTTGAGAATTAAAAAAAAAAGAACAATCTTG
CTCTTCCTGTTGCCATTAAACAAGCTACCGTGGCACGTGGCAAAACTAAAATAAAGAGAA
AAAGACAGAGGGAGAGGGAAAGACACGACTAGAAAAAGAAAAAAGCAAAGCAAAAGCTTC
TTCTTCATCGCCGTCATCCTGGGCTACAGTACCGGCATCTGGCGACTGATTAACGACTAC
TTCCGGCGCGAGTTCCAGTCCTACCTGGAGGTGGAGGCGCAGACGAACCAGTACCTGTTG
CGGGACCCCGCCAAAAGCGGTGCTGGCGCCGGATGCGCCCGATAAGCAGCTTCCAGTTGG
GGGGCCGGCAACTGGTGCGGTCGCCGCCGCCAACACCACCACCACCACCACTGGACGGCA
GCCATCAACAGCTGACAGATTCGATNATGGC

consensusID : consensus_6303#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 415
fasta sequence

                              [CAGAATCGGCCCGAGGATGNAAAAAGAACAATCTTGCTCTTCCTCGTTGCCATTAAACAAGCTACCGTGGCACGTGGCAAAACTAAAGTAAAGAGAAAAAGACAGAGGGAGAGGGAAAGACACGACTAGAAAAAGAAAAAAGCAAAGCAAAAGGTAAACTCTAATCTCCATAATAAATATAGTAAGGCTCTGGCCACAGGCCGCCACACCATGCTGCTGCTTGCCTTTCGCAGCTTCTTCTTCATCGCCGTCATCCTGGGCTACAGTACCGGCATCTGGCGACTGATTAACGACTACTTCCGGCGCGGAGTTCCAGTCCTACCTGGAGGTGGAGGCGCAGACGGAACCAGGTACCTGTTGCGGGACCCGNCAAAAGCGGTGCTGGCGCCGGATGCGCCCGATAAGCAGCTTCCAG]

[+] EMBL BX468598             [CAGAATCGGCCCGAGGATGNAAAAAGAACAATCTTGCTCTTCCTCGTTGCCATTAAACAAGCTACCGTGGCACGTGGCAAAACTAAAGTAAAGAGAAAAAGACAGAGGGAGAGGGAAAGACACGACTAGAAAAAGAAAAAAGCAAAGCAAAAGGTAAACTCTAATCTCCATAATAAATATAGTAAGGCTCTGGCCACAGGCCGCCACACCATGCTGCTGCTTGCCTTTCGCAGCTTCTTCTTCATCGCCGTCATCCTGGGCTACAGTACCGGCATCTGGCGACTGATTAACGACTACTTCCGGCGCGGAGTTCCAGTCCTACCTGGAGGTGGAGGCGCAGACGGAACCAGGTACCTGTTGCGGGACCCGNCAAAAGCGGTGCTGGCGCCGGATGCGCCCGATAAGCAGCTTCCAG]




>consensus_6303#2
CAGAATCGGCCCGAGGATGNAAAAAGAACAATCTTGCTCTTCCTCGTTGCCATTAAACAA
GCTACCGTGGCACGTGGCAAAACTAAAGTAAAGAGAAAAAGACAGAGGGAGAGGGAAAGA
CACGACTAGAAAAAGAAAAAAGCAAAGCAAAAGGTAAACTCTAATCTCCATAATAAATAT
AGTAAGGCTCTGGCCACAGGCCGCCACACCATGCTGCTGCTTGCCTTTCGCAGCTTCTTC
TTCATCGCCGTCATCCTGGGCTACAGTACCGGCATCTGGCGACTGATTAACGACTACTTC
CGGCGCGGAGTTCCAGTCCTACCTGGAGGTGGAGGCGCAGACGGAACCAGGTACCTGTTG
CGGGACCCGNCAAAAGCGGTGCTGGCGCCGGATGCGCCCGATAAGCAGCTTCCAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6303#0      GATGCTGGCGAACTCTAAAGAGGTGTGAAGTATTGTGTGCTGAGTGTTTCTGTGGTGTGC 60
consensus_6303#1      ----------------------------------------------TTTCTGTGGTGTGC 14
consensus_6303#2      ------------------------------------------------------------
                                                                                  

consensus_6303#0      CCGCGCTGTGCAAACTTTGAGAATTAAAAAAAAAAAGAACAATCTTGCTCTTCCT-GTTG 119
consensus_6303#1      CCGCGCTGTGCAAACTTTGAGAATTAAAAAAAAAA-GAACAATCTTGCTCTTCCT-GTTG 72
consensus_6303#2      ----------CAGAATCGGCCCGAGGATGNAAAAA-GAACAATCTTGCTCTTCCTCGTTG 49
                                ** * *  *       *   ***** ******************* ****

consensus_6303#0      CCATTAAACAAGCTACCGTGGCACGTGGCAAAACTAAAGTAAAGAGAAAAAGACAGAGGG 179
consensus_6303#1      CCATTAAACAAGCTACCGTGGCACGTGGCAAAACTAAAATAAAGAGAAAAAGACAGAGGG 132
consensus_6303#2      CCATTAAACAAGCTACCGTGGCACGTGGCAAAACTAAAGTAAAGAGAAAAAGACAGAGGG 109
                      ************************************** *********************

consensus_6303#0      AGAGGGAAAGACACGACTAGAAAAAGAAAAAAGCAAAGCAAAAGGTAAACTCTAATCTCC 239
consensus_6303#1      AGAGGGAAAGACACGACTAGAAAAAGAAAAAAGCAAAGCAAAAG---------------- 176
consensus_6303#2      AGAGGGAAAGACACGACTAGAAAAAGAAAAAAGCAAAGCAAAAGGTAAACTCTAATCTCC 169
                      ********************************************                

consensus_6303#0      ATAATAAATATAGTAAGGCTCTGGCCACAGGCCGCCACACCATGCTGCTGCTTGCCTTTC 299
consensus_6303#1      ------------------------------------------------------------
consensus_6303#2      ATAATAAATATAGTAAGGCTCTGGCCACAGGCCGCCACACCATGCTGCTGCTTGCCTTTC 229
                                                                                  

consensus_6303#0      GCAGCTTCTTCTTCATCGCCGTCATCCTGGGCTACAGTACCGGCATCTGGCGACTGATTA 359
consensus_6303#1      ----CTTCTTCTTCATCGCCGTCATCCTGGGCTACAGTACCGGCATCTGGCGACTGATTA 232
consensus_6303#2      GCAGCTTCTTCTTCATCGCCGTCATCCTGGGCTACAGTACCGGCATCTGGCGACTGATTA 289
                          ********************************************************

consensus_6303#0      ACGACTACTTCCGGCGCG-AGTTCCAGTCCTACCTGGAGGTGGAGGCGCAGACG-AACCA 417
consensus_6303#1      ACGACTACTTCCGGCGCG-AGTTCCAGTCCTACCTGGAGGTGGAGGCGCAGACG-AACCA 290
consensus_6303#2      ACGACTACTTCCGGCGCGGAGTTCCAGTCCTACCTGGAGGTGGAGGCGCAGACGGAACCA 349
                      ****************** *********************************** *****

consensus_6303#0      G-TACCTGTTGCGGGACCC-GCCAAAAGCGGTGCTGGCGCCGGATGCGCCCGATAAGCAG 475
consensus_6303#1      G-TACCTGTTGCGGGACCCCGCCAAAAGCGGTGCTGGCGCCGGATGCGCCCGATAAGCAG 349
consensus_6303#2      GGTACCTGTTGCGGGACCC-GNCAAAAGCGGTGCTGGCGCCGGATGCGCCCGATAAGCAG 408
                      * ***************** * **************************************

consensus_6303#0      CTTCCAGTTGGGGG-CCGGCAACTGGTGCGGTCGCCGGCGACAACACCACCACCACCACC 534
consensus_6303#1      CTTCCAGTTGGGGGGCCGGCAACTGGTGCGGTCGCCGCCGCCAACACCACCACCACCACC 409
consensus_6303#2      CTTCCAG----------------------------------------------------- 415
                      *******                                                     

consensus_6303#0      ACTGGACGGCAGCCATCAACAGGTGACAGATTCGATTATGGCACTTTTCGAACCCATCAC 594
consensus_6303#1      ACTGGACGGCAGCCATCAACAGCTGACAGATTCGATNATGGC------------------ 451
consensus_6303#2      ------------------------------------------------------------
                                                                                  

consensus_6303#0      CCTCGACGCGGACGCGAACGTCGATCGGAAAGTTAGTAGTAACCGGCAGGAAGGTACCGT 654
consensus_6303#1      ------------------------------------------------------------
consensus_6303#2      ------------------------------------------------------------
                                                                                  

consensus_6303#0      TGGCGGTGATAAAGGGCCACCGGATGCTGCGACGCAGGACGGGACGCTGCCAGTAACGAC 714
consensus_6303#1      ------------------------------------------------------------
consensus_6303#2      ------------------------------------------------------------
                                                                                  

consensus_6303#0      GGCCGTTGTCGCCGCAGCAGAAGCCACCGATATCCGGTCCCGGAACGGGAAGCAACCTTT 774
consensus_6303#1      ------------------------------------------------------------
consensus_6303#2      ------------------------------------------------------------
                                                                                  

consensus_6303#0      GGCCGAAGAAGACGACGACAGAACAGGGCGGAAAGGGATGATGGAAGAGGAAAAGCAGGA 834
consensus_6303#1      ------------------------------------------------------------
consensus_6303#2      ------------------------------------------------------------
                                                                                  

consensus_6303#0      GCAGGGGGAGGAAGAGGCGGAGGAGCAGGATAAATGGATTTCGTACTGGAGCGAGCGGGG 894
consensus_6303#1      ------------------------------------------------------------
consensus_6303#2      ------------------------------------------------------------
                                                                                  

consensus_6303#0      ACGGCGCGCAGGCGTACCGGTGGACGATAATGCGAACGCTTACTGTACGGTGCCGGGCCG 954
consensus_6303#1      ------------------------------------------------------------
consensus_6303#2      ------------------------------------------------------------
                                                                                  

consensus_6303#0      GCCCGACTCCTACGCGGAAACGTTGGCTGGTGCCGTGACCAGGATGCGGGAACGAACAGC 1014
consensus_6303#1      ------------------------------------------------------------
consensus_6303#2      ------------------------------------------------------------
                                                                                  

consensus_6303#0      AGGCGGCGACGCGCTCGGTTGCGATTAAACCGCAAACGCACGCGAGTGCGTTGGCTAGCC 1074
consensus_6303#1      ------------------------------------------------------------
consensus_6303#2      ------------------------------------------------------------
                                                                                  

consensus_6303#0      GTAATCAAATTAAACGTGCCTAA 1097
consensus_6303#1      -----------------------
consensus_6303#2      -----------------------